Wall clock time and date at job start Tue Mar 31 2020 22:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47087 * 2 1 4 4 C 1.52996 * 109.47355 * 239.99673 * 2 1 3 5 5 S 1.81398 * 109.47205 * 305.00385 * 4 2 1 6 6 C 1.81399 * 101.92475 * 179.97438 * 5 4 2 7 7 O 1.42105 * 108.57967 * 294.48551 * 5 4 2 8 8 O 1.42101 * 108.58434 * 65.51171 * 5 4 2 9 9 N 1.46507 * 109.46751 * 119.99780 * 2 1 3 10 10 C 1.34773 * 120.00266 * 300.00411 * 9 2 1 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 2 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 2 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.08995 * 109.47176 * 299.99917 * 1 2 3 28 28 H 1.08999 * 109.46822 * 60.00547 * 1 2 3 29 29 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46889 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47131 * 299.99894 * 3 2 1 32 32 H 1.09004 * 109.47115 * 59.99950 * 3 2 1 33 33 H 1.08997 * 109.46989 * 65.00042 * 4 2 1 34 34 H 1.09001 * 109.47157 * 185.00260 * 4 2 1 35 35 H 1.09005 * 109.47251 * 59.99735 * 6 5 4 36 36 H 1.08996 * 109.47558 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47231 * 299.99957 * 6 5 4 38 38 H 0.97000 * 119.99705 * 120.00106 * 9 2 1 39 39 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 40 40 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 41 41 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 43 43 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 45 45 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 16 1.3167 -2.3831 -1.3256 6 6 2.0445 -3.0388 -2.8523 7 8 1.8067 -3.1411 -0.2280 8 8 -0.0866 -2.2581 -1.5109 9 7 2.0183 -0.6906 1.1963 10 6 1.6926 -0.2302 2.4203 11 8 0.9957 0.7562 2.5315 12 6 2.1953 -0.9402 3.6508 13 6 1.6933 -0.2296 4.8813 14 6 2.4778 0.7164 5.5011 15 6 2.0212 1.3668 6.6368 16 6 0.7688 1.0783 7.1575 17 6 -0.0349 0.1408 6.5507 18 6 0.4183 -0.5258 5.3970 19 6 -0.3993 -1.4906 4.7646 20 1 -0.2733 -1.6989 3.7123 21 6 -1.3717 -2.1755 5.5019 22 7 -1.2289 -2.3238 6.7939 23 14 -2.8736 -2.8779 4.6415 24 1 -3.7448 -3.5519 5.6376 25 1 -3.6278 -1.7792 3.9865 26 1 -2.4418 -3.8617 3.6163 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.7517 -0.1584 -2.1369 34 1 3.1264 -0.7995 -1.2054 35 1 3.1307 -3.0488 -2.7620 36 1 1.6848 -4.0540 -3.0195 37 1 1.7557 -2.4076 -3.6928 38 1 2.5759 -1.4793 1.1073 39 1 3.2853 -0.9398 3.6506 40 1 1.8325 -1.9680 3.6510 41 1 3.4547 0.9494 5.1038 42 1 2.6454 2.1041 7.1196 43 1 0.4230 1.5914 8.0426 44 1 -1.0101 -0.0821 6.9576 45 1 -0.4111 -2.0345 7.2278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759264535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:56 Heat of formation + Delta-G solvation = -91.040035 kcal Electronic energy + Delta-G solvation = -28569.457496 eV Core-core repulsion = 24679.060038 eV Total energy + Delta-G solvation = -3890.397458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.83996 -37.79269 -37.23286 -36.42576 -35.98503 -33.75380 -32.25302 -31.14648 -30.12050 -29.12119 -28.06742 -27.19438 -26.67116 -24.80345 -21.65386 -20.84310 -19.81043 -19.31817 -19.12151 -17.67795 -17.00649 -16.94582 -16.41250 -16.01012 -15.44360 -14.93990 -14.81451 -14.13078 -14.04885 -13.86344 -13.63240 -13.54511 -13.52966 -13.40202 -13.22379 -12.85147 -12.32597 -12.27280 -12.21213 -12.06012 -11.91865 -11.86741 -11.62869 -11.56163 -11.32886 -11.18881 -11.10545 -10.92308 -10.74066 -10.42187 -10.36456 -10.28758 -9.56355 -9.27909 -8.99368 -8.85623 -8.78142 -7.46869 -7.41359 -7.02795 -4.31893 -0.34537 2.43723 2.82488 2.94323 3.26392 3.30148 3.37077 3.39016 3.42897 3.47160 3.77159 4.12535 4.14910 4.35622 4.40228 4.66902 4.68634 4.93348 5.06128 5.21639 5.26168 5.43847 5.67572 5.74606 5.84128 5.89176 6.01541 6.03788 6.15448 6.25047 6.34472 6.43840 6.46315 6.59285 6.77130 6.82104 7.08930 7.30044 7.52020 7.76366 7.92799 7.93985 7.98226 8.04543 8.30891 8.44277 8.86837 8.89641 9.02372 10.16960 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.004355 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.622308 B = 6427.123100 C = 7931.579687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.194 3.806 3 C -0.155 4.155 4 C -0.619 4.619 5 S 2.415 3.585 6 C -0.662 4.662 7 O -0.927 6.927 8 O -0.926 6.926 9 N -0.750 5.750 10 C 0.523 3.477 11 O -0.514 6.514 12 C -0.072 4.072 13 C -0.183 4.183 14 C -0.068 4.068 15 C -0.255 4.255 16 C -0.086 4.086 17 C -0.216 4.216 18 C 0.117 3.883 19 C -0.515 4.515 20 H 0.074 0.926 21 C 0.042 3.958 22 N -0.799 5.799 23 Si 1.055 2.945 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.403 0.597 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -0.797 -19.517 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.107 3.893 3 C -0.214 4.214 4 C -0.747 4.747 5 S 2.596 3.404 6 C -0.811 4.811 7 O -0.924 6.924 8 O -0.923 6.923 9 N -0.408 5.408 10 C 0.311 3.689 11 O -0.387 6.387 12 C -0.112 4.112 13 C -0.185 4.185 14 C -0.087 4.087 15 C -0.274 4.274 16 C -0.105 4.105 17 C -0.235 4.235 18 C 0.114 3.886 19 C -0.543 4.543 20 H 0.092 0.908 21 C -0.180 4.180 22 N -0.423 5.423 23 Si 0.879 3.121 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.200 1.200 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.239 0.761 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.122 0.878 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.015 -1.313 -18.528 19.524 hybrid contribution 2.447 0.879 -1.106 2.826 sum 8.462 -0.433 -19.634 21.384 Atomic orbital electron populations 1.22788 0.92854 1.05085 1.05021 1.19776 0.94946 0.93243 0.81374 1.22183 1.00743 0.94423 1.04014 1.30667 1.13527 1.23313 1.07224 1.08182 0.76864 0.77918 0.77418 1.30343 1.14146 1.13797 1.22806 1.93610 1.82014 1.68110 1.48691 1.93626 1.26966 1.85697 1.86002 1.46587 1.56062 1.32868 1.05279 1.21137 0.79477 0.84485 0.83800 1.90609 1.35929 1.25830 1.86345 1.20277 0.99613 1.00790 0.90523 1.18998 0.95797 1.04396 0.99296 1.20335 0.97266 0.95621 0.95462 1.20233 0.98444 1.07269 1.01491 1.20587 0.94624 0.97326 0.97963 1.21130 0.99810 1.01476 1.01134 1.17384 0.89778 0.90787 0.90658 1.20481 1.16035 1.19328 0.98433 0.90800 1.26902 1.01772 0.94256 0.95064 1.70454 1.29075 1.31890 1.10834 0.83781 0.75079 0.77263 0.75955 1.19901 1.19939 1.19978 0.88464 0.91243 0.90433 0.92659 0.92033 0.89251 0.83628 0.84444 0.85380 0.85168 0.85404 0.76082 0.90613 0.88328 0.89724 0.89596 0.89508 0.87809 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.05 7.64 37.16 0.28 -2.77 16 2 C 0.19 2.50 0.75 -131.82 -0.10 2.40 16 3 C -0.15 -1.91 8.40 37.16 0.31 -1.60 16 4 C -0.62 -4.60 4.88 37.16 0.18 -4.41 16 5 S 2.42 22.23 4.82 -107.50 -0.52 21.71 16 6 C -0.66 -2.94 10.62 101.05 1.07 -1.86 16 7 O -0.93 -11.93 16.18 -57.83 -0.94 -12.87 16 8 O -0.93 -12.15 15.23 -57.83 -0.88 -13.03 16 9 N -0.75 -11.44 4.72 -47.61 -0.22 -11.66 16 10 C 0.52 10.34 6.88 -10.99 -0.08 10.26 16 11 O -0.51 -11.84 12.24 5.56 0.07 -11.77 16 12 C -0.07 -1.48 5.18 -29.03 -0.15 -1.63 16 13 C -0.18 -4.48 4.43 -103.91 -0.46 -4.94 16 14 C -0.07 -1.59 9.66 -39.66 -0.38 -1.98 16 15 C -0.26 -5.97 10.05 -39.29 -0.39 -6.37 16 16 C -0.09 -2.12 10.02 -39.66 -0.40 -2.52 16 17 C -0.22 -5.81 7.95 -38.87 -0.31 -6.12 16 18 C 0.12 3.17 5.30 -106.82 -0.57 2.60 16 19 C -0.51 -14.02 8.08 -37.74 -0.30 -14.33 16 20 H 0.07 2.00 6.73 -52.49 -0.35 1.65 16 21 C 0.04 1.10 4.94 -17.34 -0.09 1.02 16 22 N -0.80 -21.77 12.31 55.55 0.68 -21.09 16 23 Si 1.06 23.14 30.00 -169.99 -5.10 18.04 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H 0.10 1.82 6.17 -51.93 -0.32 1.50 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.27 5.23 -51.93 -0.27 1.00 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.43 6.17 -51.93 -0.32 1.11 16 33 H 0.15 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.14 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 38 H 0.40 5.30 6.78 -40.82 -0.28 5.02 16 39 H 0.08 1.29 8.05 -51.93 -0.42 0.88 16 40 H 0.10 2.07 7.06 -51.93 -0.37 1.70 16 41 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.10 2.87 6.49 -52.49 -0.34 2.53 16 45 H 0.30 8.31 6.68 -40.82 -0.27 8.04 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -35.98 370.27 -9.09 -45.07 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.39 Total: 12.26 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: -1.38 Total: -32.24 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.46 Total: -32.75 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.75 Total: -37.67 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.10 Total: 18.04 kcal Atomic # 16 Polarization: 22.23 SS G_CDS: -0.52 Total: 21.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.98 -9.09 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759264535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.968 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds