Wall clock time and date at job start Wed Apr 1 2020 00:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47142 * 2 1 4 4 C 1.52992 * 109.47283 * 120.00725 * 2 1 3 5 5 C 1.53005 * 109.47385 * 184.99886 * 4 2 1 6 6 S 1.81397 * 109.47229 * 179.97438 * 5 4 2 7 7 C 1.81404 * 102.99696 * 179.97438 * 6 5 4 8 8 O 1.42099 * 109.47077 * 296.38389 * 6 5 4 9 9 N 1.46511 * 109.46930 * 240.00248 * 2 1 3 10 10 C 1.34773 * 119.99751 * 84.99866 * 9 2 1 11 11 O 1.21285 * 120.00390 * 359.72651 * 10 9 2 12 12 C 1.50702 * 119.99636 * 179.72519 * 10 9 2 13 13 C 1.50700 * 109.46913 * 180.02562 * 12 10 9 14 14 C 1.38325 * 119.96816 * 269.72347 * 13 12 10 15 15 C 1.38279 * 120.14228 * 179.76724 * 14 13 12 16 16 C 1.38122 * 120.06291 * 0.51000 * 15 14 13 17 17 C 1.38853 * 119.93227 * 359.74827 * 16 15 14 18 18 O 1.35753 * 120.06784 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00003 * 354.48910 * 18 17 16 20 20 H 1.08000 * 120.00141 * 5.05394 * 19 18 17 21 21 C 1.38663 * 120.00175 * 185.05809 * 19 18 17 22 22 N 1.31552 * 119.99860 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99666 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47386 * 90.00017 * 23 21 19 25 25 H 1.48507 * 109.46888 * 210.00176 * 23 21 19 26 26 H 1.48504 * 109.47435 * 329.99736 * 23 21 19 27 27 C 1.38079 * 119.96613 * 90.00409 * 13 12 10 28 28 H 1.08993 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46697 * 299.99824 * 1 2 3 30 30 H 1.08998 * 109.47009 * 59.99748 * 1 2 3 31 31 H 1.09003 * 109.47251 * 304.99290 * 4 2 1 32 32 H 1.08999 * 109.47911 * 64.99303 * 4 2 1 33 33 H 1.08998 * 109.46488 * 299.99429 * 5 4 2 34 34 H 1.09002 * 109.46834 * 59.99637 * 5 4 2 35 35 H 1.08996 * 109.47070 * 60.00012 * 7 6 5 36 36 H 1.09001 * 109.47025 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47141 * 299.99609 * 7 6 5 38 38 H 0.96994 * 119.99724 * 264.72648 * 9 2 1 39 39 H 1.08998 * 109.47222 * 300.00141 * 12 10 9 40 40 H 1.08999 * 109.47062 * 60.00281 * 12 10 9 41 41 H 1.08005 * 119.92701 * 0.02562 * 14 13 12 42 42 H 1.07995 * 119.96749 * 180.25475 * 15 14 13 43 43 H 1.08009 * 120.03132 * 179.72158 * 16 15 14 44 44 H 0.96997 * 119.99685 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03569 * 359.94714 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 16 4.1695 -1.4681 2.7949 7 6 5.9657 -1.2343 2.6963 8 8 3.6696 -0.8168 3.9547 9 7 2.0183 -0.6906 -1.1963 10 6 2.1470 -0.0182 -2.3572 11 8 1.8538 1.1574 -2.4129 12 6 2.6552 -0.7271 -3.5862 13 6 2.7052 0.2412 -4.7399 14 6 1.6065 0.3872 -5.5675 15 6 1.6467 1.2781 -6.6243 16 6 2.7887 2.0175 -6.8629 17 6 3.8951 1.8693 -6.0371 18 8 5.0191 2.5942 -6.2694 19 6 5.0380 3.3544 -7.3828 20 1 4.1547 3.4312 -7.9993 21 6 6.1917 4.0377 -7.7363 22 7 6.2102 4.7790 -8.8229 23 14 7.7194 3.9054 -6.6696 24 1 8.5500 2.7651 -7.1336 25 1 8.5037 5.1624 -6.7703 26 1 7.3191 3.6835 -5.2569 27 6 3.8497 0.9774 -4.9733 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.9994 -1.0730 0.4258 34 1 3.8533 0.4368 1.3573 35 1 6.1944 -0.1686 2.7048 36 1 6.4422 -1.7154 3.5505 37 1 6.3399 -1.6789 1.7741 38 1 2.2528 -1.6307 -1.1518 39 1 3.6555 -1.1150 -3.3943 40 1 1.9866 -1.5519 -3.8323 41 1 0.7138 -0.1929 -5.3854 42 1 0.7858 1.3928 -7.2662 43 1 2.8211 2.7099 -7.6912 44 1 7.0171 5.2572 -9.0700 45 1 4.7086 0.8604 -4.3290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760631623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:14 Heat of formation + Delta-G solvation = -84.709166 kcal Electronic energy + Delta-G solvation = -26265.539634 eV Core-core repulsion = 22375.416703 eV Total energy + Delta-G solvation = -3890.122931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.04514 -38.99886 -37.02786 -36.27229 -36.05803 -32.82872 -32.37590 -31.92656 -30.23124 -29.39649 -29.30518 -27.07027 -25.15621 -24.39886 -22.10553 -21.58669 -20.82280 -20.18590 -17.88582 -17.70539 -17.24053 -17.05080 -16.48331 -15.76159 -15.40308 -15.20273 -15.13047 -15.07542 -14.54211 -14.11626 -13.96161 -13.89324 -13.68704 -13.60736 -13.40081 -13.25830 -12.98949 -12.62050 -12.49866 -12.38544 -12.31876 -12.14718 -11.95252 -11.67500 -11.61662 -11.29946 -11.25897 -10.82879 -10.78582 -10.70261 -10.44630 -10.14571 -9.76013 -9.36409 -9.20499 -8.84811 -8.67825 -8.11926 -7.32975 -6.38606 -4.05147 1.09292 2.03658 2.17900 2.31613 2.72839 3.13596 3.23543 3.25879 3.36442 3.41664 4.25823 4.30842 4.46524 4.48389 4.55286 4.69962 4.74537 4.80985 4.95629 5.04058 5.09744 5.15707 5.18817 5.21719 5.33806 5.36477 5.49130 5.50030 5.57667 5.61177 5.70237 5.81796 5.86862 5.99638 6.14510 6.27683 6.38518 6.55643 6.81586 7.12530 7.23810 7.34509 7.42551 7.64052 7.83960 8.07417 8.28848 8.97013 9.60285 10.69365 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.002462 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.409701 B =11369.826122 C =13280.224210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.087 0.913 4 C -0.105 4.105 5 C -0.449 4.449 6 S 1.240 4.760 7 C -0.490 4.490 8 O -0.854 6.854 9 N -0.733 5.733 10 C 0.513 3.487 11 O -0.518 6.518 12 C -0.094 4.094 13 C -0.035 4.035 14 C -0.188 4.188 15 C -0.076 4.076 16 C -0.218 4.218 17 C 0.160 3.840 18 O -0.220 6.220 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.175 4.175 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.398 0.602 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 -20.554 19.625 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.586 4.586 6 S 1.439 4.561 7 C -0.647 4.647 8 O -0.850 6.850 9 N -0.387 5.387 10 C 0.299 3.701 11 O -0.392 6.392 12 C -0.134 4.134 13 C -0.035 4.035 14 C -0.207 4.207 15 C -0.094 4.094 16 C -0.237 4.237 17 C 0.108 3.892 18 O -0.125 6.125 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.194 4.194 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.232 0.768 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.763 -19.945 20.285 29.241 hybrid contribution 1.424 1.960 0.142 2.427 sum -5.339 -17.985 20.428 27.735 Atomic orbital electron populations 1.22184 0.95140 1.02159 1.02814 1.20888 0.93936 0.97650 0.83483 0.89521 1.21483 0.92330 1.02004 0.98600 1.27706 1.03181 1.11018 1.16684 1.70347 0.85574 1.15801 0.84408 1.27631 1.21125 1.07416 1.08556 1.93142 1.73763 1.77406 1.40652 1.46113 1.69043 1.13915 1.09667 1.20768 0.77566 0.87564 0.84199 1.90769 1.47974 1.15949 1.84506 1.20596 1.03197 0.98148 0.91444 1.18657 0.93764 0.96613 0.94505 1.20418 0.97800 1.03751 0.98727 1.20740 0.96868 0.95186 0.96637 1.21296 0.93942 1.04903 1.03551 1.19012 0.86780 0.90032 0.93337 1.83566 1.33742 1.52582 1.42625 1.20767 1.01437 1.24388 0.99780 0.87651 1.24451 0.98325 0.95197 0.96047 1.69645 1.29823 1.29309 1.23203 0.86192 0.81500 0.77616 0.81650 1.19900 1.20820 1.18448 1.19927 0.98917 1.00465 1.00140 0.92321 0.91803 0.91705 0.89951 0.90069 0.86265 0.89347 0.90048 0.87633 0.86782 0.76824 0.88322 0.88278 0.87740 0.87190 0.85012 0.91119 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.15 1.25 2.57 -67.93 -0.17 1.08 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 4 C -0.11 -0.61 4.76 -26.73 -0.13 -0.73 16 5 C -0.45 -2.47 5.81 37.16 0.22 -2.26 16 6 S 1.24 5.88 13.80 -107.50 -1.48 4.39 16 7 C -0.49 -2.31 10.74 101.05 1.09 -1.23 16 8 O -0.85 -10.39 18.14 -35.23 -0.64 -11.03 16 9 N -0.73 -5.90 4.53 -53.80 -0.24 -6.15 16 10 C 0.51 6.49 7.79 -10.99 -0.09 6.40 16 11 O -0.52 -9.43 15.70 5.55 0.09 -9.35 16 12 C -0.09 -1.07 5.83 -29.03 -0.17 -1.24 16 13 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 14 C -0.19 -3.23 9.70 -39.53 -0.38 -3.61 16 15 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 16 C -0.22 -4.88 9.17 -39.40 -0.36 -5.24 16 17 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.22 -5.96 8.59 0.04 0.00 -5.96 16 19 C -0.39 -11.17 9.95 30.89 0.31 -10.86 16 20 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 21 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 22 N -0.88 -25.85 13.96 55.48 0.77 -25.08 16 23 Si 0.90 22.03 28.62 -169.99 -4.86 17.16 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.18 -3.56 9.64 -39.40 -0.38 -3.94 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.12 0.41 7.75 -51.93 -0.40 0.01 16 34 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.11 0.28 8.14 -51.92 -0.42 -0.15 16 38 H 0.40 1.64 8.60 -40.82 -0.35 1.29 16 39 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 41 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.13 3.08 5.64 -52.48 -0.30 2.78 16 44 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -40.21 393.58 -8.14 -48.36 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.78 Total: 1.98 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -0.93 Total: -20.28 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.53 Total: -31.22 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.55 Total: -26.33 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.16 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.48 Total: 4.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -40.21 -8.14 -48.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760631623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.349 kcal (2) G-P(sol) polarization free energy of solvation -40.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds