Wall clock time and date at job start Wed Apr 1 2020 00:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47009 * 240.00301 * 2 1 3 5 5 C 1.52999 * 109.47377 * 174.99826 * 4 2 1 6 6 S 1.81402 * 109.47371 * 179.97438 * 5 4 2 7 7 C 1.81404 * 101.91919 * 180.02562 * 6 5 4 8 8 O 1.42098 * 108.57924 * 294.48882 * 6 5 4 9 9 O 1.42100 * 108.57392 * 65.51274 * 6 5 4 10 10 N 1.46500 * 109.47217 * 120.00314 * 2 1 3 11 11 C 1.34778 * 119.99859 * 275.00009 * 10 2 1 12 12 O 1.21285 * 120.00030 * 359.97438 * 11 10 2 13 13 C 1.50700 * 119.99673 * 179.97438 * 11 10 2 14 14 C 1.50694 * 109.46805 * 179.97438 * 13 11 10 15 15 C 1.37638 * 120.13181 * 264.99965 * 14 13 11 16 16 C 1.38610 * 120.25017 * 179.97438 * 15 14 13 17 17 C 1.38660 * 120.50181 * 0.02635 * 16 15 14 18 18 C 1.37592 * 120.24995 * 0.02562 * 17 16 15 19 19 C 1.40705 * 120.12600 * 84.72763 * 14 13 11 20 20 C 1.41390 * 120.24190 * 359.97438 * 19 14 13 21 21 H 1.07999 * 119.99997 * 333.89496 * 20 19 14 22 22 C 1.39949 * 119.99976 * 153.90073 * 20 19 14 23 23 N 1.30825 * 120.00203 * 343.70663 * 22 20 19 24 24 Si 1.86806 * 120.00143 * 163.70906 * 22 20 19 25 25 H 1.48502 * 109.46878 * 89.99476 * 24 22 20 26 26 H 1.48494 * 109.47112 * 209.99590 * 24 22 20 27 27 H 1.48500 * 109.47045 * 329.99783 * 24 22 20 28 28 H 1.09002 * 109.46953 * 59.99873 * 1 2 3 29 29 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46930 * 299.99949 * 1 2 3 31 31 H 1.08996 * 109.47070 * 295.00115 * 4 2 1 32 32 H 1.09000 * 109.47145 * 54.99951 * 4 2 1 33 33 H 1.09000 * 109.46769 * 300.00205 * 5 4 2 34 34 H 1.09000 * 109.46881 * 59.99963 * 5 4 2 35 35 H 1.08992 * 109.47182 * 60.00227 * 7 6 5 36 36 H 1.08999 * 109.46701 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.46622 * 299.99711 * 7 6 5 38 38 H 0.96995 * 119.99702 * 94.99653 * 10 2 1 39 39 H 1.08994 * 109.47103 * 300.00184 * 13 11 10 40 40 H 1.09004 * 109.47196 * 60.00346 * 13 11 10 41 41 H 1.08002 * 119.87667 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.75176 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.87437 * 180.02562 * 17 16 15 44 44 H 1.07998 * 120.13271 * 179.97438 * 18 17 16 45 45 H 0.96991 * 120.00531 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 16 4.1696 -1.4690 -2.7946 7 6 5.9616 -1.2175 -2.6672 8 8 3.8969 -2.8569 -2.6586 9 8 3.6953 -0.7779 -3.9421 10 7 2.0184 -0.6907 1.1961 11 6 2.1472 -0.0183 2.3571 12 8 1.8591 1.1585 2.4115 13 6 2.6490 -0.7290 3.5877 14 6 2.7004 0.2394 4.7411 15 6 3.8733 0.8935 5.0423 16 6 3.9232 1.7852 6.1023 17 6 2.7952 2.0285 6.8711 18 6 1.6121 1.3852 6.5889 19 6 1.5479 0.4828 5.5107 20 6 0.3358 -0.1785 5.2067 21 1 0.1452 -0.5211 4.2004 22 6 -0.6171 -0.3892 6.2098 23 7 -0.2785 -0.2741 7.4683 24 14 -2.3725 -0.8349 5.7520 25 1 -2.5014 -2.3117 5.6644 26 1 -3.3010 -0.3175 6.7889 27 1 -2.7102 -0.2298 4.4386 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7714 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0728 -0.4262 35 1 6.3253 -1.6591 -1.7395 36 1 6.4562 -1.6923 -3.5145 37 1 6.1797 -0.1495 -2.6713 38 1 2.2491 -1.6318 1.1525 39 1 1.9761 -1.5508 3.8324 40 1 3.6481 -1.1215 3.3985 41 1 4.7580 0.7120 4.4500 42 1 4.8480 2.2938 6.3318 43 1 2.8454 2.7257 7.6944 44 1 0.7348 1.5758 7.1891 45 1 -0.9387 -0.4205 8.1635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776980273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:25 Heat of formation + Delta-G solvation = -101.830800 kcal Electronic energy + Delta-G solvation = -27212.623398 eV Core-core repulsion = 23321.758017 eV Total energy + Delta-G solvation = -3890.865381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.49630 -37.56478 -37.29882 -36.40897 -36.14321 -33.61735 -32.52538 -31.64704 -30.23018 -29.76798 -29.42779 -26.73392 -25.03992 -24.47489 -21.58728 -20.92648 -20.36806 -19.35730 -19.18425 -17.21984 -17.02823 -16.71927 -16.42637 -16.24245 -15.91606 -15.41324 -14.69163 -14.59147 -14.29077 -13.91183 -13.71905 -13.60623 -13.57607 -13.41896 -13.11814 -12.87203 -12.58250 -12.40910 -12.31329 -12.20174 -11.96932 -11.78866 -11.68862 -11.56571 -11.43305 -11.24376 -11.11887 -10.97936 -10.94872 -10.70913 -10.56902 -10.39704 -9.48809 -9.38176 -9.17806 -9.13989 -8.77552 -7.31292 -7.28855 -6.73232 -4.33887 -0.38175 2.37385 2.78893 2.96746 3.07027 3.11927 3.25223 3.26991 3.31622 3.61179 3.65102 3.93995 4.20982 4.32374 4.38783 4.60677 4.63294 4.66845 5.15073 5.18368 5.24972 5.34919 5.41269 5.52701 5.61514 5.75280 5.79121 5.97707 6.03593 6.19801 6.27108 6.33848 6.43002 6.50438 6.79117 6.80922 7.09131 7.29682 7.42484 7.64236 7.87472 7.95104 8.07977 8.13246 8.31783 8.65229 8.84969 8.92227 9.02014 10.20880 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.002895 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.584656 B = 9669.621510 C =10993.813585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 H 0.090 0.910 4 C -0.118 4.118 5 C -0.609 4.609 6 S 2.421 3.579 7 C -0.658 4.658 8 O -0.940 6.940 9 O -0.942 6.942 10 N -0.743 5.743 11 C 0.515 3.485 12 O -0.519 6.519 13 C -0.072 4.072 14 C -0.181 4.181 15 C -0.082 4.082 16 C -0.240 4.240 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.795 5.795 24 Si 0.902 3.098 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.261 1.261 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.395 0.605 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.429 -3.880 -16.137 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.045 3.955 3 H 0.108 0.892 4 C -0.157 4.157 5 C -0.738 4.738 6 S 2.603 3.397 7 C -0.807 4.807 8 O -0.937 6.937 9 O -0.939 6.939 10 N -0.398 5.398 11 C 0.303 3.697 12 O -0.392 6.392 13 C -0.112 4.112 14 C -0.183 4.183 15 C -0.100 4.100 16 C -0.260 4.260 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.485 4.485 21 H 0.092 0.908 22 C -0.141 4.141 23 N -0.421 5.421 24 Si 0.726 3.274 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.185 1.185 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.229 0.771 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.661 -3.476 -16.508 18.138 hybrid contribution -0.121 -0.200 0.568 0.614 sum 6.541 -3.676 -15.940 17.618 Atomic orbital electron populations 1.22219 0.95070 1.02369 1.02954 1.20745 0.94131 0.97397 0.83208 0.89222 1.21668 0.90371 1.03254 1.00392 1.30346 1.07092 1.15249 1.21122 1.07829 0.78308 0.76094 0.77436 1.30274 1.26540 1.11992 1.11871 1.93606 1.83295 1.30081 1.86728 1.93601 1.78572 1.75697 1.46020 1.46278 1.69918 1.13789 1.09833 1.21246 0.76851 0.87704 0.83931 1.90682 1.47947 1.16250 1.84351 1.20277 1.00853 0.98941 0.91085 1.19043 0.94160 1.04234 1.00852 1.20277 0.95818 0.97072 0.96825 1.20294 0.97615 1.06502 1.01547 1.20674 0.94142 0.99414 0.98342 1.21300 0.96954 0.98612 1.01005 1.17333 0.91058 0.88966 0.89950 1.19459 1.00013 1.33077 0.95999 0.90787 1.25881 1.00500 0.93220 0.94454 1.69813 1.35608 1.36272 1.00396 0.86417 0.81982 0.79263 0.79722 1.19529 1.20103 1.18531 0.91922 0.92365 0.91155 0.89576 0.88827 0.84640 0.84683 0.85227 0.85374 0.85322 0.77133 0.88558 0.90744 0.89895 0.89737 0.89620 0.86548 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.48 37.16 0.35 -1.70 16 2 C 0.15 1.76 2.58 -67.93 -0.17 1.59 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.12 -0.97 4.76 -26.73 -0.13 -1.10 16 5 C -0.61 -3.74 5.69 37.16 0.21 -3.53 16 6 S 2.42 15.86 5.36 -107.50 -0.58 15.28 16 7 C -0.66 -2.41 10.62 101.05 1.07 -1.34 16 8 O -0.94 -9.68 18.10 -57.83 -1.05 -10.72 16 9 O -0.94 -9.73 18.10 -57.83 -1.05 -10.77 16 10 N -0.74 -9.64 4.53 -53.80 -0.24 -9.88 16 11 C 0.52 9.34 7.40 -10.98 -0.08 9.26 16 12 O -0.52 -11.79 15.70 5.55 0.09 -11.70 16 13 C -0.07 -1.34 5.18 -29.04 -0.15 -1.49 16 14 C -0.18 -4.25 4.43 -103.91 -0.46 -4.71 16 15 C -0.08 -1.84 9.66 -39.66 -0.38 -2.23 16 16 C -0.24 -5.53 10.05 -39.29 -0.39 -5.92 16 17 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 18 C -0.16 -4.24 8.69 -38.87 -0.34 -4.58 16 19 C 0.13 3.41 5.56 -106.82 -0.59 2.82 16 20 C -0.46 -11.85 8.14 -37.74 -0.31 -12.16 16 21 H 0.07 1.87 6.67 -52.49 -0.35 1.52 16 22 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 23 N -0.80 -20.43 10.96 55.55 0.61 -19.82 16 24 Si 0.90 18.75 29.59 -169.99 -5.03 13.72 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.14 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.13 0.68 7.75 -51.92 -0.40 0.28 16 35 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 37 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 38 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16 39 H 0.10 1.79 7.08 -51.93 -0.37 1.42 16 40 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 41 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.12 3.19 6.20 -52.49 -0.33 2.86 16 45 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -36.75 388.76 -10.07 -46.82 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.82 Total: 7.48 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.86 Total: -26.25 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.36 Total: -29.71 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -2.01 Total: -33.20 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: 15.86 SS G_CDS: -0.58 Total: 15.28 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.75 -10.07 -46.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776980273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.015 kcal (2) G-P(sol) polarization free energy of solvation -36.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds