Wall clock time and date at job start Tue Mar 31 2020 22:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.20823 * 119.99766 * 245.00228 * 13 3 2 15 15 O 1.34224 * 119.99773 * 64.99417 * 13 3 2 16 16 C 1.45202 * 116.99713 * 180.02562 * 15 13 3 17 17 C 1.50706 * 109.47000 * 180.02562 * 16 15 13 18 18 O 1.21282 * 119.99805 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99913 * 180.02562 * 17 16 15 20 20 C 1.46498 * 119.99936 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47186 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99517 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00097 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00022 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00010 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47429 * 59.99587 * 25 23 21 27 27 H 1.48503 * 109.47322 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46883 * 299.99374 * 25 23 21 29 29 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 31 31 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 32 32 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 33 33 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 34 34 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 35 35 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 36 36 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 37 37 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47164 * 300.00055 * 16 15 13 39 39 H 1.08993 * 109.47331 * 60.00820 * 16 15 13 40 40 H 0.96995 * 120.00103 * 359.97438 * 19 17 16 41 41 H 1.09000 * 109.46663 * 299.99352 * 20 19 17 42 42 H 1.09001 * 109.47524 * 59.99546 * 20 19 17 43 43 H 0.97006 * 119.99675 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2225 1.8594 0.7841 15 8 4.1237 0.9845 -1.2427 16 6 5.5745 1.0158 -1.2921 17 6 6.0441 0.4653 -2.6141 18 8 5.2357 0.0838 -3.4337 19 7 7.3626 0.3961 -2.8852 20 6 7.8191 -0.1384 -4.1705 21 6 9.3248 -0.1060 -4.2217 22 1 9.8856 0.2750 -3.3810 23 6 9.9865 -0.5629 -5.3417 24 7 9.3036 -1.0274 -6.3652 25 14 11.8529 -0.5221 -5.4054 26 1 12.4042 -1.3480 -4.3013 27 1 12.3158 -1.0652 -6.7078 28 1 12.3228 0.8789 -5.2578 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 0.0795 2.3915 -0.8426 35 1 -1.9066 3.8440 -0.9052 36 1 -2.5287 5.1688 1.0731 37 1 -1.1726 5.0383 3.1229 38 1 5.9197 2.0440 -1.1838 39 1 5.9788 0.4095 -0.4816 40 1 8.0091 0.7009 -2.2295 41 1 7.4735 -1.1664 -4.2797 42 1 7.4152 0.4688 -4.9806 43 1 9.7691 -1.3491 -7.1530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786540598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:13 Heat of formation + Delta-G solvation = -196.092620 kcal Electronic energy + Delta-G solvation = -28414.722279 eV Core-core repulsion = 23953.556223 eV Total energy + Delta-G solvation = -4461.166056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.86612 -42.27804 -41.19166 -40.34573 -38.68984 -37.61907 -36.20083 -34.93849 -34.42668 -31.74960 -31.20150 -30.89070 -29.22007 -28.05887 -24.78100 -24.46668 -23.54701 -23.41346 -21.76957 -21.67822 -19.99661 -19.41232 -18.81005 -18.36175 -18.03670 -17.79523 -17.54005 -17.25849 -17.01463 -16.84418 -16.39176 -16.16810 -15.98729 -15.85297 -15.57027 -14.87123 -14.81077 -14.55939 -14.37301 -14.10476 -13.93904 -13.87656 -13.72158 -13.39846 -13.17957 -12.98955 -12.96828 -12.69459 -12.69272 -12.41212 -12.24953 -12.14834 -12.03396 -11.71059 -11.54494 -11.51587 -10.94995 -10.81328 -9.94759 -9.94504 -9.30237 -8.30059 -6.46561 0.10708 0.18043 0.74646 0.80350 1.44140 1.47228 1.51706 1.55596 1.96742 2.33917 2.51391 2.58386 3.05101 3.18780 3.29506 3.45593 3.51173 3.65936 3.76002 3.89427 3.97770 3.98476 4.14237 4.27331 4.30046 4.33419 4.48860 4.66427 4.89532 4.95650 5.01658 5.03366 5.07741 5.09007 5.21602 5.24834 5.28420 5.39954 5.42182 5.59542 5.61634 5.81420 6.09276 6.37660 6.61603 6.74912 7.18760 7.33126 8.81595 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025605 B = 0.001838 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.283255 B =15231.639095 C =15577.141734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.097 3.903 4 H 0.142 0.858 5 O -0.303 6.303 6 C 0.073 3.927 7 C -0.187 4.187 8 C -0.081 4.081 9 C -0.119 4.119 10 C -0.117 4.117 11 C 0.036 3.964 12 F -0.153 7.153 13 C 0.462 3.538 14 O -0.514 6.514 15 O -0.333 6.333 16 C 0.058 3.942 17 C 0.503 3.497 18 O -0.579 6.579 19 N -0.699 5.699 20 C 0.267 3.733 21 C -0.559 4.559 22 H 0.085 0.915 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.984 3.016 26 H -0.263 1.263 27 H -0.286 1.286 28 H -0.263 1.263 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.412 0.588 41 H -0.006 1.006 42 H -0.006 1.006 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.051 10.038 16.135 30.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.040 3.960 4 H 0.159 0.841 5 O -0.218 6.218 6 C 0.028 3.972 7 C -0.205 4.205 8 C -0.098 4.098 9 C -0.137 4.137 10 C -0.135 4.135 11 C 0.016 3.984 12 F -0.132 7.132 13 C 0.304 3.696 14 O -0.402 6.402 15 O -0.249 6.249 16 C -0.019 4.019 17 C 0.288 3.712 18 O -0.459 6.459 19 N -0.350 5.350 20 C 0.145 3.855 21 C -0.597 4.597 22 H 0.103 0.897 23 C -0.194 4.194 24 N -0.567 5.567 25 Si 0.807 3.193 26 H -0.188 1.188 27 H -0.211 1.211 28 H -0.187 1.187 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.186 0.814 37 H 0.177 0.823 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.248 0.752 41 H 0.012 0.988 42 H 0.012 0.988 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.195 9.752 15.837 30.518 hybrid contribution 1.773 -0.151 0.185 1.789 sum -22.422 9.601 16.022 29.183 Atomic orbital electron populations 1.21914 0.92204 1.03910 1.02733 1.22026 0.99179 0.91196 1.04878 1.22069 0.86552 0.98328 0.89045 0.84081 1.86189 1.43683 1.58997 1.32894 1.19318 0.89032 0.93318 0.95553 1.21581 0.97811 1.04180 0.96902 1.21493 0.94983 0.93349 1.00015 1.21427 1.00706 1.00176 0.91399 1.21373 0.92587 0.97825 1.01725 1.17543 0.95578 1.02980 0.82300 1.91459 1.76350 1.95593 1.49784 1.23879 0.92348 0.73795 0.79577 1.90702 1.65767 1.43365 1.40317 1.86509 1.22981 1.75844 1.39526 1.22826 0.77633 1.05301 0.96102 1.20536 0.83080 0.79078 0.88503 1.90686 1.54617 1.50177 1.50457 1.46050 1.05891 1.62854 1.20211 1.18636 0.94539 0.92252 0.80092 1.21581 0.90840 1.44005 1.03264 0.89704 1.26026 1.04823 0.93949 0.94647 1.70120 1.38411 1.41668 1.06455 0.85219 0.77397 0.79112 0.77564 1.18786 1.21109 1.18749 0.90348 0.92872 0.90226 0.90765 0.87944 0.82440 0.81551 0.81388 0.82254 0.85795 0.85745 0.75156 0.98775 0.98779 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.49 71.98 0.61 -1.23 16 2 C -0.14 -2.31 5.62 30.60 0.17 -2.14 16 3 C 0.10 2.03 2.64 29.85 0.08 2.10 16 4 H 0.14 2.19 5.42 -2.38 -0.01 2.18 16 5 O -0.30 -7.53 8.98 -74.03 -0.66 -8.19 16 6 C 0.07 1.47 5.66 22.53 0.13 1.60 16 7 C -0.19 -2.42 7.38 22.36 0.16 -2.26 16 8 C -0.08 -0.66 10.04 22.26 0.22 -0.44 16 9 C -0.12 -0.95 10.04 22.28 0.22 -0.73 16 10 C -0.12 -1.51 10.02 22.30 0.22 -1.29 16 11 C 0.04 0.74 7.31 22.45 0.16 0.90 16 12 F -0.15 -4.03 17.11 44.97 0.77 -3.26 16 13 C 0.46 12.63 7.29 71.24 0.52 13.15 16 14 O -0.51 -16.87 16.26 28.39 0.46 -16.41 16 15 O -0.33 -9.81 9.72 -45.00 -0.44 -10.24 16 16 C 0.06 1.65 5.94 71.24 0.42 2.08 16 17 C 0.50 19.57 7.91 87.66 0.69 20.26 16 18 O -0.58 -27.99 16.50 15.76 0.26 -27.73 16 19 N -0.70 -28.31 5.55 -466.78 -2.59 -30.90 16 20 C 0.27 14.18 5.43 85.63 0.46 14.65 16 21 C -0.56 -29.62 9.28 25.60 0.24 -29.39 16 22 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 23 C 0.01 0.30 5.46 84.65 0.46 0.76 16 24 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 25 Si 0.98 41.59 29.54 68.60 2.03 43.62 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 27 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.75 6.54 -2.39 -0.02 0.73 16 31 H 0.08 0.69 6.74 -2.39 -0.02 0.67 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.16 1.50 4.28 -2.91 -0.01 1.49 16 35 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 36 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.12 2.97 8.13 -2.39 -0.02 2.96 16 39 H 0.12 2.99 8.13 -2.39 -0.02 2.97 16 40 H 0.41 13.51 8.32 -92.71 -0.77 12.74 16 41 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -78.89 375.12 5.19 -73.70 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.29 Total: 15.90 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 4.79 Total: 18.04 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.30 Total: -85.43 kcal Atomic # 8 Polarization: -62.20 SS G_CDS: -0.38 Total: -62.58 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.77 Total: -3.26 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -78.89 5.19 -73.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786540598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.394 kcal (2) G-P(sol) polarization free energy of solvation -78.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds