Wall clock time and date at job start Tue Mar 31 2020 22:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 H 1.08996 * 109.47527 * 54.99785 * 3 2 1 5 5 O 1.42902 * 109.47057 * 294.99580 * 3 2 1 6 6 C 1.35960 * 116.99644 * 99.40061 * 5 3 2 7 7 C 1.38659 * 120.06449 * 354.33675 * 6 5 3 8 8 C 1.38183 * 119.96970 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.09246 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.12715 * 359.97438 * 9 8 7 11 11 C 1.38332 * 120.03266 * 0.25646 * 10 9 8 12 12 F 1.35090 * 120.04976 * 179.72390 * 11 10 9 13 13 C 1.50704 * 109.46862 * 175.00098 * 3 2 1 14 14 O 1.20825 * 120.00161 * 120.00278 * 13 3 2 15 15 O 1.34224 * 120.00136 * 299.99287 * 13 3 2 16 16 C 1.45198 * 117.00386 * 180.02562 * 15 13 3 17 17 C 1.50699 * 109.47283 * 180.02562 * 16 15 13 18 18 O 1.21279 * 119.99897 * 0.02562 * 17 16 15 19 19 N 1.34781 * 120.00083 * 180.02562 * 17 16 15 20 20 C 1.46493 * 119.99829 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.46800 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99856 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99838 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00101 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46349 * 60.00298 * 25 23 21 27 27 H 1.48496 * 109.47331 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47133 * 300.00759 * 25 23 21 29 29 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47177 * 300.00349 * 1 2 3 31 31 H 1.09005 * 109.47016 * 60.00224 * 1 2 3 32 32 H 1.08999 * 109.47177 * 239.99651 * 2 1 3 33 33 H 1.08995 * 109.47058 * 119.99748 * 2 1 3 34 34 H 1.07994 * 120.01686 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.95136 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.93126 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.98408 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47327 * 300.00576 * 16 15 13 39 39 H 1.08995 * 109.46982 * 60.00264 * 16 15 13 40 40 H 0.96996 * 119.99362 * 0.02562 * 19 17 16 41 41 H 1.09002 * 109.47289 * 299.99709 * 20 19 17 42 42 H 1.08996 * 109.47239 * 60.00601 * 20 19 17 43 43 H 0.97004 * 120.00068 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8849 -1.1837 7 6 -0.1989 2.9634 -0.0297 8 6 -1.3122 3.7811 0.0064 9 6 -1.6652 4.5210 -1.1070 10 6 -0.9056 4.4458 -2.2597 11 6 0.2073 3.6252 -2.3031 12 9 0.9466 3.5472 -3.4310 13 6 3.5419 1.4443 0.1238 14 8 4.2191 1.9417 -0.7445 15 8 4.1273 0.8935 1.1987 16 6 5.5779 0.9318 1.2515 17 6 6.0520 0.2710 2.5202 18 8 5.2467 -0.1875 3.3026 19 7 7.3709 0.1896 2.7854 20 6 7.8318 -0.4533 4.0184 21 6 9.3373 -0.4123 4.0738 22 1 9.8949 0.0470 3.2711 23 6 10.0027 -0.9603 5.1499 24 7 9.3236 -1.5192 6.1277 25 14 11.8688 -0.9102 5.2183 26 1 12.3271 0.5022 5.1944 27 1 12.3360 -1.5606 6.4688 28 1 12.4266 -1.6315 4.0462 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.0754 2.3856 0.8405 35 1 -1.9079 3.8416 0.9052 36 1 -2.5361 5.1590 -1.0761 37 1 -1.1836 5.0244 -3.1281 38 1 5.9869 0.4017 0.3914 39 1 5.9148 1.9682 1.2334 40 1 8.0149 0.5566 2.1597 41 1 7.4224 0.0759 4.8790 42 1 7.4954 -1.4899 4.0354 43 1 9.7918 -1.9051 6.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786540603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:17 Heat of formation + Delta-G solvation = -174.462543 kcal Electronic energy + Delta-G solvation = -28413.591755 eV Core-core repulsion = 23953.363649 eV Total energy + Delta-G solvation = -4460.228105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.07362 -41.31991 -40.23330 -38.80880 -37.98336 -36.41886 -34.31796 -34.21382 -32.45182 -31.19640 -30.50218 -29.58540 -28.02365 -26.53804 -23.93510 -23.00242 -22.90440 -22.32294 -20.87411 -20.01289 -19.25944 -18.12434 -17.61820 -17.32094 -16.99297 -16.79375 -16.45172 -16.15076 -15.64142 -15.53314 -15.25956 -15.13928 -15.02398 -14.57834 -14.38335 -14.20710 -13.64229 -13.28422 -13.26333 -13.13879 -12.85656 -12.63150 -12.47426 -12.24510 -12.15535 -12.02261 -11.85270 -11.83041 -11.45436 -11.06272 -11.04225 -10.94054 -10.80674 -10.54989 -10.37482 -9.49115 -9.39285 -9.25637 -8.81330 -8.65622 -8.04187 -6.22450 -4.30159 0.65591 0.76220 1.72816 1.89601 2.88147 3.10201 3.10975 3.22501 3.27538 3.28886 3.78730 3.81109 4.13505 4.22487 4.25683 4.30559 4.38269 4.50362 4.71225 4.76327 4.82343 4.93227 5.03311 5.08181 5.13080 5.15644 5.25646 5.26992 5.44612 5.57064 5.62229 5.62918 5.70369 5.84981 5.91555 6.12403 6.14681 6.75314 7.17396 7.24518 7.41396 7.47028 7.57997 7.88417 8.44279 8.66312 8.90396 9.36299 10.87541 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.001832 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.360098 B =15283.185015 C =15666.387027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.095 3.905 4 H 0.120 0.880 5 O -0.277 6.277 6 C 0.098 3.902 7 C -0.186 4.186 8 C -0.087 4.087 9 C -0.128 4.128 10 C -0.117 4.117 11 C 0.073 3.927 12 F -0.130 7.130 13 C 0.459 3.541 14 O -0.485 6.485 15 O -0.322 6.322 16 C 0.049 3.951 17 C 0.501 3.499 18 O -0.534 6.534 19 N -0.705 5.705 20 C 0.252 3.748 21 C -0.547 4.547 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.885 5.885 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.393 0.607 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.275 10.059 -15.021 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.037 3.963 4 H 0.137 0.863 5 O -0.190 6.190 6 C 0.052 3.948 7 C -0.204 4.204 8 C -0.106 4.106 9 C -0.146 4.146 10 C -0.136 4.136 11 C 0.053 3.947 12 F -0.108 7.108 13 C 0.299 3.701 14 O -0.371 6.371 15 O -0.238 6.238 16 C -0.029 4.029 17 C 0.283 3.717 18 O -0.412 6.412 19 N -0.355 5.355 20 C 0.131 3.869 21 C -0.585 4.585 22 H 0.082 0.918 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.226 0.774 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.410 9.698 -14.698 29.293 hybrid contribution 1.662 0.229 -0.320 1.708 sum -21.748 9.927 -15.018 28.232 Atomic orbital electron populations 1.21938 0.94046 1.03126 1.02220 1.22035 0.97639 0.92550 1.05462 1.21902 0.88932 0.97001 0.88424 0.86302 1.86234 1.42242 1.58323 1.32239 1.19044 0.88655 0.92713 0.94350 1.21366 0.97655 1.03757 0.97629 1.21047 0.95815 0.94852 0.98843 1.20979 1.00480 1.00750 0.92402 1.21063 0.93646 0.98582 1.00298 1.17011 0.94183 1.01080 0.82383 1.91530 1.75760 1.95186 1.48336 1.23201 0.91096 0.75690 0.80093 1.90722 1.65075 1.41222 1.40037 1.86507 1.22996 1.72040 1.42226 1.22951 0.77124 1.03364 0.99430 1.19827 0.84019 0.81180 0.86635 1.90708 1.53817 1.47813 1.48815 1.46372 1.04786 1.58730 1.25654 1.19184 0.94351 0.93227 0.80088 1.21169 0.90604 1.40052 1.06695 0.91791 1.24950 0.99217 0.94666 0.95123 1.69960 1.36078 1.36981 1.09142 0.86441 0.84284 0.78425 0.77570 1.20025 1.21025 1.20016 0.91282 0.91981 0.92185 0.89814 0.87846 0.83741 0.84727 0.84693 0.83935 0.88228 0.88289 0.77362 0.95217 0.95201 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.48 37.16 0.32 -0.76 16 2 C -0.14 -1.23 5.60 -26.73 -0.15 -1.38 16 3 C 0.10 1.01 2.65 -27.88 -0.07 0.93 16 4 H 0.12 0.99 5.43 -51.93 -0.28 0.70 16 5 O -0.28 -3.38 8.98 -39.57 -0.36 -3.73 16 6 C 0.10 1.01 5.66 -39.18 -0.22 0.78 16 7 C -0.19 -1.38 7.36 -39.45 -0.29 -1.67 16 8 C -0.09 -0.50 10.04 -39.59 -0.40 -0.90 16 9 C -0.13 -0.72 10.04 -39.57 -0.40 -1.11 16 10 C -0.12 -0.84 10.02 -39.54 -0.40 -1.24 16 11 C 0.07 0.75 7.31 -39.30 -0.29 0.47 16 12 F -0.13 -1.61 17.11 2.25 0.04 -1.57 16 13 C 0.46 6.33 7.33 36.01 0.26 6.59 16 14 O -0.48 -7.96 16.25 -25.48 -0.41 -8.37 16 15 O -0.32 -4.82 9.56 -45.89 -0.44 -5.26 16 16 C 0.05 0.72 5.94 36.01 0.21 0.93 16 17 C 0.50 9.70 7.91 -10.98 -0.09 9.61 16 18 O -0.53 -12.55 16.50 -14.10 -0.23 -12.78 16 19 N -0.71 -14.24 5.55 -61.47 -0.34 -14.58 16 20 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 21 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 22 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 24 N -0.88 -25.54 13.29 55.43 0.74 -24.80 16 25 Si 0.91 20.51 29.54 -169.99 -5.02 15.48 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.34 6.73 -51.93 -0.35 0.00 16 31 H 0.06 0.45 6.53 -51.93 -0.34 0.11 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.93 7.99 -51.93 -0.42 0.51 16 34 H 0.15 0.86 4.27 -52.49 -0.22 0.63 16 35 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.10 1.29 8.13 -51.93 -0.42 0.86 16 39 H 0.10 1.28 8.13 -51.93 -0.42 0.85 16 40 H 0.39 6.68 8.32 -40.82 -0.34 6.34 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -34.59 374.80 -7.62 -42.21 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.29 Total: 2.21 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.95 Total: 5.55 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.40 Total: -39.39 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -1.44 Total: -30.14 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.59 -7.62 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786540603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.250 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds