Wall clock time and date at job start Tue Mar 31 2020 22:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99978 * 2 1 4 4 C 1.53000 * 109.46998 * 269.99950 * 3 2 1 5 5 C 1.53006 * 109.47096 * 60.00506 * 4 3 2 6 6 C 1.53004 * 109.47060 * 179.97438 * 4 3 2 7 7 O 1.42898 * 109.47166 * 180.02562 * 6 4 3 8 8 C 1.52989 * 109.47431 * 300.00235 * 4 3 2 9 9 O 1.42905 * 109.47294 * 299.99885 * 8 4 3 10 10 C 1.34777 * 119.99561 * 180.02562 * 2 1 3 11 11 O 1.21615 * 119.99623 * 174.56832 * 10 2 1 12 12 C 1.47422 * 120.00514 * 354.57574 * 10 2 1 13 13 C 1.39680 * 120.21081 * 310.75979 * 12 10 2 14 14 C 1.37812 * 119.93618 * 179.97438 * 13 12 10 15 15 C 1.38662 * 120.38274 * 0.02562 * 14 13 12 16 16 C 1.37909 * 120.43676 * 359.97438 * 15 14 13 17 17 C 1.39112 * 120.04869 * 359.97438 * 16 15 14 18 18 S 1.76208 * 120.18473 * 179.97438 * 17 16 15 19 19 C 1.76191 * 100.00027 * 351.88922 * 18 17 16 20 20 H 1.08007 * 120.00199 * 4.75609 * 19 18 17 21 21 C 1.38810 * 119.99894 * 184.74837 * 19 18 17 22 22 N 1.31548 * 119.99837 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99824 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47314 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47004 * 120.00598 * 23 21 19 26 26 H 1.48505 * 109.47026 * 240.00450 * 23 21 19 27 27 H 1.09006 * 109.46618 * 272.94908 * 1 2 3 28 28 H 1.09001 * 109.47373 * 32.94711 * 1 2 3 29 29 H 1.09001 * 109.47175 * 152.95598 * 1 2 3 30 30 H 1.08997 * 109.46755 * 30.00069 * 3 2 1 31 31 H 1.08998 * 109.46815 * 150.00432 * 3 2 1 32 32 H 1.08999 * 109.46739 * 59.99383 * 5 4 3 33 33 H 1.08993 * 109.47073 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46957 * 299.99664 * 5 4 3 35 35 H 1.08994 * 109.47037 * 300.01059 * 6 4 3 36 36 H 1.09001 * 109.46419 * 60.00113 * 6 4 3 37 37 H 0.96703 * 114.00032 * 180.02562 * 7 6 4 38 38 H 1.09000 * 109.47532 * 59.99730 * 8 4 3 39 39 H 1.09003 * 109.47537 * 179.97438 * 8 4 3 40 40 H 0.96702 * 114.00133 * 180.02562 * 9 8 4 41 41 H 1.07999 * 120.03424 * 0.25846 * 13 12 10 42 42 H 1.08000 * 119.80489 * 179.97438 * 14 13 12 43 43 H 1.07997 * 119.77734 * 179.97438 * 15 14 13 44 44 H 1.07998 * 119.97408 * 179.97438 * 16 15 14 45 45 H 0.97005 * 119.99644 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 1.1155 1.8934 -2.1637 6 6 3.2169 3.0357 -1.4425 7 8 3.4546 3.4485 -2.7898 8 6 3.2792 0.6441 -2.1638 9 8 4.5280 0.4732 -1.4902 10 6 2.1388 -1.1673 -0.0005 11 8 3.3508 -1.1696 -0.1002 12 6 1.4066 -2.4412 0.1196 13 6 0.4515 -2.6108 1.1245 14 6 -0.2300 -3.8039 1.2313 15 6 0.0269 -4.8399 0.3462 16 6 0.9667 -4.6893 -0.6518 17 6 1.6644 -3.4923 -0.7768 18 16 2.8664 -3.2963 -2.0502 19 6 2.9333 -4.9463 -2.6644 20 1 2.2580 -5.6947 -2.2766 21 6 3.8538 -5.2843 -3.6469 22 7 4.6765 -4.3728 -4.1190 23 14 3.9243 -7.0336 -4.2986 24 1 2.9010 -7.8601 -3.6096 25 1 3.6549 -7.0289 -5.7590 26 1 5.2727 -7.6021 -4.0458 27 1 -0.3633 0.0529 1.0264 28 1 -0.3634 0.8624 -0.5589 29 1 -0.3633 -0.9153 -0.4673 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1383 0.5138 32 1 0.5266 2.6530 -1.6498 33 1 1.2972 2.2076 -3.1915 34 1 0.5705 0.9494 -2.1637 35 1 2.6276 3.7951 -0.9287 36 1 4.1693 2.9057 -0.9285 37 1 3.9366 4.2834 -2.8661 38 1 2.7343 -0.2999 -2.1638 39 1 3.4605 0.9586 -3.1916 40 1 5.1052 -0.1892 -1.8940 41 1 0.2439 -1.8062 1.8144 42 1 -0.9678 -3.9329 2.0094 43 1 -0.5126 -5.7709 0.4391 44 1 1.1611 -5.5013 -1.3368 45 1 5.3200 -4.6092 -4.8053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780992888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:35 Heat of formation + Delta-G solvation = -122.615936 kcal Electronic energy + Delta-G solvation = -28729.437003 eV Core-core repulsion = 24837.670311 eV Total energy + Delta-G solvation = -3891.766692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42743 -39.65096 -38.55003 -36.86771 -36.56635 -34.78769 -34.25120 -31.96944 -31.78976 -28.83375 -27.88184 -27.15686 -26.96763 -26.36155 -23.91617 -23.45224 -21.11757 -19.91483 -19.51744 -18.45909 -18.19096 -17.95681 -17.55986 -17.20482 -17.08265 -16.67687 -16.18392 -15.83341 -15.70358 -15.11586 -15.02683 -14.62436 -14.48907 -14.38844 -14.13436 -14.04020 -13.57107 -13.46432 -13.35194 -13.05731 -13.02887 -12.97628 -12.95262 -12.83370 -12.57172 -12.19311 -12.03819 -11.86611 -11.47195 -11.40810 -11.35243 -10.92572 -10.80149 -10.58770 -10.46957 -10.18559 -9.72830 -9.45385 -8.50073 -8.43440 -6.24568 0.20927 0.54189 1.25416 1.34031 1.44182 1.62525 1.89742 2.15411 2.23440 2.84005 2.98508 3.17733 3.27298 3.66597 3.75334 3.85880 3.89985 4.07161 4.25911 4.29905 4.38878 4.42043 4.48497 4.61962 4.64597 4.65992 4.73304 4.74102 4.84356 4.88332 4.90206 4.96413 5.03953 5.10401 5.12607 5.15804 5.37712 5.45184 5.50599 5.56030 5.68779 5.75963 6.08976 6.16992 6.51195 6.83147 6.93626 6.97099 7.41939 8.58153 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.004785 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.622050 B = 5850.568615 C = 7837.745067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.607 5.607 3 C 0.136 3.864 4 C -0.073 4.073 5 C -0.133 4.133 6 C 0.097 3.903 7 O -0.588 6.588 8 C 0.103 3.897 9 O -0.560 6.560 10 C 0.549 3.451 11 O -0.529 6.529 12 C -0.163 4.163 13 C -0.062 4.062 14 C -0.150 4.150 15 C -0.078 4.078 16 C -0.173 4.173 17 C -0.072 4.072 18 S 0.012 5.988 19 C -0.578 4.578 20 H 0.096 0.904 21 C 0.024 3.976 22 N -0.902 5.902 23 Si 0.993 3.007 24 H -0.257 1.257 25 H -0.269 1.269 26 H -0.272 1.272 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.394 0.606 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.373 0.627 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.147 0.853 44 H 0.117 0.883 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 12.963 9.793 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.341 5.341 3 C 0.013 3.987 4 C -0.075 4.075 5 C -0.190 4.190 6 C 0.019 3.981 7 O -0.396 6.396 8 C 0.025 3.975 9 O -0.364 6.364 10 C 0.337 3.663 11 O -0.405 6.405 12 C -0.175 4.175 13 C -0.082 4.082 14 C -0.173 4.173 15 C -0.099 4.099 16 C -0.198 4.198 17 C -0.189 4.189 18 S 0.268 5.732 19 C -0.725 4.725 20 H 0.113 0.887 21 C -0.182 4.182 22 N -0.537 5.537 23 Si 0.815 3.185 24 H -0.181 1.181 25 H -0.194 1.194 26 H -0.197 1.197 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.244 0.756 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.219 0.781 41 H 0.171 0.829 42 H 0.181 0.819 43 H 0.165 0.835 44 H 0.135 0.865 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.271 13.907 9.282 20.164 hybrid contribution 0.605 -2.292 -0.918 2.542 sum -10.666 11.615 8.364 17.850 Atomic orbital electron populations 1.22226 0.77698 1.03828 1.03567 1.47671 1.07922 1.04644 1.73841 1.21336 0.97772 0.85013 0.94557 1.21070 0.95720 0.93866 0.96795 1.21808 0.94674 1.02035 1.00461 1.21970 0.98533 0.94197 0.83378 1.86443 1.80221 1.45722 1.27240 1.21867 0.85520 0.96824 0.93291 1.86253 1.29261 1.62966 1.57945 1.18494 0.87129 0.84322 0.76312 1.90878 1.14752 1.86989 1.47852 1.19569 1.03090 0.94191 1.00646 1.21392 0.92424 0.98919 0.95424 1.21296 1.02301 0.92673 1.01031 1.21471 0.95302 1.00038 0.93064 1.21421 0.99486 0.97032 1.01843 1.22786 0.99895 0.96697 0.99497 1.83877 1.43929 1.14734 1.30632 1.23873 1.24547 0.97070 1.27038 0.88688 1.26100 0.93315 1.03399 0.95351 1.70110 1.19960 1.35979 1.27641 0.84980 0.78766 0.76557 0.78220 1.18104 1.19444 1.19737 0.89781 0.88855 0.92083 0.86493 0.91592 0.89025 0.93241 0.93042 0.90494 0.94046 0.75648 0.96184 0.96526 0.78084 0.82898 0.81920 0.83540 0.86547 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 8.11 127.77 1.04 2.36 16 2 N -0.61 -17.07 2.40 -850.66 -2.04 -19.11 16 3 C 0.14 3.41 4.48 86.38 0.39 3.80 16 4 C -0.07 -1.98 0.51 -52.18 -0.03 -2.01 16 5 C -0.13 -3.08 7.08 71.98 0.51 -2.57 16 6 C 0.10 2.18 5.77 71.98 0.42 2.60 16 7 O -0.59 -13.93 12.31 -148.98 -1.83 -15.77 16 8 C 0.10 3.94 4.91 71.98 0.35 4.29 16 9 O -0.56 -22.81 10.16 -127.39 -1.29 -24.10 16 10 C 0.55 21.21 5.24 86.66 0.45 21.67 16 11 O -0.53 -24.84 11.82 17.51 0.21 -24.64 16 12 C -0.16 -6.25 4.67 -19.95 -0.09 -6.34 16 13 C -0.06 -1.73 7.98 22.52 0.18 -1.55 16 14 C -0.15 -3.76 10.02 22.27 0.22 -3.54 16 15 C -0.08 -2.38 10.03 22.29 0.22 -2.16 16 16 C -0.17 -7.16 9.24 22.40 0.21 -6.95 16 17 C -0.07 -3.32 6.13 23.04 0.14 -3.18 16 18 S 0.01 0.69 19.72 -56.49 -1.11 -0.43 16 19 C -0.58 -33.38 9.08 67.96 0.62 -32.76 16 20 H 0.10 5.22 4.86 -2.91 -0.01 5.21 16 21 C 0.02 1.38 5.49 84.87 0.47 1.84 16 22 N -0.90 -54.29 13.22 21.65 0.29 -54.01 16 23 Si 0.99 43.82 29.55 68.60 2.03 45.84 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H 0.08 1.11 7.44 -2.38 -0.02 1.09 16 28 H 0.09 1.38 5.92 -2.39 -0.01 1.37 16 29 H 0.06 1.41 6.38 -2.39 -0.02 1.40 16 30 H 0.12 1.85 8.07 -2.39 -0.02 1.83 16 31 H 0.07 2.05 7.04 -2.39 -0.02 2.03 16 32 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 33 H 0.05 1.29 7.68 -2.39 -0.02 1.27 16 34 H 0.05 1.29 5.94 -2.39 -0.01 1.28 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.04 1.04 7.68 -2.39 -0.02 1.03 16 37 H 0.39 5.41 9.12 -74.06 -0.68 4.74 16 38 H 0.02 0.89 6.06 -2.39 -0.01 0.88 16 39 H 0.02 0.67 7.68 -2.39 -0.02 0.66 16 40 H 0.37 15.70 9.12 -74.06 -0.68 15.03 16 41 H 0.15 3.12 6.92 -2.91 -0.02 3.10 16 42 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.12 5.24 4.99 -2.91 -0.01 5.23 16 45 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -80.24 364.81 1.03 -79.21 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.30 Total: 37.50 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 5.09 Total: -24.50 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -1.75 Total: -73.11 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -2.92 Total: -64.51 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -1.11 Total: -0.43 kcal Total: -80.24 1.03 -79.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780992888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.408 kcal (2) G-P(sol) polarization free energy of solvation -80.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds