Wall clock time and date at job start Tue Mar 31 2020 22:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99978 * 2 1 4 4 C 1.53000 * 109.46998 * 269.99950 * 3 2 1 5 5 C 1.53006 * 109.47096 * 60.00506 * 4 3 2 6 6 C 1.53004 * 109.47060 * 179.97438 * 4 3 2 7 7 O 1.42898 * 109.47166 * 180.02562 * 6 4 3 8 8 C 1.52989 * 109.47431 * 300.00235 * 4 3 2 9 9 O 1.42905 * 109.47294 * 299.99885 * 8 4 3 10 10 C 1.34777 * 119.99561 * 180.02562 * 2 1 3 11 11 O 1.21615 * 119.99623 * 174.56832 * 10 2 1 12 12 C 1.47422 * 120.00514 * 354.57574 * 10 2 1 13 13 C 1.39680 * 120.21081 * 310.75979 * 12 10 2 14 14 C 1.37812 * 119.93618 * 179.97438 * 13 12 10 15 15 C 1.38662 * 120.38274 * 0.02562 * 14 13 12 16 16 C 1.37909 * 120.43676 * 359.97438 * 15 14 13 17 17 C 1.39112 * 120.04869 * 359.97438 * 16 15 14 18 18 S 1.76208 * 120.18473 * 179.97438 * 17 16 15 19 19 C 1.76191 * 100.00027 * 351.88922 * 18 17 16 20 20 H 1.08007 * 120.00199 * 4.75609 * 19 18 17 21 21 C 1.38810 * 119.99894 * 184.74837 * 19 18 17 22 22 N 1.31548 * 119.99837 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99824 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47314 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47004 * 120.00598 * 23 21 19 26 26 H 1.48505 * 109.47026 * 240.00450 * 23 21 19 27 27 H 1.09006 * 109.46618 * 272.94908 * 1 2 3 28 28 H 1.09001 * 109.47373 * 32.94711 * 1 2 3 29 29 H 1.09001 * 109.47175 * 152.95598 * 1 2 3 30 30 H 1.08997 * 109.46755 * 30.00069 * 3 2 1 31 31 H 1.08998 * 109.46815 * 150.00432 * 3 2 1 32 32 H 1.08999 * 109.46739 * 59.99383 * 5 4 3 33 33 H 1.08993 * 109.47073 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46957 * 299.99664 * 5 4 3 35 35 H 1.08994 * 109.47037 * 300.01059 * 6 4 3 36 36 H 1.09001 * 109.46419 * 60.00113 * 6 4 3 37 37 H 0.96703 * 114.00032 * 180.02562 * 7 6 4 38 38 H 1.09000 * 109.47532 * 59.99730 * 8 4 3 39 39 H 1.09003 * 109.47537 * 179.97438 * 8 4 3 40 40 H 0.96702 * 114.00133 * 180.02562 * 9 8 4 41 41 H 1.07999 * 120.03424 * 0.25846 * 13 12 10 42 42 H 1.08000 * 119.80489 * 179.97438 * 14 13 12 43 43 H 1.07997 * 119.77734 * 179.97438 * 15 14 13 44 44 H 1.07998 * 119.97408 * 179.97438 * 16 15 14 45 45 H 0.97005 * 119.99644 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 1.1155 1.8934 -2.1637 6 6 3.2169 3.0357 -1.4425 7 8 3.4546 3.4485 -2.7898 8 6 3.2792 0.6441 -2.1638 9 8 4.5280 0.4732 -1.4902 10 6 2.1388 -1.1673 -0.0005 11 8 3.3508 -1.1696 -0.1002 12 6 1.4066 -2.4412 0.1196 13 6 0.4515 -2.6108 1.1245 14 6 -0.2300 -3.8039 1.2313 15 6 0.0269 -4.8399 0.3462 16 6 0.9667 -4.6893 -0.6518 17 6 1.6644 -3.4923 -0.7768 18 16 2.8664 -3.2963 -2.0502 19 6 2.9333 -4.9463 -2.6644 20 1 2.2580 -5.6947 -2.2766 21 6 3.8538 -5.2843 -3.6469 22 7 4.6765 -4.3728 -4.1190 23 14 3.9243 -7.0336 -4.2986 24 1 2.9010 -7.8601 -3.6096 25 1 3.6549 -7.0289 -5.7590 26 1 5.2727 -7.6021 -4.0458 27 1 -0.3633 0.0529 1.0264 28 1 -0.3634 0.8624 -0.5589 29 1 -0.3633 -0.9153 -0.4673 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1383 0.5138 32 1 0.5266 2.6530 -1.6498 33 1 1.2972 2.2076 -3.1915 34 1 0.5705 0.9494 -2.1637 35 1 2.6276 3.7951 -0.9287 36 1 4.1693 2.9057 -0.9285 37 1 3.9366 4.2834 -2.8661 38 1 2.7343 -0.2999 -2.1638 39 1 3.4605 0.9586 -3.1916 40 1 5.1052 -0.1892 -1.8940 41 1 0.2439 -1.8062 1.8144 42 1 -0.9678 -3.9329 2.0094 43 1 -0.5126 -5.7709 0.4391 44 1 1.1611 -5.5013 -1.3368 45 1 5.3200 -4.6092 -4.8053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780992888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:36 Heat of formation + Delta-G solvation = -98.496424 kcal Electronic energy + Delta-G solvation = -28728.391102 eV Core-core repulsion = 24837.670311 eV Total energy + Delta-G solvation = -3890.720791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.11887 -38.35381 -37.22619 -35.68215 -35.20496 -33.05584 -32.77550 -30.54514 -30.33853 -27.80777 -26.09906 -25.89820 -25.71441 -25.11287 -22.55443 -22.00759 -19.70060 -18.60591 -17.91570 -17.35505 -16.87116 -16.49878 -16.08262 -15.94973 -15.47044 -15.16710 -14.95329 -14.48862 -14.28144 -13.88239 -13.53878 -13.23257 -13.15238 -12.95198 -12.85177 -12.82790 -12.32957 -12.16062 -11.98818 -11.94429 -11.81582 -11.63633 -11.23607 -11.19812 -11.04657 -10.97706 -10.78774 -10.33943 -10.17094 -9.86659 -9.81111 -9.59325 -9.33190 -9.08947 -8.77814 -8.48584 -8.29975 -8.23423 -6.55634 -6.50875 -4.20725 1.65302 1.99078 3.06838 3.10099 3.18380 3.23603 3.36254 3.46105 4.00515 4.30311 4.36123 4.77271 4.91630 4.93508 4.96057 5.08104 5.12089 5.29909 5.34220 5.40793 5.43573 5.46613 5.57467 5.61847 5.76870 5.81928 5.85387 5.88069 6.00237 6.09613 6.12695 6.19761 6.28106 6.35925 6.44100 6.52599 6.57451 6.82797 6.89006 7.01236 7.11494 7.42133 7.56584 7.65882 7.78419 8.13159 8.39172 8.79141 8.96529 10.54588 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.004785 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.622050 B = 5850.568615 C = 7837.745067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.616 5.616 3 C 0.135 3.865 4 C -0.074 4.074 5 C -0.140 4.140 6 C 0.093 3.907 7 O -0.568 6.568 8 C 0.100 3.900 9 O -0.557 6.557 10 C 0.558 3.442 11 O -0.485 6.485 12 C -0.159 4.159 13 C -0.068 4.068 14 C -0.179 4.179 15 C -0.082 4.082 16 C -0.153 4.153 17 C -0.049 4.049 18 S 0.102 5.898 19 C -0.567 4.567 20 H 0.093 0.907 21 C 0.081 3.919 22 N -0.859 5.859 23 Si 0.922 3.078 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.374 0.626 38 H 0.051 0.949 39 H 0.036 0.964 40 H 0.380 0.620 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 11.992 6.795 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.352 5.352 3 C 0.011 3.989 4 C -0.075 4.075 5 C -0.197 4.197 6 C 0.015 3.985 7 O -0.372 6.372 8 C 0.022 3.978 9 O -0.362 6.362 10 C 0.346 3.654 11 O -0.357 6.357 12 C -0.173 4.173 13 C -0.088 4.088 14 C -0.204 4.204 15 C -0.103 4.103 16 C -0.178 4.178 17 C -0.167 4.167 18 S 0.363 5.637 19 C -0.714 4.714 20 H 0.111 0.889 21 C -0.130 4.130 22 N -0.492 5.492 23 Si 0.748 3.252 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.220 0.780 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.227 0.773 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.155 0.845 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.428 12.892 6.217 16.125 hybrid contribution -0.350 -2.095 -0.205 2.134 sum -7.778 10.797 6.012 14.602 Atomic orbital electron populations 1.21959 0.80186 1.03432 1.01186 1.47666 1.06415 1.05454 1.75629 1.21218 0.98023 0.84738 0.94888 1.21014 0.95451 0.94223 0.96827 1.21844 0.95384 1.01537 1.00925 1.22016 0.98866 0.94398 0.83253 1.86484 1.79697 1.44064 1.26957 1.21841 0.85800 0.96731 0.93455 1.86258 1.28815 1.63417 1.57727 1.18361 0.87508 0.83152 0.76381 1.90897 1.12804 1.86286 1.45714 1.19237 1.02751 0.94651 1.00683 1.20934 0.94092 0.97255 0.96505 1.20670 1.03447 0.94424 1.01828 1.21070 0.96760 0.97927 0.94526 1.21412 0.97893 0.98052 1.00462 1.22872 0.99908 0.94683 0.99282 1.83776 1.39427 1.14073 1.26439 1.23597 1.24373 0.96637 1.26812 0.88896 1.25087 0.93761 0.99040 0.95105 1.69966 1.18837 1.33808 1.26619 0.86042 0.78589 0.81895 0.78698 1.19154 1.20268 1.20187 0.93202 0.91308 0.90440 0.91323 0.88994 0.92775 0.91836 0.91942 0.94400 0.92595 0.77989 0.93093 0.94538 0.77295 0.86807 0.87043 0.87029 0.84453 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 8.11 59.85 0.49 1.36 16 2 N -0.62 -9.17 2.40 -182.85 -0.44 -9.61 16 3 C 0.13 1.82 4.48 -4.04 -0.02 1.81 16 4 C -0.07 -1.03 0.51 -154.51 -0.08 -1.10 16 5 C -0.14 -1.75 7.08 37.16 0.26 -1.49 16 6 C 0.09 1.12 5.77 37.16 0.21 1.33 16 7 O -0.57 -6.94 12.31 -35.23 -0.43 -7.38 16 8 C 0.10 1.77 4.91 37.15 0.18 1.96 16 9 O -0.56 -10.38 10.16 -57.81 -0.59 -10.96 16 10 C 0.56 10.63 5.24 -12.52 -0.07 10.56 16 11 O -0.48 -10.73 11.82 -17.32 -0.20 -10.94 16 12 C -0.16 -3.10 4.67 -104.76 -0.49 -3.59 16 13 C -0.07 -1.08 7.98 -39.20 -0.31 -1.40 16 14 C -0.18 -2.73 10.02 -39.58 -0.40 -3.13 16 15 C -0.08 -1.37 10.03 -39.55 -0.40 -1.77 16 16 C -0.15 -3.13 9.24 -39.38 -0.36 -3.50 16 17 C -0.05 -1.09 6.13 -38.39 -0.24 -1.33 16 18 S 0.10 2.62 19.72 -107.50 -2.12 0.50 16 19 C -0.57 -15.33 9.08 30.94 0.28 -15.04 16 20 H 0.09 2.40 4.86 -52.48 -0.25 2.14 16 21 C 0.08 2.17 5.49 -17.46 -0.10 2.08 16 22 N -0.86 -24.16 13.22 55.49 0.73 -23.42 16 23 Si 0.92 20.48 29.55 -169.99 -5.02 15.46 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.05 0.48 7.44 -51.93 -0.39 0.09 16 28 H 0.07 0.66 5.92 -51.93 -0.31 0.36 16 29 H 0.08 1.00 6.38 -51.93 -0.33 0.67 16 30 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.09 1.45 7.04 -51.93 -0.37 1.08 16 32 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 34 H 0.06 0.82 5.94 -51.93 -0.31 0.51 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 37 H 0.37 2.80 9.12 45.56 0.42 3.21 16 38 H 0.05 1.04 6.06 -51.93 -0.31 0.72 16 39 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 40 H 0.38 7.00 9.12 45.56 0.42 7.42 16 41 H 0.11 1.51 6.92 -52.49 -0.36 1.15 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.14 2.95 4.99 -52.49 -0.26 2.69 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -32.33 364.81 -8.11 -40.44 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -4.50 Total: 13.66 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.03 Total: -13.25 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.29 Total: -33.03 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.23 Total: -29.28 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.12 Total: 0.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.33 -8.11 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780992888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.059 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds