Wall clock time and date at job start Tue Mar 31 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47087 * 2 1 4 4 C 1.52996 * 109.47355 * 239.99673 * 2 1 3 5 5 S 1.81398 * 109.47205 * 305.00385 * 4 2 1 6 6 C 1.81399 * 101.92475 * 179.97438 * 5 4 2 7 7 O 1.42105 * 108.57967 * 294.48551 * 5 4 2 8 8 O 1.42101 * 108.58434 * 65.51171 * 5 4 2 9 9 N 1.46507 * 109.46751 * 119.99780 * 2 1 3 10 10 C 1.34773 * 120.00266 * 300.00411 * 9 2 1 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 2 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 2 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.08995 * 109.47176 * 299.99917 * 1 2 3 28 28 H 1.08999 * 109.46822 * 60.00547 * 1 2 3 29 29 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46889 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47131 * 299.99894 * 3 2 1 32 32 H 1.09004 * 109.47115 * 59.99950 * 3 2 1 33 33 H 1.08997 * 109.46989 * 65.00042 * 4 2 1 34 34 H 1.09001 * 109.47157 * 185.00260 * 4 2 1 35 35 H 1.09005 * 109.47251 * 59.99735 * 6 5 4 36 36 H 1.08996 * 109.47558 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47231 * 299.99957 * 6 5 4 38 38 H 0.97000 * 119.99705 * 120.00106 * 9 2 1 39 39 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 40 40 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 41 41 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 43 43 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 45 45 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 16 1.3167 -2.3831 -1.3256 6 6 2.0445 -3.0388 -2.8523 7 8 1.8067 -3.1411 -0.2280 8 8 -0.0866 -2.2581 -1.5109 9 7 2.0183 -0.6906 1.1963 10 6 1.6926 -0.2302 2.4203 11 8 0.9957 0.7562 2.5315 12 6 2.1953 -0.9402 3.6508 13 6 1.6933 -0.2296 4.8813 14 6 2.4778 0.7164 5.5011 15 6 2.0212 1.3668 6.6368 16 6 0.7688 1.0783 7.1575 17 6 -0.0349 0.1408 6.5507 18 6 0.4183 -0.5258 5.3970 19 6 -0.3993 -1.4906 4.7646 20 1 -0.2733 -1.6989 3.7123 21 6 -1.3717 -2.1755 5.5019 22 7 -1.2289 -2.3238 6.7939 23 14 -2.8736 -2.8779 4.6415 24 1 -3.7448 -3.5519 5.6376 25 1 -3.6278 -1.7792 3.9865 26 1 -2.4418 -3.8617 3.6163 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.7517 -0.1584 -2.1369 34 1 3.1264 -0.7995 -1.2054 35 1 3.1307 -3.0488 -2.7620 36 1 1.6848 -4.0540 -3.0195 37 1 1.7557 -2.4076 -3.6928 38 1 2.5759 -1.4793 1.1073 39 1 3.2853 -0.9398 3.6506 40 1 1.8325 -1.9680 3.6510 41 1 3.4547 0.9494 5.1038 42 1 2.6454 2.1041 7.1196 43 1 0.4230 1.5914 8.0426 44 1 -1.0101 -0.0821 6.9576 45 1 -0.4111 -2.0345 7.2278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759264535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:55 Heat of formation + Delta-G solvation = -117.565740 kcal Electronic energy + Delta-G solvation = -28570.607737 eV Core-core repulsion = 24679.060038 eV Total energy + Delta-G solvation = -3891.547699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25116 -39.58870 -38.02796 -37.64731 -36.89773 -35.74120 -33.84494 -32.65023 -31.09762 -30.56735 -28.81104 -28.42854 -28.26816 -26.78505 -23.10326 -22.81074 -21.43832 -20.67021 -19.87226 -19.60822 -18.18700 -17.81929 -17.25514 -16.92170 -16.82400 -16.61129 -16.35810 -15.91048 -15.69025 -15.26672 -14.86945 -14.69776 -14.48334 -14.18110 -14.04702 -13.88502 -13.86686 -13.72020 -13.48608 -13.20656 -13.14702 -13.08891 -12.99839 -12.93502 -12.68454 -12.58494 -12.48866 -12.25364 -12.11190 -12.01332 -11.94462 -11.47733 -11.24413 -11.21961 -10.85061 -10.53635 -10.08754 -9.43468 -9.42480 -9.05905 -6.39669 -0.96184 0.91781 0.99009 1.42823 1.58399 1.71714 1.79584 1.85767 2.24018 2.27774 2.69489 2.70517 3.11862 3.39305 3.59108 3.77174 3.99696 4.08672 4.11608 4.17124 4.30202 4.32889 4.36312 4.49620 4.57446 4.60483 4.72198 4.72869 4.76873 4.82428 4.91854 4.98331 4.99952 5.08898 5.30102 5.33021 5.36696 5.50205 5.59121 5.80429 5.85207 5.99587 6.05985 6.30512 6.46390 6.62937 6.87259 7.01292 7.41772 8.07562 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.004355 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.622308 B = 6427.123100 C = 7931.579687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.182 3.818 3 C -0.151 4.151 4 C -0.603 4.603 5 S 2.391 3.609 6 C -0.631 4.631 7 O -0.981 6.981 8 O -0.981 6.981 9 N -0.735 5.735 10 C 0.522 3.478 11 O -0.554 6.554 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.078 4.078 15 C -0.248 4.248 16 C -0.097 4.097 17 C -0.244 4.244 18 C 0.087 3.913 19 C -0.542 4.542 20 H 0.061 0.939 21 C 0.007 3.993 22 N -0.818 5.818 23 Si 1.097 2.903 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.261 1.261 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.190 0.810 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.133 0.867 37 H 0.160 0.840 38 H 0.414 0.586 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.463 -0.279 -22.980 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.096 3.904 3 C -0.210 4.210 4 C -0.733 4.733 5 S 2.579 3.421 6 C -0.785 4.785 7 O -0.978 6.978 8 O -0.978 6.978 9 N -0.392 5.392 10 C 0.309 3.691 11 O -0.431 6.431 12 C -0.116 4.116 13 C -0.188 4.188 14 C -0.096 4.096 15 C -0.266 4.266 16 C -0.115 4.115 17 C -0.263 4.263 18 C 0.084 3.916 19 C -0.571 4.571 20 H 0.080 0.920 21 C -0.209 4.209 22 N -0.441 5.441 23 Si 0.916 3.084 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.185 1.185 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.208 0.792 34 H 0.198 0.802 35 H 0.179 0.821 36 H 0.152 0.848 37 H 0.178 0.822 38 H 0.252 0.748 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.942 -0.817 -21.970 23.734 hybrid contribution 1.719 0.835 -0.121 1.915 sum 10.660 0.018 -22.091 24.528 Atomic orbital electron populations 1.22789 0.95408 1.03745 1.04116 1.19997 0.93274 0.94559 0.82553 1.22134 1.01949 0.93488 1.03387 1.30568 1.15798 1.21216 1.05683 1.08346 0.76247 0.78632 0.78850 1.30067 1.15546 1.13998 1.18843 1.93548 1.82305 1.69515 1.52395 1.93562 1.30643 1.86505 1.87064 1.46445 1.55052 1.32825 1.04913 1.20903 0.79171 0.83967 0.85018 1.90607 1.37683 1.27698 1.87116 1.20319 1.01835 0.99557 0.89850 1.19470 0.94909 1.04206 1.00203 1.20782 0.98648 0.94896 0.95298 1.20715 0.97982 1.06898 1.01052 1.20895 0.95065 0.96827 0.98707 1.21131 0.99762 1.03208 1.02220 1.17742 0.91214 0.91302 0.91306 1.20517 1.17919 1.20729 0.97927 0.92037 1.28064 1.03772 0.93966 0.95108 1.70547 1.28574 1.33641 1.11387 0.83261 0.72498 0.77074 0.75583 1.18593 1.19873 1.18541 0.92930 0.88511 0.92069 0.90553 0.89054 0.93560 0.79217 0.80214 0.82141 0.84804 0.82215 0.74786 0.86819 0.89643 0.86141 0.86153 0.87198 0.89933 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.33 7.64 71.98 0.55 -5.78 16 2 C 0.18 4.39 0.75 3.60 0.00 4.39 16 3 C -0.15 -3.37 8.40 71.98 0.60 -2.77 16 4 C -0.60 -6.35 4.88 71.98 0.35 -6.00 16 5 S 2.39 39.34 4.82 -56.49 -0.27 39.07 16 6 C -0.63 -2.43 10.62 113.37 1.20 -1.23 16 7 O -0.98 -24.92 16.18 -127.37 -2.06 -26.98 16 8 O -0.98 -25.68 15.23 -127.37 -1.94 -27.62 16 9 N -0.73 -22.01 4.72 -422.93 -2.00 -24.01 16 10 C 0.52 21.04 6.88 87.66 0.60 21.65 16 11 O -0.55 -26.67 12.24 -3.04 -0.04 -26.71 16 12 C -0.08 -3.15 5.18 29.10 0.15 -3.00 16 13 C -0.19 -9.26 4.43 -19.40 -0.09 -9.34 16 14 C -0.08 -3.54 9.66 22.22 0.21 -3.32 16 15 C -0.25 -11.21 10.05 22.46 0.23 -10.98 16 16 C -0.10 -4.77 10.02 22.22 0.22 -4.55 16 17 C -0.24 -13.72 7.95 22.73 0.18 -13.54 16 18 C 0.09 4.94 5.30 -21.29 -0.11 4.83 16 19 C -0.54 -31.41 8.08 23.46 0.19 -31.22 16 20 H 0.06 3.59 6.73 -2.91 -0.02 3.57 16 21 C 0.01 0.41 4.94 85.25 0.42 0.83 16 22 N -0.82 -46.99 12.31 21.82 0.27 -46.72 16 23 Si 1.10 48.87 30.00 68.60 2.06 50.93 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 27 H 0.05 2.11 6.17 -2.39 -0.01 2.09 16 28 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 2.11 5.23 -2.39 -0.01 2.10 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.47 6.17 -2.38 -0.01 1.45 16 33 H 0.19 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.18 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.16 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.41 10.46 6.78 -92.71 -0.63 9.83 16 39 H 0.11 3.71 8.05 -2.39 -0.02 3.69 16 40 H 0.09 3.75 7.06 -2.39 -0.02 3.73 16 41 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 42 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 43 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.08 4.88 6.49 -2.91 -0.02 4.87 16 45 H 0.28 16.87 6.68 -92.71 -0.62 16.25 16 Total: -1.00 -87.93 370.27 1.27 -86.66 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.53 Total: 35.42 kcal Atomic # 6 Polarization: -64.76 SS G_CDS: 4.72 Total: -60.03 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.73 Total: -70.73 kcal Atomic # 8 Polarization: -77.27 SS G_CDS: -4.04 Total: -81.31 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.06 Total: 50.93 kcal Atomic # 16 Polarization: 39.34 SS G_CDS: -0.27 Total: 39.07 kcal Total: -87.93 1.27 -86.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759264535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.907 kcal (2) G-P(sol) polarization free energy of solvation -87.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds