Wall clock time and date at job start Wed Apr 1 2020 00:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47153 * 120.00219 * 2 1 3 5 5 C 1.53009 * 109.47126 * 184.99955 * 4 2 1 6 6 S 1.81396 * 109.46876 * 180.02562 * 5 4 2 7 7 C 1.81402 * 101.91901 * 180.02562 * 6 5 4 8 8 O 1.42095 * 108.58064 * 294.48564 * 6 5 4 9 9 O 1.42096 * 108.57826 * 65.51717 * 6 5 4 10 10 N 1.46508 * 109.47284 * 240.00532 * 2 1 3 11 11 C 1.34768 * 120.00195 * 84.99677 * 10 2 1 12 12 O 1.21283 * 120.00153 * 359.97438 * 11 10 2 13 13 C 1.50698 * 119.99965 * 180.02562 * 11 10 2 14 14 C 1.50701 * 109.47150 * 180.02562 * 13 11 10 15 15 C 1.37636 * 120.12941 * 264.99955 * 14 13 11 16 16 C 1.38611 * 120.25061 * 180.29574 * 15 14 13 17 17 C 1.38653 * 120.50140 * 359.44427 * 16 15 14 18 18 C 1.37598 * 120.24629 * 0.55396 * 17 16 15 19 19 C 1.40704 * 120.12792 * 85.01908 * 14 13 11 20 20 C 1.41387 * 120.24480 * 359.95991 * 19 14 13 21 21 H 1.08006 * 119.99793 * 334.08076 * 20 19 14 22 22 C 1.39940 * 120.00234 * 154.08580 * 20 19 14 23 23 N 1.30822 * 119.99912 * 343.61546 * 22 20 19 24 24 Si 1.86803 * 120.00192 * 163.62649 * 22 20 19 25 25 H 1.48494 * 109.47516 * 89.99468 * 24 22 20 26 26 H 1.48504 * 109.46852 * 209.99866 * 24 22 20 27 27 H 1.48504 * 109.47021 * 329.99095 * 24 22 20 28 28 H 1.08997 * 109.47498 * 299.99515 * 1 2 3 29 29 H 1.09004 * 109.47547 * 59.99572 * 1 2 3 30 30 H 1.09000 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47348 * 304.99860 * 4 2 1 32 32 H 1.09001 * 109.46993 * 65.00414 * 4 2 1 33 33 H 1.09002 * 109.46929 * 300.00161 * 5 4 2 34 34 H 1.09000 * 109.46577 * 59.99847 * 5 4 2 35 35 H 1.08997 * 109.47152 * 59.99715 * 7 6 5 36 36 H 1.09002 * 109.47184 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47056 * 299.99966 * 7 6 5 38 38 H 0.97001 * 119.99217 * 265.00046 * 10 2 1 39 39 H 1.08990 * 109.47195 * 60.00231 * 13 11 10 40 40 H 1.09001 * 109.47170 * 299.99896 * 13 11 10 41 41 H 1.08002 * 119.87271 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.75152 * 179.70481 * 16 15 14 43 43 H 1.08004 * 119.87985 * 180.29954 * 17 16 15 44 44 H 1.08002 * 120.12910 * 179.74432 * 18 17 16 45 45 H 0.97001 * 120.00439 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 16 4.1695 -1.4692 2.7943 7 6 5.9613 -1.2164 2.6677 8 8 3.6954 -0.7783 3.9419 9 8 3.8968 -2.8570 2.6581 10 7 2.0183 -0.6905 -1.1963 11 6 2.1470 -0.0182 -2.3572 12 8 1.8581 1.1585 -2.4117 13 6 2.6488 -0.7286 -3.5878 14 6 2.7002 0.2399 -4.7412 15 6 1.6451 0.3229 -5.6211 16 6 1.6923 1.2086 -6.6864 17 6 2.7952 2.0281 -6.8719 18 6 3.8614 1.9622 -6.0046 19 6 3.8271 1.0626 -4.9229 20 6 4.9167 0.9864 -4.0251 21 1 4.7585 0.6493 -3.0113 22 6 6.2001 1.3479 -4.4500 23 7 6.4628 1.4454 -5.7278 24 14 7.5382 1.6910 -3.1925 25 1 8.2641 0.4323 -2.8860 26 1 8.4897 2.6899 -3.7424 27 1 6.9247 2.2239 -1.9496 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -0.2618 2.1370 32 1 1.7516 -1.7716 1.2054 33 1 3.9994 -1.0728 0.4258 34 1 3.8531 0.4370 1.3573 35 1 6.1788 -0.1483 2.6722 36 1 6.4560 -1.6911 3.5150 37 1 6.3258 -1.6574 1.7399 38 1 2.2490 -1.6317 -1.1527 39 1 1.9760 -1.5503 -3.8326 40 1 3.6480 -1.1211 -3.3987 41 1 0.7790 -0.3075 -5.4836 42 1 0.8619 1.2636 -7.3747 43 1 2.8193 2.7179 -7.7026 44 1 4.7213 2.5985 -6.1533 45 1 7.3523 1.6963 -6.0224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776980274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:27 Heat of formation + Delta-G solvation = -127.756727 kcal Electronic energy + Delta-G solvation = -27459.944654 eV Core-core repulsion = 23567.955041 eV Total energy + Delta-G solvation = -3891.989613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87236 -39.23753 -37.96229 -37.40349 -36.98632 -35.47438 -33.76009 -33.04897 -31.34389 -31.05359 -30.25928 -28.37240 -26.83539 -25.28183 -22.87395 -22.69691 -21.59957 -20.95357 -19.75565 -19.04056 -17.95096 -17.69918 -17.27546 -17.13048 -16.92740 -16.75631 -16.27920 -16.10390 -15.48358 -15.10177 -15.00838 -14.78060 -14.43943 -14.35764 -14.00723 -13.92170 -13.84692 -13.56370 -13.35895 -13.10256 -13.09691 -13.00367 -12.87023 -12.80406 -12.71258 -12.62136 -12.47771 -12.38924 -12.11899 -12.07385 -11.88245 -11.30431 -11.26776 -11.18665 -10.99311 -10.66627 -9.97090 -9.20986 -9.13963 -8.56780 -6.26400 -0.89339 1.01897 1.15295 1.37061 1.49062 1.55754 1.88860 1.91144 2.21376 2.41703 2.72459 2.81717 3.15650 3.59982 3.76640 3.81373 3.88814 4.11775 4.19765 4.23851 4.38789 4.41943 4.43681 4.52432 4.61883 4.65165 4.72097 4.72432 4.83718 4.84224 4.98391 5.01425 5.07257 5.15509 5.22342 5.31726 5.38509 5.57032 5.68241 5.79983 6.06103 6.18919 6.23277 6.44001 6.72031 6.79319 7.01712 7.14134 7.52999 8.39870 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010934 B = 0.003702 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.100887 B = 7560.837513 C = 9599.000347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.067 0.933 4 C -0.119 4.119 5 C -0.614 4.614 6 S 2.440 3.560 7 C -0.649 4.649 8 O -0.982 6.982 9 O -0.978 6.978 10 N -0.720 5.720 11 C 0.519 3.481 12 O -0.573 6.573 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.093 4.093 16 C -0.246 4.246 17 C -0.119 4.119 18 C -0.195 4.195 19 C 0.097 3.903 20 C -0.480 4.480 21 H 0.078 0.922 22 C 0.033 3.967 23 N -0.829 5.829 24 Si 0.969 3.031 25 H -0.251 1.251 26 H -0.275 1.275 27 H -0.259 1.259 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.413 0.587 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 -7.703 15.358 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.157 4.157 5 C -0.744 4.744 6 S 2.626 3.374 7 C -0.801 4.801 8 O -0.979 6.979 9 O -0.975 6.975 10 N -0.375 5.375 11 C 0.307 3.693 12 O -0.451 6.451 13 C -0.112 4.112 14 C -0.187 4.187 15 C -0.111 4.111 16 C -0.265 4.265 17 C -0.137 4.137 18 C -0.215 4.215 19 C 0.094 3.906 20 C -0.510 4.510 21 H 0.096 0.904 22 C -0.181 4.181 23 N -0.455 5.455 24 Si 0.790 3.210 25 H -0.175 1.175 26 H -0.200 1.200 27 H -0.183 1.183 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.250 0.750 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.877 -7.288 15.837 17.535 hybrid contribution 1.245 0.652 -0.745 1.590 sum -0.633 -6.636 15.093 16.499 Atomic orbital electron populations 1.22165 0.94596 1.03084 1.02182 1.20859 0.94450 0.96816 0.83757 0.91456 1.21687 0.91373 1.03714 0.98934 1.30383 1.06327 1.16275 1.21412 1.07030 0.79286 0.74629 0.76421 1.30180 1.22857 1.13707 1.13385 1.93542 1.80297 1.76100 1.47955 1.93547 1.84694 1.32145 1.87111 1.46027 1.68159 1.14485 1.08827 1.21042 0.76164 0.86914 0.85173 1.90669 1.50699 1.18209 1.85534 1.20315 1.03319 0.97331 0.90267 1.19553 0.97317 1.02219 0.99627 1.20737 0.96942 0.98424 0.95034 1.20698 0.99642 1.03807 1.02318 1.20935 0.94672 0.99388 0.98734 1.21306 0.98406 1.02197 0.99583 1.17740 0.92279 0.88814 0.91718 1.19641 0.92118 1.40838 0.98398 0.90407 1.26738 1.02071 0.91952 0.97328 1.69896 1.23262 1.35216 1.17157 0.85396 0.77145 0.79466 0.78983 1.17522 1.19993 1.18281 0.90035 0.94563 0.90675 0.87638 0.88101 0.83545 0.83531 0.83586 0.84287 0.83487 0.74995 0.87224 0.88118 0.86762 0.86976 0.87953 0.88640 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.48 71.98 0.68 -2.64 16 2 C 0.15 3.21 2.57 44.99 0.12 3.32 16 3 H 0.07 1.83 7.58 -2.39 -0.02 1.82 16 4 C -0.12 -1.79 4.76 30.60 0.15 -1.64 16 5 C -0.61 -7.91 5.69 71.99 0.41 -7.50 16 6 S 2.44 33.24 5.36 -56.49 -0.30 32.94 16 7 C -0.65 -5.03 10.62 113.37 1.20 -3.83 16 8 O -0.98 -20.89 18.10 -127.37 -2.30 -23.19 16 9 O -0.98 -20.26 18.10 -127.37 -2.31 -22.57 16 10 N -0.72 -17.31 4.53 -442.55 -2.00 -19.32 16 11 C 0.52 18.33 7.43 87.66 0.65 18.98 16 12 O -0.57 -26.33 15.70 -3.04 -0.05 -26.38 16 13 C -0.07 -2.61 5.18 29.10 0.15 -2.46 16 14 C -0.19 -8.67 4.43 -19.40 -0.09 -8.76 16 15 C -0.09 -4.16 9.66 22.22 0.21 -3.95 16 16 C -0.25 -11.21 10.05 22.46 0.23 -10.98 16 17 C -0.12 -5.88 10.02 22.22 0.22 -5.65 16 18 C -0.20 -10.73 8.68 22.73 0.20 -10.53 16 19 C 0.10 5.17 5.56 -21.29 -0.12 5.06 16 20 C -0.48 -24.75 8.14 23.46 0.19 -24.55 16 21 H 0.08 3.78 6.68 -2.91 -0.02 3.76 16 22 C 0.03 1.63 5.16 85.26 0.44 2.07 16 23 N -0.83 -43.01 10.97 21.82 0.24 -42.77 16 24 Si 0.97 36.38 29.59 68.60 2.03 38.41 16 25 H -0.25 -8.59 7.11 99.48 0.71 -7.89 16 26 H -0.28 -10.20 7.11 99.48 0.71 -9.50 16 27 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 0.96 8.14 -2.38 -0.02 0.95 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.15 1.61 7.75 -2.39 -0.02 1.59 16 34 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.41 7.00 8.60 -92.71 -0.80 6.21 16 39 H 0.11 3.12 8.05 -2.39 -0.02 3.10 16 40 H 0.10 3.50 7.06 -2.39 -0.02 3.48 16 41 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 42 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.10 5.49 6.22 -2.91 -0.02 5.47 16 45 H 0.28 13.44 8.30 -92.71 -0.77 12.67 16 Total: -1.00 -80.99 388.79 0.15 -80.84 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.20 Total: 35.09 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 4.65 Total: -53.07 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -1.77 Total: -62.09 kcal Atomic # 8 Polarization: -67.48 SS G_CDS: -4.66 Total: -72.14 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 16 Polarization: 33.24 SS G_CDS: -0.30 Total: 32.94 kcal Total: -80.99 0.15 -80.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776980274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.914 kcal (2) G-P(sol) polarization free energy of solvation -80.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds