Wall clock time and date at job start Wed Apr 1 2020 00:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46620 * 2 1 4 4 C 1.52993 * 109.46853 * 119.99589 * 2 1 3 5 5 C 1.53001 * 109.47174 * 185.00063 * 4 2 1 6 6 S 1.81402 * 109.47302 * 180.02562 * 5 4 2 7 7 C 1.81395 * 102.99844 * 180.02562 * 6 5 4 8 8 O 1.42094 * 109.47048 * 63.61309 * 6 5 4 9 9 N 1.46497 * 109.47013 * 239.99789 * 2 1 3 10 10 C 1.34779 * 120.00029 * 85.00238 * 9 2 1 11 11 O 1.21280 * 119.99730 * 359.97438 * 10 9 2 12 12 C 1.50697 * 119.99832 * 179.97438 * 10 9 2 13 13 C 1.50703 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.38326 * 119.96036 * 269.72148 * 13 12 10 15 15 C 1.38280 * 120.13593 * 180.27023 * 14 13 12 16 16 C 1.38125 * 120.06813 * 0.02562 * 15 14 13 17 17 C 1.38857 * 119.92941 * 359.97438 * 16 15 14 18 18 O 1.35759 * 120.06714 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99718 * 354.48542 * 18 17 16 20 20 H 1.07998 * 120.00057 * 5.06548 * 19 18 17 21 21 C 1.38654 * 119.99581 * 185.05723 * 19 18 17 22 22 N 1.31561 * 120.00320 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46759 * 60.00279 * 23 21 19 25 25 H 1.48492 * 109.47092 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47168 * 300.00453 * 23 21 19 27 27 C 1.38074 * 119.96544 * 90.00097 * 13 12 10 28 28 H 1.08992 * 109.47211 * 300.00613 * 1 2 3 29 29 H 1.09003 * 109.46639 * 60.00062 * 1 2 3 30 30 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47623 * 305.00299 * 4 2 1 32 32 H 1.08999 * 109.47169 * 65.00444 * 4 2 1 33 33 H 1.08998 * 109.47331 * 300.00159 * 5 4 2 34 34 H 1.08999 * 109.46761 * 60.00131 * 5 4 2 35 35 H 1.09003 * 109.47558 * 60.00018 * 7 6 5 36 36 H 1.09007 * 109.47235 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47444 * 299.99727 * 7 6 5 38 38 H 0.97001 * 119.99807 * 264.99679 * 9 2 1 39 39 H 1.08996 * 109.47426 * 60.00133 * 12 10 9 40 40 H 1.08994 * 109.47220 * 299.99909 * 12 10 9 41 41 H 1.07995 * 119.93590 * 0.26096 * 14 13 12 42 42 H 1.07998 * 119.96668 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.03457 * 179.97438 * 16 15 14 44 44 H 0.96999 * 119.99759 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03806 * 359.69747 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 16 4.1695 -1.4689 2.7946 7 6 5.9655 -1.2336 2.6970 8 8 3.8668 -2.8539 2.6981 9 7 2.0184 -0.6906 -1.1961 10 6 2.1471 -0.0183 -2.3571 11 8 1.8583 1.1583 -2.4117 12 6 2.6500 -0.7287 -3.5874 13 6 2.7012 0.2398 -4.7409 14 6 1.6013 0.3901 -5.5661 15 6 1.6462 1.2735 -6.6289 16 6 2.7906 2.0084 -6.8700 17 6 3.8964 1.8597 -6.0434 18 8 5.0229 2.5803 -6.2781 19 6 5.0444 3.3363 -7.3943 20 1 4.1613 3.4136 -8.0112 21 6 6.2003 4.0145 -7.7500 22 7 7.2761 3.9199 -6.9987 23 14 6.2300 5.0625 -9.2961 24 1 5.2052 6.1318 -9.1890 25 1 7.5728 5.6769 -9.4518 26 1 5.9357 4.2113 -10.4768 27 6 3.8480 0.9718 -4.9764 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.6054 -0.2616 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0727 0.4261 34 1 3.8531 0.4371 1.3574 35 1 6.1935 -0.1677 2.7066 36 1 6.4420 -1.7152 3.5509 37 1 6.3405 -1.6770 1.7745 38 1 2.2491 -1.6318 -1.1525 39 1 1.9778 -1.5509 -3.8325 40 1 3.6493 -1.1205 -3.3978 41 1 0.7055 -0.1838 -5.3800 42 1 0.7857 1.3890 -7.2712 43 1 2.8253 2.6980 -7.7005 44 1 8.0845 4.3947 -7.2474 45 1 4.7064 0.8542 -4.3316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760631624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:17 Heat of formation + Delta-G solvation = -86.326413 kcal Electronic energy + Delta-G solvation = -26235.397154 eV Core-core repulsion = 22345.204095 eV Total energy + Delta-G solvation = -3890.193060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.95683 -38.82934 -36.89214 -36.15045 -35.99597 -32.75197 -32.28458 -31.80165 -30.16778 -29.26860 -29.11308 -26.97934 -25.21685 -24.33994 -21.99895 -21.51971 -20.79047 -20.20690 -17.84068 -17.63581 -17.10117 -16.91578 -16.40001 -15.59415 -15.37814 -15.30279 -14.96142 -14.86725 -14.38717 -14.24267 -14.04372 -13.86482 -13.59915 -13.45415 -13.33280 -13.18117 -12.92287 -12.56525 -12.48773 -12.32712 -12.18417 -11.93373 -11.77648 -11.65700 -11.49233 -11.22903 -11.16122 -10.79145 -10.74814 -10.58366 -10.43463 -10.40192 -9.68350 -9.29897 -9.11885 -8.79330 -8.62063 -8.01759 -7.17155 -6.40266 -3.99288 1.14647 2.14096 2.23613 2.44133 2.80315 3.15431 3.15986 3.19397 3.23593 3.41768 4.00291 4.38821 4.52363 4.54648 4.62485 4.75623 4.87102 4.94312 5.12213 5.12632 5.14902 5.23072 5.26260 5.28539 5.38198 5.51674 5.53005 5.55896 5.66526 5.70921 5.78911 5.88127 5.97919 6.04180 6.22155 6.38074 6.46052 6.70614 6.96374 7.11493 7.31453 7.41321 7.47656 7.49807 7.87749 8.04944 8.35559 9.05521 9.76744 10.78068 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.002241 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.267395 B =12490.761559 C =13997.059763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 H 0.092 0.908 4 C -0.106 4.106 5 C -0.449 4.449 6 S 1.239 4.761 7 C -0.489 4.489 8 O -0.855 6.855 9 N -0.735 5.735 10 C 0.515 3.485 11 O -0.518 6.518 12 C -0.096 4.096 13 C -0.032 4.032 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.866 5.866 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.175 4.175 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 -9.493 20.094 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.145 4.145 5 C -0.586 4.586 6 S 1.438 4.562 7 C -0.647 4.647 8 O -0.850 6.850 9 N -0.389 5.389 10 C 0.301 3.699 11 O -0.392 6.392 12 C -0.136 4.136 13 C -0.032 4.032 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.501 5.501 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.194 4.194 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.441 -8.995 20.867 24.607 hybrid contribution 1.091 -0.749 -2.757 3.058 sum -8.350 -9.744 18.111 22.196 Atomic orbital electron populations 1.22192 0.95213 1.02063 1.02837 1.20915 0.93873 0.97719 0.83525 0.89027 1.21494 0.92335 1.01906 0.98746 1.27708 1.02966 1.11319 1.16620 1.70392 0.87814 0.94476 1.03547 1.27628 1.21125 1.08618 1.07323 1.93130 1.78728 1.30785 1.82407 1.46162 1.69083 1.13857 1.09827 1.20731 0.77433 0.87567 0.84149 1.90751 1.48088 1.15740 1.84571 1.20605 1.03122 0.98195 0.91630 1.18650 0.93796 0.96436 0.94344 1.20344 0.97768 1.04396 0.99026 1.20679 0.96714 0.95350 0.96554 1.21171 0.94306 1.05621 1.03914 1.19272 0.87358 0.90121 0.93103 1.83977 1.31725 1.51402 1.41281 1.21271 0.99420 1.25447 1.00572 0.89186 1.25270 0.94253 0.97869 0.99132 1.70034 1.01913 1.40765 1.37385 0.85792 0.77927 0.79526 0.80243 1.19519 1.20318 1.19548 1.19924 0.98725 1.00523 1.00244 0.91573 0.91731 0.92590 0.89162 0.90899 0.89315 0.86106 0.86777 0.87662 0.90014 0.77007 0.88473 0.88506 0.87983 0.87478 0.85618 0.92075 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.15 1.32 2.57 -67.93 -0.17 1.15 16 3 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 4 C -0.11 -0.66 4.76 -26.73 -0.13 -0.79 16 5 C -0.45 -2.73 5.81 37.16 0.22 -2.51 16 6 S 1.24 6.47 13.80 -107.50 -1.48 4.98 16 7 C -0.49 -2.58 10.74 101.05 1.09 -1.50 16 8 O -0.86 -10.44 18.14 -35.23 -0.64 -11.08 16 9 N -0.74 -7.62 4.53 -53.81 -0.24 -7.86 16 10 C 0.51 7.46 7.79 -10.99 -0.09 7.37 16 11 O -0.52 -9.94 15.70 5.56 0.09 -9.85 16 12 C -0.10 -1.32 5.83 -29.03 -0.17 -1.49 16 13 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 14 C -0.20 -3.65 9.70 -39.53 -0.38 -4.03 16 15 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 16 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 17 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 18 O -0.18 -5.33 9.76 0.02 0.00 -5.33 16 19 C -0.39 -11.25 9.49 30.89 0.29 -10.95 16 20 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.87 -25.90 13.67 55.48 0.76 -25.14 16 23 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.17 -3.91 9.64 -39.40 -0.38 -4.29 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.70 7.75 -51.92 -0.40 0.30 16 34 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.37 8.14 -51.92 -0.42 -0.06 16 36 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.40 3.21 8.60 -40.82 -0.35 2.86 16 39 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 41 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 45 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -40.51 394.70 -8.31 -48.81 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.76 Total: 5.60 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.95 Total: -22.03 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.51 Total: -33.00 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.55 Total: -26.25 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.48 Total: 4.98 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -40.51 -8.31 -48.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760631624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.514 kcal (2) G-P(sol) polarization free energy of solvation -40.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds