Wall clock time and date at job start Tue Mar 31 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.20823 * 119.99766 * 245.00228 * 13 3 2 15 15 O 1.34224 * 119.99773 * 64.99417 * 13 3 2 16 16 C 1.45202 * 116.99713 * 180.02562 * 15 13 3 17 17 C 1.50706 * 109.47000 * 180.02562 * 16 15 13 18 18 O 1.21282 * 119.99805 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99913 * 180.02562 * 17 16 15 20 20 C 1.46498 * 119.99936 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47186 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99517 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00097 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00022 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00010 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47429 * 59.99587 * 25 23 21 27 27 H 1.48503 * 109.47322 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46883 * 299.99374 * 25 23 21 29 29 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 31 31 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 32 32 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 33 33 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 34 34 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 35 35 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 36 36 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 37 37 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47164 * 300.00055 * 16 15 13 39 39 H 1.08993 * 109.47331 * 60.00820 * 16 15 13 40 40 H 0.96995 * 120.00103 * 359.97438 * 19 17 16 41 41 H 1.09000 * 109.46663 * 299.99352 * 20 19 17 42 42 H 1.09001 * 109.47524 * 59.99546 * 20 19 17 43 43 H 0.97006 * 119.99675 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2225 1.8594 0.7841 15 8 4.1237 0.9845 -1.2427 16 6 5.5745 1.0158 -1.2921 17 6 6.0441 0.4653 -2.6141 18 8 5.2357 0.0838 -3.4337 19 7 7.3626 0.3961 -2.8852 20 6 7.8191 -0.1384 -4.1705 21 6 9.3248 -0.1060 -4.2217 22 1 9.8856 0.2750 -3.3810 23 6 9.9865 -0.5629 -5.3417 24 7 9.3036 -1.0274 -6.3652 25 14 11.8529 -0.5221 -5.4054 26 1 12.4042 -1.3480 -4.3013 27 1 12.3158 -1.0652 -6.7078 28 1 12.3228 0.8789 -5.2578 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 0.0795 2.3915 -0.8426 35 1 -1.9066 3.8440 -0.9052 36 1 -2.5287 5.1688 1.0731 37 1 -1.1726 5.0383 3.1229 38 1 5.9197 2.0440 -1.1838 39 1 5.9788 0.4095 -0.4816 40 1 8.0091 0.7009 -2.2295 41 1 7.4735 -1.1664 -4.2797 42 1 7.4152 0.4688 -4.9806 43 1 9.7691 -1.3491 -7.1530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786540598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:14 Heat of formation + Delta-G solvation = -174.507838 kcal Electronic energy + Delta-G solvation = -28413.786293 eV Core-core repulsion = 23953.556223 eV Total energy + Delta-G solvation = -4460.230070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.07230 -41.31923 -40.23250 -38.80947 -37.98334 -36.41672 -34.31766 -34.21892 -32.45239 -31.19250 -30.50217 -29.58953 -28.02649 -26.53969 -23.93554 -23.00781 -22.91092 -22.32266 -20.86934 -20.01339 -19.25760 -18.11938 -17.62606 -17.29876 -16.99152 -16.82021 -16.44803 -16.14981 -15.63984 -15.53289 -15.27263 -15.13827 -15.02220 -14.57515 -14.38061 -14.21324 -13.64044 -13.28859 -13.26607 -13.13513 -12.86320 -12.63031 -12.47656 -12.24623 -12.15303 -12.02275 -11.85341 -11.83094 -11.46328 -11.06424 -11.05084 -10.94095 -10.80770 -10.54931 -10.37484 -9.49136 -9.39132 -9.25686 -8.81366 -8.65722 -8.04243 -6.22487 -4.30184 0.65749 0.76219 1.73976 1.88157 2.88077 3.10142 3.11101 3.22504 3.27541 3.28867 3.78756 3.81269 4.13849 4.22770 4.25693 4.30618 4.38393 4.50272 4.70882 4.76484 4.82073 4.92230 5.03040 5.08000 5.13040 5.15584 5.24835 5.26879 5.44625 5.57074 5.60556 5.62163 5.70530 5.83785 5.91756 6.12312 6.14688 6.75309 7.17372 7.24435 7.41346 7.47106 7.57969 7.88400 8.44250 8.66264 8.90346 9.36275 10.87504 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025605 B = 0.001838 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.283255 B =15231.639095 C =15577.141734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.095 3.905 4 H 0.119 0.881 5 O -0.277 6.277 6 C 0.098 3.902 7 C -0.185 4.185 8 C -0.087 4.087 9 C -0.128 4.128 10 C -0.117 4.117 11 C 0.073 3.927 12 F -0.130 7.130 13 C 0.459 3.541 14 O -0.484 6.484 15 O -0.323 6.323 16 C 0.049 3.951 17 C 0.501 3.499 18 O -0.534 6.534 19 N -0.705 5.705 20 C 0.252 3.748 21 C -0.547 4.547 22 H 0.064 0.936 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.393 0.607 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.225 8.781 15.649 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.037 3.963 4 H 0.137 0.863 5 O -0.190 6.190 6 C 0.052 3.948 7 C -0.204 4.204 8 C -0.106 4.106 9 C -0.146 4.146 10 C -0.136 4.136 11 C 0.053 3.947 12 F -0.108 7.108 13 C 0.299 3.701 14 O -0.370 6.370 15 O -0.238 6.238 16 C -0.029 4.029 17 C 0.283 3.717 18 O -0.412 6.412 19 N -0.355 5.355 20 C 0.132 3.868 21 C -0.585 4.585 22 H 0.082 0.918 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.226 0.774 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.361 8.473 15.301 29.183 hybrid contribution 1.665 0.189 0.338 1.710 sum -21.695 8.662 15.639 28.112 Atomic orbital electron populations 1.21933 0.93980 1.03128 1.02265 1.22023 0.97698 0.92532 1.05379 1.21897 0.88948 0.97020 0.88423 0.86341 1.86237 1.42417 1.58168 1.32209 1.19046 0.88750 0.92648 0.94379 1.21368 0.97634 1.03796 0.97579 1.21048 0.95796 0.94854 0.98856 1.20983 1.00504 1.00682 0.92425 1.21067 0.93607 0.98637 1.00289 1.17013 0.94120 1.00972 0.82550 1.91532 1.75497 1.95226 1.48560 1.23204 0.91125 0.75119 0.80651 1.90721 1.64880 1.41901 1.39500 1.86510 1.23059 1.75542 1.38693 1.22953 0.77119 1.03838 0.98957 1.19830 0.84031 0.80461 0.87342 1.90709 1.53580 1.48393 1.48478 1.46372 1.04755 1.62908 1.21504 1.19184 0.94406 0.94719 0.78540 1.21168 0.90569 1.44272 1.02506 0.91792 1.24950 0.99214 0.94634 0.95165 1.69963 1.36054 1.40527 1.05616 0.86439 0.84282 0.78522 0.77466 1.20024 1.21027 1.20019 0.91278 0.92162 0.91950 0.89794 0.87959 0.83726 0.84719 0.84689 0.83933 0.88289 0.88219 0.77360 0.95198 0.95222 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 8.49 37.16 0.32 -0.75 16 2 C -0.14 -1.22 5.62 -26.73 -0.15 -1.37 16 3 C 0.09 1.01 2.64 -27.88 -0.07 0.93 16 4 H 0.12 0.99 5.42 -51.93 -0.28 0.71 16 5 O -0.28 -3.38 8.98 -39.51 -0.35 -3.73 16 6 C 0.10 1.00 5.66 -39.18 -0.22 0.78 16 7 C -0.19 -1.39 7.38 -39.45 -0.29 -1.68 16 8 C -0.09 -0.51 10.04 -39.59 -0.40 -0.91 16 9 C -0.13 -0.72 10.04 -39.56 -0.40 -1.12 16 10 C -0.12 -0.84 10.02 -39.54 -0.40 -1.24 16 11 C 0.07 0.75 7.31 -39.30 -0.29 0.47 16 12 F -0.13 -1.61 17.11 2.25 0.04 -1.57 16 13 C 0.46 6.34 7.29 36.01 0.26 6.60 16 14 O -0.48 -7.95 16.26 -25.46 -0.41 -8.37 16 15 O -0.32 -4.84 9.72 -45.89 -0.45 -5.29 16 16 C 0.05 0.72 5.94 36.01 0.21 0.93 16 17 C 0.50 9.71 7.91 -10.98 -0.09 9.62 16 18 O -0.53 -12.57 16.50 -14.10 -0.23 -12.80 16 19 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 20 C 0.25 6.46 5.43 -5.19 -0.03 6.44 16 21 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 22 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 24 N -0.88 -25.54 13.29 55.43 0.74 -24.80 16 25 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 31 H 0.06 0.35 6.74 -51.93 -0.35 0.00 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.15 0.87 4.28 -52.49 -0.22 0.64 16 35 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 36 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 39 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 40 H 0.39 6.68 8.32 -40.82 -0.34 6.34 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -34.61 375.12 -7.63 -42.25 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.30 Total: 2.19 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.96 Total: 5.57 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.40 Total: -39.39 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.45 Total: -30.18 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.61 -7.63 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786540598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.262 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds