Wall clock time and date at job start Wed Apr 1 2020 00:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47153 * 120.00219 * 2 1 3 5 5 C 1.53009 * 109.47126 * 184.99955 * 4 2 1 6 6 S 1.81396 * 109.46876 * 180.02562 * 5 4 2 7 7 C 1.81402 * 101.91901 * 180.02562 * 6 5 4 8 8 O 1.42095 * 108.58064 * 294.48564 * 6 5 4 9 9 O 1.42096 * 108.57826 * 65.51717 * 6 5 4 10 10 N 1.46508 * 109.47284 * 240.00532 * 2 1 3 11 11 C 1.34768 * 120.00195 * 84.99677 * 10 2 1 12 12 O 1.21283 * 120.00153 * 359.97438 * 11 10 2 13 13 C 1.50698 * 119.99965 * 180.02562 * 11 10 2 14 14 C 1.50701 * 109.47150 * 180.02562 * 13 11 10 15 15 C 1.37636 * 120.12941 * 264.99955 * 14 13 11 16 16 C 1.38611 * 120.25061 * 180.29574 * 15 14 13 17 17 C 1.38653 * 120.50140 * 359.44427 * 16 15 14 18 18 C 1.37598 * 120.24629 * 0.55396 * 17 16 15 19 19 C 1.40704 * 120.12792 * 85.01908 * 14 13 11 20 20 C 1.41387 * 120.24480 * 359.95991 * 19 14 13 21 21 H 1.08006 * 119.99793 * 334.08076 * 20 19 14 22 22 C 1.39940 * 120.00234 * 154.08580 * 20 19 14 23 23 N 1.30822 * 119.99912 * 343.61546 * 22 20 19 24 24 Si 1.86803 * 120.00192 * 163.62649 * 22 20 19 25 25 H 1.48494 * 109.47516 * 89.99468 * 24 22 20 26 26 H 1.48504 * 109.46852 * 209.99866 * 24 22 20 27 27 H 1.48504 * 109.47021 * 329.99095 * 24 22 20 28 28 H 1.08997 * 109.47498 * 299.99515 * 1 2 3 29 29 H 1.09004 * 109.47547 * 59.99572 * 1 2 3 30 30 H 1.09000 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47348 * 304.99860 * 4 2 1 32 32 H 1.09001 * 109.46993 * 65.00414 * 4 2 1 33 33 H 1.09002 * 109.46929 * 300.00161 * 5 4 2 34 34 H 1.09000 * 109.46577 * 59.99847 * 5 4 2 35 35 H 1.08997 * 109.47152 * 59.99715 * 7 6 5 36 36 H 1.09002 * 109.47184 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47056 * 299.99966 * 7 6 5 38 38 H 0.97001 * 119.99217 * 265.00046 * 10 2 1 39 39 H 1.08990 * 109.47195 * 60.00231 * 13 11 10 40 40 H 1.09001 * 109.47170 * 299.99896 * 13 11 10 41 41 H 1.08002 * 119.87271 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.75152 * 179.70481 * 16 15 14 43 43 H 1.08004 * 119.87985 * 180.29954 * 17 16 15 44 44 H 1.08002 * 120.12910 * 179.74432 * 18 17 16 45 45 H 0.97001 * 120.00439 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 16 4.1695 -1.4692 2.7943 7 6 5.9613 -1.2164 2.6677 8 8 3.6954 -0.7783 3.9419 9 8 3.8968 -2.8570 2.6581 10 7 2.0183 -0.6905 -1.1963 11 6 2.1470 -0.0182 -2.3572 12 8 1.8581 1.1585 -2.4117 13 6 2.6488 -0.7286 -3.5878 14 6 2.7002 0.2399 -4.7412 15 6 1.6451 0.3229 -5.6211 16 6 1.6923 1.2086 -6.6864 17 6 2.7952 2.0281 -6.8719 18 6 3.8614 1.9622 -6.0046 19 6 3.8271 1.0626 -4.9229 20 6 4.9167 0.9864 -4.0251 21 1 4.7585 0.6493 -3.0113 22 6 6.2001 1.3479 -4.4500 23 7 6.4628 1.4454 -5.7278 24 14 7.5382 1.6910 -3.1925 25 1 8.2641 0.4323 -2.8860 26 1 8.4897 2.6899 -3.7424 27 1 6.9247 2.2239 -1.9496 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -0.2618 2.1370 32 1 1.7516 -1.7716 1.2054 33 1 3.9994 -1.0728 0.4258 34 1 3.8531 0.4370 1.3573 35 1 6.1788 -0.1483 2.6722 36 1 6.4560 -1.6911 3.5150 37 1 6.3258 -1.6574 1.7399 38 1 2.2490 -1.6317 -1.1527 39 1 1.9760 -1.5503 -3.8326 40 1 3.6480 -1.1211 -3.3987 41 1 0.7790 -0.3075 -5.4836 42 1 0.8619 1.2636 -7.3747 43 1 2.8193 2.7179 -7.7026 44 1 4.7213 2.5985 -6.1533 45 1 7.3523 1.6963 -6.0224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776980274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:28 Heat of formation + Delta-G solvation = -102.362668 kcal Electronic energy + Delta-G solvation = -27458.843485 eV Core-core repulsion = 23567.955041 eV Total energy + Delta-G solvation = -3890.888444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.49908 -37.57419 -37.22961 -36.36060 -36.12178 -33.64524 -32.50620 -31.64800 -30.19075 -29.71878 -29.44953 -26.75053 -25.05383 -24.46760 -21.58841 -20.93525 -20.37038 -19.36219 -19.11795 -17.21996 -16.98870 -16.68394 -16.37202 -16.19403 -15.92945 -15.38827 -14.73230 -14.59661 -14.28200 -13.88514 -13.67688 -13.57011 -13.49361 -13.42814 -13.11156 -12.85354 -12.60794 -12.34520 -12.27250 -12.24779 -11.98983 -11.78328 -11.67026 -11.60211 -11.38128 -11.23454 -11.15332 -11.01386 -10.96324 -10.73633 -10.53740 -10.43650 -9.49847 -9.40180 -9.20280 -9.15632 -8.78163 -7.32189 -7.30360 -6.76417 -4.36693 -0.29861 2.44662 2.74671 2.94831 3.00692 3.03412 3.23247 3.31158 3.31978 3.60786 3.73749 3.87769 4.26897 4.41996 4.49032 4.62215 4.64060 4.71377 5.18633 5.24834 5.32227 5.36567 5.41727 5.48375 5.63994 5.70697 5.78468 5.95046 6.03473 6.18411 6.22368 6.28352 6.41802 6.50498 6.78197 6.80012 7.05594 7.28417 7.41122 7.62457 7.86753 7.94662 8.05355 8.12273 8.29732 8.62583 8.84619 8.89275 9.00145 10.17998 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010934 B = 0.003702 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.100887 B = 7560.837513 C = 9599.000347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.611 4.611 6 S 2.421 3.579 7 C -0.658 4.658 8 O -0.943 6.943 9 O -0.941 6.941 10 N -0.743 5.743 11 C 0.515 3.485 12 O -0.519 6.519 13 C -0.072 4.072 14 C -0.180 4.180 15 C -0.082 4.082 16 C -0.239 4.239 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.457 4.457 21 H 0.073 0.927 22 C 0.077 3.923 23 N -0.795 5.795 24 Si 0.900 3.100 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.262 1.262 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.395 0.605 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 -6.207 13.717 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.155 4.155 5 C -0.740 4.740 6 S 2.604 3.396 7 C -0.807 4.807 8 O -0.940 6.940 9 O -0.938 6.938 10 N -0.398 5.398 11 C 0.303 3.697 12 O -0.392 6.392 13 C -0.112 4.112 14 C -0.182 4.182 15 C -0.100 4.100 16 C -0.258 4.258 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.487 4.487 21 H 0.091 0.909 22 C -0.141 4.141 23 N -0.420 5.420 24 Si 0.724 3.276 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.186 1.186 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.229 0.771 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.209 -5.726 14.166 15.438 hybrid contribution 1.414 0.203 -0.186 1.440 sum -0.795 -5.523 13.980 15.053 Atomic orbital electron populations 1.22194 0.95239 1.02117 1.02763 1.20760 0.93887 0.97690 0.83324 0.89069 1.21650 0.90529 1.03074 1.00279 1.30364 1.06935 1.15505 1.21242 1.07795 0.78371 0.76060 0.77408 1.30274 1.26351 1.12152 1.11952 1.93593 1.78661 1.75697 1.46051 1.93597 1.83363 1.30110 1.86765 1.46271 1.69910 1.13788 1.09821 1.21236 0.76649 0.87694 0.84130 1.90682 1.47957 1.15996 1.84613 1.20282 1.02012 0.97543 0.91365 1.19050 0.98251 1.02452 0.98404 1.20303 0.96107 0.98174 0.95407 1.20313 0.99407 1.04365 1.01721 1.20679 0.94681 0.98684 0.98519 1.21288 0.97936 1.00983 0.97668 1.17323 0.90703 0.88012 0.91283 1.19426 0.91472 1.39530 0.98266 0.90881 1.25868 0.99949 0.92777 0.95468 1.69814 1.22418 1.34590 1.15224 0.86458 0.80282 0.79021 0.81826 1.19576 1.20037 1.18622 0.91847 0.91542 0.92468 0.88864 0.89656 0.84481 0.84484 0.85235 0.85370 0.85093 0.77125 0.90600 0.88640 0.89781 0.89672 0.89597 0.86584 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.15 0.35 -1.46 16 2 C 0.15 1.74 2.57 -67.93 -0.17 1.57 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 C -0.12 -1.01 4.76 -26.73 -0.13 -1.14 16 5 C -0.61 -4.64 5.69 37.16 0.21 -4.43 16 6 S 2.42 18.79 5.36 -107.50 -0.58 18.21 16 7 C -0.66 -3.60 10.62 101.05 1.07 -2.53 16 8 O -0.94 -10.60 18.10 -57.83 -1.05 -11.65 16 9 O -0.94 -10.50 18.10 -57.83 -1.05 -11.54 16 10 N -0.74 -9.63 4.53 -53.81 -0.24 -9.87 16 11 C 0.52 9.34 7.43 -10.99 -0.08 9.25 16 12 O -0.52 -11.78 15.70 5.55 0.09 -11.70 16 13 C -0.07 -1.35 5.18 -29.04 -0.15 -1.50 16 14 C -0.18 -4.22 4.43 -103.91 -0.46 -4.68 16 15 C -0.08 -1.86 9.66 -39.66 -0.38 -2.24 16 16 C -0.24 -5.52 10.05 -39.29 -0.39 -5.91 16 17 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 18 C -0.16 -4.21 8.68 -38.87 -0.34 -4.54 16 19 C 0.13 3.37 5.56 -106.83 -0.59 2.78 16 20 C -0.46 -11.59 8.14 -37.75 -0.31 -11.90 16 21 H 0.07 1.77 6.68 -52.48 -0.35 1.42 16 22 C 0.08 1.86 5.16 -17.34 -0.09 1.77 16 23 N -0.79 -20.07 10.97 55.55 0.61 -19.46 16 24 Si 0.90 17.94 29.59 -169.99 -5.03 12.91 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 27 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.14 0.95 7.75 -51.92 -0.40 0.54 16 34 H 0.14 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16 39 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 40 H 0.10 1.72 7.06 -51.93 -0.37 1.36 16 41 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 44 H 0.12 3.15 6.22 -52.49 -0.33 2.82 16 45 H 0.28 6.44 8.30 -40.82 -0.34 6.11 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -36.03 388.79 -10.06 -46.09 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.82 Total: 9.08 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -1.86 Total: -27.93 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 0.37 Total: -29.33 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -2.01 Total: -34.89 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 18.79 SS G_CDS: -0.58 Total: 18.21 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.03 -10.06 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776980274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.269 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds