Wall clock time and date at job start Wed Apr 1 2020 00:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47505 * 2 1 4 4 C 1.53000 * 109.46831 * 239.99976 * 2 1 3 5 5 C 1.53002 * 109.47209 * 174.99894 * 4 2 1 6 6 S 1.81398 * 109.47321 * 179.97438 * 5 4 2 7 7 C 1.81402 * 103.00058 * 179.97438 * 6 5 4 8 8 O 1.42104 * 109.46675 * 63.61576 * 6 5 4 9 9 N 1.46503 * 109.47216 * 120.00308 * 2 1 3 10 10 C 1.34772 * 119.99844 * 274.99626 * 9 2 1 11 11 O 1.21283 * 120.00079 * 0.02562 * 10 9 2 12 12 C 1.50703 * 119.99861 * 179.97438 * 10 9 2 13 13 C 1.50703 * 109.46846 * 180.02562 * 12 10 9 14 14 C 1.38325 * 119.96465 * 269.72204 * 13 12 10 15 15 C 1.38280 * 120.13558 * 179.76619 * 14 13 12 16 16 C 1.38130 * 120.06637 * 0.51644 * 15 14 13 17 17 C 1.38855 * 119.93128 * 359.74357 * 16 15 14 18 18 O 1.35750 * 120.06859 * 179.97438 * 17 16 15 19 19 C 1.34837 * 116.99846 * 354.48574 * 18 17 16 20 20 H 1.07996 * 119.99732 * 5.05702 * 19 18 17 21 21 C 1.38654 * 119.99652 * 185.06184 * 19 18 17 22 22 N 1.31562 * 119.99561 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00370 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46896 * 90.00040 * 23 21 19 25 25 H 1.48494 * 109.47005 * 210.00178 * 23 21 19 26 26 H 1.48499 * 109.47071 * 330.00155 * 23 21 19 27 27 C 1.38081 * 119.96235 * 90.00393 * 13 12 10 28 28 H 1.09000 * 109.46799 * 59.99963 * 1 2 3 29 29 H 1.08999 * 109.46603 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46617 * 299.99770 * 1 2 3 31 31 H 1.09000 * 109.47166 * 55.00405 * 4 2 1 32 32 H 1.08998 * 109.47423 * 295.00082 * 4 2 1 33 33 H 1.09001 * 109.47102 * 59.99925 * 5 4 2 34 34 H 1.08998 * 109.47081 * 300.00397 * 5 4 2 35 35 H 1.08996 * 109.47719 * 300.00580 * 7 6 5 36 36 H 1.09007 * 109.46784 * 60.00446 * 7 6 5 37 37 H 1.08997 * 109.47137 * 179.97438 * 7 6 5 38 38 H 0.97006 * 119.99676 * 94.99700 * 9 2 1 39 39 H 1.08990 * 109.47209 * 300.00236 * 12 10 9 40 40 H 1.09000 * 109.46704 * 60.00527 * 12 10 9 41 41 H 1.07989 * 119.93126 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.96990 * 180.25678 * 15 14 13 43 43 H 1.08006 * 120.03307 * 179.71937 * 16 15 14 44 44 H 0.97001 * 120.00099 * 180.02562 * 22 21 19 45 45 H 1.07993 * 120.03345 * 359.95678 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 16 4.1695 -1.4691 -2.7945 7 6 5.9655 -1.2339 -2.6970 8 8 3.6695 -0.8186 -3.9548 9 7 2.0184 -0.6907 1.1961 10 6 2.1472 -0.0184 2.3571 11 8 1.8584 1.1583 2.4117 12 6 2.6490 -0.7290 3.5877 13 6 2.6993 0.2393 4.7414 14 6 3.8500 0.9683 4.9819 15 6 3.8984 1.8613 6.0366 16 6 2.8006 2.0199 6.8599 17 6 1.6460 1.2856 6.6243 18 8 0.5657 1.4390 7.4320 19 6 0.7162 2.2331 8.5112 20 1 1.6374 2.7777 8.6567 21 6 -0.3118 2.3505 9.4342 22 7 -0.1652 3.1258 10.4870 23 14 -1.9054 1.4091 9.1823 24 1 -1.8037 0.0798 9.8364 25 1 -3.0304 2.1709 9.7815 26 1 -2.1489 1.2281 7.7286 27 6 1.5987 0.3934 5.5608 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6054 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9995 -1.0728 -0.4261 34 1 3.8532 0.4369 -1.3574 35 1 6.1935 -0.1681 -2.7066 36 1 6.3405 -1.6773 -1.7744 37 1 6.4420 -1.7155 -3.5509 38 1 2.2491 -1.6319 1.1525 39 1 1.9762 -1.5507 3.8325 40 1 3.6481 -1.1215 3.3984 41 1 4.7109 0.8429 4.3421 42 1 4.7967 2.4321 6.2194 43 1 2.8406 2.7142 7.6863 44 1 -0.8842 3.2077 11.1329 45 1 0.7019 -0.1789 5.3748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760631617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:09 Heat of formation + Delta-G solvation = -115.446076 kcal Electronic energy + Delta-G solvation = -26171.648327 eV Core-core repulsion = 22280.192544 eV Total energy + Delta-G solvation = -3891.455783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19333 -40.52529 -38.44409 -37.32687 -36.77299 -34.48282 -33.80360 -32.98020 -31.14803 -30.81415 -29.69392 -28.33161 -27.16304 -25.01502 -23.44987 -22.90078 -21.81963 -21.35306 -19.65391 -18.89203 -18.33688 -18.00874 -17.28136 -16.86468 -16.71621 -16.27948 -16.02770 -15.78303 -15.66655 -15.62715 -15.53484 -15.03063 -14.73488 -14.58875 -14.38807 -14.23482 -14.13249 -13.89192 -13.76626 -13.51902 -13.15749 -13.02510 -12.83235 -12.76191 -12.55192 -12.50245 -12.42486 -12.32683 -12.12934 -11.92930 -11.88958 -11.31032 -11.04951 -10.92938 -10.81263 -10.01996 -9.64597 -9.17204 -9.05260 -8.50563 -6.23344 0.50593 0.69494 0.71423 1.29200 1.34077 1.50754 1.78295 1.81112 2.27521 2.29897 2.79604 2.91892 3.06692 3.16220 3.76309 3.82243 3.93252 4.05921 4.09142 4.23529 4.30002 4.32203 4.39162 4.48022 4.52816 4.53864 4.57572 4.69356 4.72988 4.74684 4.79806 4.92216 4.99726 5.10335 5.17840 5.19118 5.27011 5.31545 5.39893 5.63551 5.66412 5.73972 5.77319 5.92338 6.26818 6.74274 6.83658 7.46342 7.58947 8.61254 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002024 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.607910 B =13832.190129 C =14715.834373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.050 0.950 4 C -0.103 4.103 5 C -0.449 4.449 6 S 1.304 4.696 7 C -0.492 4.492 8 O -0.932 6.932 9 N -0.706 5.706 10 C 0.512 3.488 11 O -0.585 6.585 12 C -0.090 4.090 13 C -0.027 4.027 14 C -0.171 4.171 15 C -0.080 4.080 16 C -0.243 4.243 17 C 0.117 3.883 18 O -0.248 6.248 19 C -0.399 4.399 20 H 0.078 0.922 21 C 0.007 3.993 22 N -0.924 5.924 23 Si 0.973 3.027 24 H -0.260 1.260 25 H -0.267 1.267 26 H -0.267 1.267 27 C -0.182 4.182 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.148 0.852 37 H 0.110 0.890 38 H 0.423 0.577 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.138 0.862 43 H 0.104 0.896 44 H 0.285 0.715 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.073 -20.595 -26.193 35.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 H 0.068 0.932 4 C -0.142 4.142 5 C -0.586 4.586 6 S 1.505 4.495 7 C -0.650 4.650 8 O -0.928 6.928 9 N -0.361 5.361 10 C 0.300 3.700 11 O -0.464 6.464 12 C -0.129 4.129 13 C -0.027 4.027 14 C -0.189 4.189 15 C -0.098 4.098 16 C -0.262 4.262 17 C 0.068 3.932 18 O -0.155 6.155 19 C -0.476 4.476 20 H 0.096 0.904 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.795 3.205 24 H -0.185 1.185 25 H -0.192 1.192 26 H -0.192 1.192 27 C -0.201 4.201 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.170 0.830 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.166 0.834 37 H 0.129 0.871 38 H 0.262 0.738 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.156 0.844 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.054 -20.235 -26.732 35.002 hybrid contribution 0.032 2.879 0.698 2.962 sum 10.086 -17.357 -26.034 32.875 Atomic orbital electron populations 1.22184 0.95442 1.03358 1.01350 1.20812 0.93722 0.96422 0.84830 0.93157 1.21486 0.92608 1.03990 0.96085 1.27741 1.02993 1.09647 1.18204 1.69478 0.84787 1.13472 0.81806 1.27663 1.20273 1.06375 1.10709 1.93014 1.76182 1.78866 1.44769 1.45834 1.67218 1.14843 1.08158 1.20997 0.76796 0.86811 0.85427 1.90774 1.51163 1.18953 1.85547 1.20739 1.06934 0.97111 0.88103 1.19293 0.92153 0.96795 0.94495 1.21027 0.99124 0.99254 0.99496 1.21116 0.96994 0.97518 0.94213 1.21312 0.95523 1.05134 1.04277 1.19636 0.86860 0.94968 0.91744 1.83506 1.33785 1.63210 1.35044 1.20702 1.04320 1.23571 0.98978 0.90407 1.25310 1.02336 0.97718 0.93693 1.69736 1.35653 1.38956 1.12147 0.85193 0.77445 0.78831 0.79069 1.18469 1.19160 1.19198 1.20312 1.00623 1.02196 0.96991 0.91450 0.89762 0.95158 0.91497 0.85814 0.83005 0.92063 0.92105 0.83400 0.87116 0.73765 0.85252 0.83298 0.83227 0.84418 0.87768 0.90583 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.48 71.98 0.68 -2.05 16 2 C 0.15 2.22 2.57 44.99 0.12 2.34 16 3 H 0.05 1.15 7.58 -2.39 -0.02 1.13 16 4 C -0.10 -0.83 4.76 30.59 0.15 -0.68 16 5 C -0.45 -2.84 5.81 71.98 0.42 -2.42 16 6 S 1.30 7.31 13.80 -56.49 -0.78 6.53 16 7 C -0.49 -2.15 10.74 113.37 1.22 -0.93 16 8 O -0.93 -21.12 18.14 -148.98 -2.70 -23.82 16 9 N -0.71 -8.31 4.53 -442.52 -2.00 -10.32 16 10 C 0.51 11.10 7.79 87.66 0.68 11.79 16 11 O -0.59 -20.67 15.70 -3.04 -0.05 -20.72 16 12 C -0.09 -1.54 5.83 29.10 0.17 -1.37 16 13 C -0.03 -0.82 4.37 -19.88 -0.09 -0.91 16 14 C -0.17 -5.20 9.70 22.30 0.22 -4.98 16 15 C -0.08 -2.94 10.04 22.25 0.22 -2.71 16 16 C -0.24 -11.41 9.17 22.39 0.21 -11.21 16 17 C 0.12 5.80 6.65 22.58 0.15 5.95 16 18 O -0.25 -14.16 8.59 -22.82 -0.20 -14.36 16 19 C -0.40 -24.57 9.95 67.92 0.68 -23.89 16 20 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 21 C 0.01 0.44 5.49 84.83 0.47 0.91 16 22 N -0.92 -56.68 13.96 21.61 0.30 -56.38 16 23 Si 0.97 46.86 28.62 68.60 1.96 48.83 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 27 C -0.18 -7.31 9.65 22.39 0.22 -7.09 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.15 -0.08 7.75 -2.39 -0.02 -0.10 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.15 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.42 0.71 8.60 -92.70 -0.80 -0.08 16 39 H 0.13 1.57 8.08 -2.39 -0.02 1.55 16 40 H 0.15 1.16 8.08 -2.39 -0.02 1.14 16 41 H 0.15 3.26 8.06 -2.92 -0.02 3.24 16 42 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 43 H 0.10 5.37 5.64 -2.91 -0.02 5.35 16 44 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 45 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -98.61 393.58 2.23 -96.38 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.20 Total: 11.12 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 5.50 Total: -37.26 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -1.70 Total: -66.70 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -2.95 Total: -58.89 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.96 Total: 48.83 kcal Atomic # 16 Polarization: 7.31 SS G_CDS: -0.78 Total: 6.53 kcal Total: -98.61 2.23 -96.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760631617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.067 kcal (2) G-P(sol) polarization free energy of solvation -98.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds