Wall clock time and date at job start Wed Apr 1 2020 00:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47226 * 2 1 4 4 C 1.52999 * 109.47031 * 240.00125 * 2 1 3 5 5 C 1.52996 * 109.47218 * 175.00087 * 4 2 1 6 6 S 1.81397 * 109.47544 * 179.97438 * 5 4 2 7 7 C 1.81397 * 103.00443 * 180.02562 * 6 5 4 8 8 O 1.42105 * 109.46995 * 296.38952 * 6 5 4 9 9 N 1.46496 * 109.46831 * 120.00410 * 2 1 3 10 10 C 1.34779 * 119.99724 * 274.99337 * 9 2 1 11 11 O 1.21283 * 120.00275 * 0.02562 * 10 9 2 12 12 C 1.50701 * 119.99946 * 179.97438 * 10 9 2 13 13 C 1.50702 * 109.47299 * 180.02562 * 12 10 9 14 14 C 1.38318 * 119.96702 * 269.73105 * 13 12 10 15 15 C 1.38279 * 120.13944 * 179.76203 * 14 13 12 16 16 C 1.38118 * 120.06797 * 0.51117 * 15 14 13 17 17 C 1.38859 * 119.92890 * 359.74452 * 16 15 14 18 18 O 1.35751 * 120.06606 * 179.97438 * 17 16 15 19 19 C 1.34821 * 117.00581 * 354.48909 * 18 17 16 20 20 H 1.08009 * 119.99768 * 5.05568 * 19 18 17 21 21 C 1.38659 * 120.00750 * 185.05676 * 19 18 17 22 22 N 1.31553 * 120.00631 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99322 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46899 * 90.00233 * 23 21 19 25 25 H 1.48503 * 109.46851 * 209.99653 * 23 21 19 26 26 H 1.48500 * 109.47406 * 329.99843 * 23 21 19 27 27 C 1.38081 * 119.96300 * 90.00276 * 13 12 10 28 28 H 1.09006 * 109.46762 * 59.99793 * 1 2 3 29 29 H 1.08996 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47058 * 299.99985 * 1 2 3 31 31 H 1.08998 * 109.47247 * 55.00318 * 4 2 1 32 32 H 1.09005 * 109.46905 * 295.00334 * 4 2 1 33 33 H 1.09004 * 109.47248 * 60.00080 * 5 4 2 34 34 H 1.09005 * 109.47384 * 299.99953 * 5 4 2 35 35 H 1.08997 * 109.47233 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46970 * 300.00000 * 7 6 5 37 37 H 1.09000 * 109.47168 * 59.99748 * 7 6 5 38 38 H 0.96995 * 120.00459 * 95.00386 * 9 2 1 39 39 H 1.08996 * 109.47660 * 300.00794 * 12 10 9 40 40 H 1.09006 * 109.46657 * 60.00787 * 12 10 9 41 41 H 1.08005 * 119.93071 * 359.97438 * 14 13 12 42 42 H 1.08005 * 119.97003 * 180.25237 * 15 14 13 43 43 H 1.08005 * 120.03697 * 179.71822 * 16 15 14 44 44 H 0.96993 * 120.00126 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.03265 * 359.95725 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 16 4.1696 -1.4690 -2.7944 7 6 5.9657 -1.2352 -2.6960 8 8 3.8668 -2.8541 -2.6979 9 7 2.0183 -0.6907 1.1961 10 6 2.1471 -0.0183 2.3571 11 8 1.8583 1.1584 2.4117 12 6 2.6488 -0.7289 3.5877 13 6 2.6991 0.2393 4.7415 14 6 3.8497 0.9683 4.9819 15 6 3.8981 1.8613 6.0366 16 6 2.8005 2.0201 6.8598 17 6 1.6458 1.2858 6.6243 18 8 0.5656 1.4392 7.4320 19 6 0.7159 2.2334 8.5110 20 1 1.6372 2.7780 8.6566 21 6 -0.3121 2.3510 9.4341 22 7 -0.1652 3.1255 10.4873 23 14 -1.9052 1.4085 9.1828 24 1 -1.8028 0.0798 9.8379 25 1 -3.0306 2.1702 9.7815 26 1 -2.1486 1.2264 7.7292 27 6 1.5985 0.3935 5.5609 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2617 -2.1370 32 1 1.7515 -1.7715 -1.2056 33 1 3.9994 -1.0729 -0.4260 34 1 3.8532 0.4370 -1.3574 35 1 6.4422 -1.7168 -3.5498 36 1 6.1944 -0.1695 -2.7053 37 1 6.3399 -1.6790 -1.7735 38 1 2.2490 -1.6318 1.1526 39 1 1.9759 -1.5507 3.8325 40 1 3.6479 -1.1215 3.3985 41 1 4.7110 0.8424 4.3425 42 1 4.7966 2.4322 6.2194 43 1 2.8405 2.7144 7.6862 44 1 -0.8844 3.2081 11.1327 45 1 0.7016 -0.1788 5.3748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760631625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:20 Heat of formation + Delta-G solvation = -113.876069 kcal Electronic energy + Delta-G solvation = -26216.847191 eV Core-core repulsion = 22325.459488 eV Total energy + Delta-G solvation = -3891.387703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24861 -40.56876 -38.48305 -37.33566 -36.73427 -34.50160 -33.85282 -33.02207 -31.17713 -30.81857 -29.68746 -28.39685 -27.18544 -24.99924 -23.48800 -22.93652 -21.82019 -21.39254 -19.67992 -18.92500 -18.32991 -18.10265 -17.28255 -16.90616 -16.75861 -16.25307 -16.00212 -15.93344 -15.73318 -15.61232 -15.47494 -15.03770 -14.78795 -14.66272 -14.40463 -14.19270 -14.12329 -13.94329 -13.77165 -13.51204 -13.12981 -13.04702 -12.85543 -12.75680 -12.54393 -12.53262 -12.46255 -12.38114 -12.20289 -11.95537 -11.82630 -11.33759 -11.05129 -10.95157 -10.85910 -10.06314 -9.69530 -9.13485 -9.09230 -8.52038 -6.24767 0.46009 0.67159 0.69896 1.27678 1.32216 1.49020 1.68863 1.82248 2.25047 2.25908 2.76934 2.92959 3.02273 3.12749 3.72620 3.81593 3.92596 4.03917 4.05576 4.15744 4.25920 4.30759 4.38240 4.44858 4.52275 4.53649 4.54108 4.59357 4.67154 4.74641 4.82899 4.90962 4.93959 5.10439 5.17949 5.20870 5.22513 5.33782 5.36855 5.60374 5.62086 5.69492 5.74379 5.89268 6.22158 6.57959 6.82117 7.32022 7.56905 8.59689 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021654 B = 0.002050 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.747689 B =13653.468334 C =14492.693795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 H 0.078 0.922 4 C -0.104 4.104 5 C -0.450 4.450 6 S 1.297 4.703 7 C -0.491 4.491 8 O -0.927 6.927 9 N -0.717 5.717 10 C 0.515 3.485 11 O -0.573 6.573 12 C -0.095 4.095 13 C -0.026 4.026 14 C -0.171 4.171 15 C -0.076 4.076 16 C -0.240 4.240 17 C 0.119 3.881 18 O -0.247 6.247 19 C -0.400 4.400 20 H 0.080 0.920 21 C 0.009 3.991 22 N -0.922 5.922 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.265 1.265 26 H -0.268 1.268 27 C -0.183 4.183 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.143 0.857 35 H 0.109 0.891 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.410 0.590 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.108 0.892 44 H 0.285 0.715 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 -9.469 -32.453 35.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.097 0.903 4 C -0.142 4.142 5 C -0.587 4.587 6 S 1.498 4.502 7 C -0.650 4.650 8 O -0.922 6.922 9 N -0.371 5.371 10 C 0.303 3.697 11 O -0.452 6.452 12 C -0.134 4.134 13 C -0.027 4.027 14 C -0.190 4.190 15 C -0.094 4.094 16 C -0.259 4.259 17 C 0.070 3.930 18 O -0.155 6.155 19 C -0.476 4.476 20 H 0.098 0.902 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.189 1.189 26 H -0.193 1.193 27 C -0.202 4.202 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.161 0.839 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.247 0.753 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.972 -9.152 -32.956 35.361 hybrid contribution 0.399 -1.023 2.895 3.096 sum 9.371 -10.175 -30.061 33.091 Atomic orbital electron populations 1.22191 0.95374 1.02453 1.02296 1.21040 0.93802 0.97321 0.84044 0.90335 1.21519 0.92877 1.01446 0.98393 1.27723 1.02492 1.12482 1.16010 1.69689 0.87185 0.91383 1.01950 1.27652 1.20228 1.10447 1.06644 1.93015 1.80675 1.34765 1.83785 1.46062 1.67357 1.14429 1.09207 1.20802 0.76922 0.86895 0.85125 1.90753 1.50859 1.18166 1.85405 1.20718 1.06169 0.97399 0.89112 1.19190 0.92473 0.96726 0.94323 1.20986 0.98853 0.99403 0.99728 1.21115 0.97106 0.97292 0.93924 1.21323 0.95328 1.05039 1.04248 1.19588 0.86953 0.94826 0.91589 1.83506 1.33732 1.63212 1.35056 1.20714 1.04394 1.23569 0.98950 0.90205 1.25280 1.02248 0.97679 0.93694 1.69723 1.35610 1.38896 1.12066 0.85223 0.77660 0.78787 0.79043 1.18751 1.18928 1.19262 1.20254 1.00446 1.02348 0.97171 0.89341 0.91772 0.95183 0.85966 0.91508 0.90719 0.83926 0.87212 0.83964 0.91694 0.75347 0.86086 0.84477 0.83504 0.84056 0.87394 0.90537 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.48 71.98 0.68 -1.94 16 2 C 0.14 2.09 2.57 44.99 0.12 2.21 16 3 H 0.08 1.41 7.58 -2.39 -0.02 1.39 16 4 C -0.10 -0.81 4.76 30.59 0.15 -0.67 16 5 C -0.45 -2.75 5.81 71.98 0.42 -2.34 16 6 S 1.30 7.28 13.80 -56.49 -0.78 6.50 16 7 C -0.49 -2.22 10.74 113.37 1.22 -1.01 16 8 O -0.93 -19.74 18.14 -148.98 -2.70 -22.44 16 9 N -0.72 -11.85 4.53 -442.54 -2.00 -13.85 16 10 C 0.52 12.73 7.79 87.66 0.68 13.41 16 11 O -0.57 -20.37 15.70 -3.04 -0.05 -20.42 16 12 C -0.09 -2.06 5.83 29.10 0.17 -1.89 16 13 C -0.03 -0.88 4.37 -19.88 -0.09 -0.96 16 14 C -0.17 -5.49 9.70 22.30 0.22 -5.27 16 15 C -0.08 -2.83 10.04 22.25 0.22 -2.60 16 16 C -0.24 -11.33 9.17 22.39 0.21 -11.12 16 17 C 0.12 6.02 6.65 22.58 0.15 6.17 16 18 O -0.25 -14.28 8.59 -22.66 -0.19 -14.47 16 19 C -0.40 -24.67 9.95 67.92 0.68 -23.99 16 20 H 0.08 5.15 5.44 -2.91 -0.02 5.13 16 21 C 0.01 0.55 5.49 84.84 0.47 1.02 16 22 N -0.92 -56.57 13.96 21.61 0.30 -56.27 16 23 Si 0.97 47.23 28.62 68.60 1.96 49.19 16 24 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 27 C -0.18 -7.67 9.65 22.39 0.22 -7.45 16 28 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.07 0.71 7.75 -2.39 -0.02 0.69 16 34 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.14 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.41 4.66 8.60 -92.71 -0.80 3.86 16 39 H 0.12 2.17 8.08 -2.39 -0.02 2.15 16 40 H 0.14 1.93 8.08 -2.38 -0.02 1.91 16 41 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 42 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.11 5.53 5.64 -2.91 -0.02 5.51 16 44 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 45 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -92.96 393.58 2.23 -90.73 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.20 Total: 17.47 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 5.50 Total: -36.44 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.70 Total: -70.12 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -2.94 Total: -57.33 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.96 Total: 49.19 kcal Atomic # 16 Polarization: 7.28 SS G_CDS: -0.78 Total: 6.50 kcal Total: -92.96 2.23 -90.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760631625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.150 kcal (2) G-P(sol) polarization free energy of solvation -92.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds