Wall clock time and date at job start Wed Apr 1 2020 00:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47009 * 240.00301 * 2 1 3 5 5 C 1.52999 * 109.47377 * 174.99826 * 4 2 1 6 6 S 1.81402 * 109.47371 * 179.97438 * 5 4 2 7 7 C 1.81404 * 101.91919 * 180.02562 * 6 5 4 8 8 O 1.42098 * 108.57924 * 294.48882 * 6 5 4 9 9 O 1.42100 * 108.57392 * 65.51274 * 6 5 4 10 10 N 1.46500 * 109.47217 * 120.00314 * 2 1 3 11 11 C 1.34778 * 119.99859 * 275.00009 * 10 2 1 12 12 O 1.21285 * 120.00030 * 359.97438 * 11 10 2 13 13 C 1.50700 * 119.99673 * 179.97438 * 11 10 2 14 14 C 1.50694 * 109.46805 * 179.97438 * 13 11 10 15 15 C 1.37638 * 120.13181 * 264.99965 * 14 13 11 16 16 C 1.38610 * 120.25017 * 179.97438 * 15 14 13 17 17 C 1.38660 * 120.50181 * 0.02635 * 16 15 14 18 18 C 1.37592 * 120.24995 * 0.02562 * 17 16 15 19 19 C 1.40705 * 120.12600 * 84.72763 * 14 13 11 20 20 C 1.41390 * 120.24190 * 359.97438 * 19 14 13 21 21 H 1.07999 * 119.99997 * 333.89496 * 20 19 14 22 22 C 1.39949 * 119.99976 * 153.90073 * 20 19 14 23 23 N 1.30825 * 120.00203 * 343.70663 * 22 20 19 24 24 Si 1.86806 * 120.00143 * 163.70906 * 22 20 19 25 25 H 1.48502 * 109.46878 * 89.99476 * 24 22 20 26 26 H 1.48494 * 109.47112 * 209.99590 * 24 22 20 27 27 H 1.48500 * 109.47045 * 329.99783 * 24 22 20 28 28 H 1.09002 * 109.46953 * 59.99873 * 1 2 3 29 29 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46930 * 299.99949 * 1 2 3 31 31 H 1.08996 * 109.47070 * 295.00115 * 4 2 1 32 32 H 1.09000 * 109.47145 * 54.99951 * 4 2 1 33 33 H 1.09000 * 109.46769 * 300.00205 * 5 4 2 34 34 H 1.09000 * 109.46881 * 59.99963 * 5 4 2 35 35 H 1.08992 * 109.47182 * 60.00227 * 7 6 5 36 36 H 1.08999 * 109.46701 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.46622 * 299.99711 * 7 6 5 38 38 H 0.96995 * 119.99702 * 94.99653 * 10 2 1 39 39 H 1.08994 * 109.47103 * 300.00184 * 13 11 10 40 40 H 1.09004 * 109.47196 * 60.00346 * 13 11 10 41 41 H 1.08002 * 119.87667 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.75176 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.87437 * 180.02562 * 17 16 15 44 44 H 1.07998 * 120.13271 * 179.97438 * 18 17 16 45 45 H 0.96991 * 120.00531 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 16 4.1696 -1.4690 -2.7946 7 6 5.9616 -1.2175 -2.6672 8 8 3.8969 -2.8569 -2.6586 9 8 3.6953 -0.7779 -3.9421 10 7 2.0184 -0.6907 1.1961 11 6 2.1472 -0.0183 2.3571 12 8 1.8591 1.1585 2.4115 13 6 2.6490 -0.7290 3.5877 14 6 2.7004 0.2394 4.7411 15 6 3.8733 0.8935 5.0423 16 6 3.9232 1.7852 6.1023 17 6 2.7952 2.0285 6.8711 18 6 1.6121 1.3852 6.5889 19 6 1.5479 0.4828 5.5107 20 6 0.3358 -0.1785 5.2067 21 1 0.1452 -0.5211 4.2004 22 6 -0.6171 -0.3892 6.2098 23 7 -0.2785 -0.2741 7.4683 24 14 -2.3725 -0.8349 5.7520 25 1 -2.5014 -2.3117 5.6644 26 1 -3.3010 -0.3175 6.7889 27 1 -2.7102 -0.2298 4.4386 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7714 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0728 -0.4262 35 1 6.3253 -1.6591 -1.7395 36 1 6.4562 -1.6923 -3.5145 37 1 6.1797 -0.1495 -2.6713 38 1 2.2491 -1.6318 1.1525 39 1 1.9761 -1.5508 3.8324 40 1 3.6481 -1.1215 3.3985 41 1 4.7580 0.7120 4.4500 42 1 4.8480 2.2938 6.3318 43 1 2.8454 2.7257 7.6944 44 1 0.7348 1.5758 7.1891 45 1 -0.9387 -0.4205 8.1635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776980273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:24 Heat of formation + Delta-G solvation = -128.206896 kcal Electronic energy + Delta-G solvation = -27213.767151 eV Core-core repulsion = 23321.758017 eV Total energy + Delta-G solvation = -3892.009134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87436 -39.23707 -37.93480 -37.40254 -36.95567 -35.48605 -33.75749 -33.03964 -31.35452 -31.05035 -30.23067 -28.37060 -26.84822 -25.27713 -22.86033 -22.70602 -21.60789 -20.95286 -19.71913 -19.05742 -17.94475 -17.66677 -17.29776 -17.09967 -16.90125 -16.79176 -16.21708 -16.12255 -15.48300 -15.10685 -14.99537 -14.77476 -14.47875 -14.35146 -13.97897 -13.87695 -13.86406 -13.53082 -13.37099 -13.12225 -13.07172 -12.97406 -12.88342 -12.80729 -12.73142 -12.62522 -12.48679 -12.37756 -12.13648 -12.06086 -11.86237 -11.30392 -11.23768 -11.19285 -11.01337 -10.66827 -9.97702 -9.20531 -9.13695 -8.58722 -6.27866 -0.86528 1.01074 1.15503 1.35317 1.46199 1.53595 1.90251 1.93607 2.19553 2.42028 2.76642 2.80110 3.18892 3.61338 3.76470 3.81417 3.91128 4.15407 4.19799 4.27022 4.38651 4.40640 4.45535 4.51765 4.62456 4.65121 4.71589 4.73441 4.81575 4.84523 4.99824 5.03847 5.08204 5.14325 5.21765 5.30471 5.38712 5.56959 5.67954 5.79817 6.05717 6.19085 6.23573 6.43923 6.72032 6.79276 7.00960 7.13657 7.52839 8.37554 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.002895 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.584656 B = 9669.621510 C =10993.813585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.608 4.608 6 S 2.434 3.566 7 C -0.643 4.643 8 O -0.982 6.982 9 O -0.986 6.986 10 N -0.721 5.721 11 C 0.519 3.481 12 O -0.573 6.573 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.090 4.090 16 C -0.242 4.242 17 C -0.119 4.119 18 C -0.196 4.196 19 C 0.095 3.905 20 C -0.481 4.481 21 H 0.071 0.929 22 C 0.036 3.964 23 N -0.827 5.827 24 Si 0.968 3.032 25 H -0.255 1.255 26 H -0.270 1.270 27 H -0.268 1.268 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.413 0.587 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -4.893 -17.745 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.045 3.955 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.738 4.738 6 S 2.621 3.379 7 C -0.795 4.795 8 O -0.980 6.980 9 O -0.983 6.983 10 N -0.375 5.375 11 C 0.307 3.693 12 O -0.451 6.451 13 C -0.112 4.112 14 C -0.187 4.187 15 C -0.109 4.109 16 C -0.262 4.262 17 C -0.138 4.138 18 C -0.215 4.215 19 C 0.093 3.907 20 C -0.511 4.511 21 H 0.090 0.910 22 C -0.178 4.178 23 N -0.454 5.454 24 Si 0.790 3.210 25 H -0.179 1.179 26 H -0.194 1.194 27 H -0.192 1.192 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.250 0.750 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.503 -4.549 -18.151 20.554 hybrid contribution -0.536 0.163 1.051 1.191 sum 7.967 -4.386 -17.100 19.368 Atomic orbital electron populations 1.22218 0.95661 1.02796 1.01968 1.20830 0.93737 0.97117 0.83853 0.90714 1.21665 0.92072 1.03451 0.98660 1.30329 1.05557 1.16501 1.21382 1.07159 0.79599 0.74586 0.76520 1.30126 1.22135 1.13832 1.13434 1.93551 1.84854 1.32416 1.87138 1.93545 1.80467 1.76106 1.48184 1.46033 1.68134 1.14487 1.08871 1.21058 0.76368 0.86945 0.84932 1.90670 1.50573 1.18537 1.85288 1.20317 1.03344 0.97700 0.89873 1.19558 0.93500 1.04286 1.01321 1.20743 0.96837 0.96371 0.96901 1.20721 0.98143 1.06250 1.01038 1.20942 0.94023 0.99557 0.99231 1.21303 0.97344 1.00627 1.02249 1.17736 0.92564 0.89539 0.90854 1.19608 1.01071 1.34302 0.96152 0.91050 1.26647 1.04085 0.92927 0.94173 1.69878 1.36976 1.37247 1.01295 0.85410 0.77039 0.79617 0.78936 1.17948 1.19413 1.19222 0.89846 0.91213 0.95210 0.88571 0.87821 0.82987 0.83069 0.83127 0.84588 0.83276 0.75008 0.88750 0.86556 0.86196 0.86720 0.87920 0.88768 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 9.48 71.98 0.68 -3.34 16 2 C 0.15 3.30 2.58 44.99 0.12 3.41 16 3 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 4 C -0.12 -1.71 4.76 30.59 0.15 -1.56 16 5 C -0.61 -5.68 5.69 71.98 0.41 -5.27 16 6 S 2.43 26.83 5.36 -56.49 -0.30 26.53 16 7 C -0.64 -2.29 10.62 113.37 1.20 -1.09 16 8 O -0.98 -18.80 18.10 -127.37 -2.30 -21.10 16 9 O -0.99 -19.24 18.10 -127.37 -2.31 -21.55 16 10 N -0.72 -17.36 4.53 -442.51 -2.00 -19.36 16 11 C 0.52 18.32 7.40 87.66 0.65 18.96 16 12 O -0.57 -26.29 15.70 -3.04 -0.05 -26.34 16 13 C -0.07 -2.60 5.18 29.10 0.15 -2.45 16 14 C -0.18 -8.61 4.43 -19.41 -0.09 -8.69 16 15 C -0.09 -3.91 9.66 22.22 0.21 -3.70 16 16 C -0.24 -10.80 10.05 22.46 0.23 -10.58 16 17 C -0.12 -5.85 10.02 22.22 0.22 -5.62 16 18 C -0.20 -10.83 8.69 22.73 0.20 -10.63 16 19 C 0.10 5.17 5.56 -21.29 -0.12 5.06 16 20 C -0.48 -25.87 8.14 23.46 0.19 -25.68 16 21 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 22 C 0.04 1.84 5.16 85.26 0.44 2.28 16 23 N -0.83 -44.07 10.96 21.83 0.24 -43.83 16 24 Si 0.97 39.30 29.59 68.60 2.03 41.33 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 26 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.15 0.93 7.75 -2.39 -0.02 0.91 16 35 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.41 7.03 8.60 -92.71 -0.80 6.23 16 39 H 0.09 3.42 7.08 -2.39 -0.02 3.40 16 40 H 0.12 3.10 8.05 -2.38 -0.02 3.09 16 41 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 43 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.09 5.49 6.20 -2.91 -0.02 5.47 16 45 H 0.28 13.82 8.30 -92.72 -0.77 13.05 16 Total: -1.00 -83.98 388.76 0.15 -83.84 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.20 Total: 29.39 kcal Atomic # 6 Polarization: -53.55 SS G_CDS: 4.65 Total: -48.90 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -1.77 Total: -63.19 kcal Atomic # 8 Polarization: -64.33 SS G_CDS: -4.66 Total: -68.99 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Atomic # 16 Polarization: 26.83 SS G_CDS: -0.30 Total: 26.53 kcal Total: -83.98 0.15 -83.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776980273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.370 kcal (2) G-P(sol) polarization free energy of solvation -83.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds