Wall clock time and date at job start Tue Mar 31 2020 22:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 H 1.08996 * 109.47527 * 54.99785 * 3 2 1 5 5 O 1.42902 * 109.47057 * 294.99580 * 3 2 1 6 6 C 1.35960 * 116.99644 * 99.40061 * 5 3 2 7 7 C 1.38659 * 120.06449 * 354.33675 * 6 5 3 8 8 C 1.38183 * 119.96970 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.09246 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.12715 * 359.97438 * 9 8 7 11 11 C 1.38332 * 120.03266 * 0.25646 * 10 9 8 12 12 F 1.35090 * 120.04976 * 179.72390 * 11 10 9 13 13 C 1.50704 * 109.46862 * 175.00098 * 3 2 1 14 14 O 1.20825 * 120.00161 * 120.00278 * 13 3 2 15 15 O 1.34224 * 120.00136 * 299.99287 * 13 3 2 16 16 C 1.45198 * 117.00386 * 180.02562 * 15 13 3 17 17 C 1.50699 * 109.47283 * 180.02562 * 16 15 13 18 18 O 1.21279 * 119.99897 * 0.02562 * 17 16 15 19 19 N 1.34781 * 120.00083 * 180.02562 * 17 16 15 20 20 C 1.46493 * 119.99829 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.46800 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99856 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99838 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00101 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46349 * 60.00298 * 25 23 21 27 27 H 1.48496 * 109.47331 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47133 * 300.00759 * 25 23 21 29 29 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47177 * 300.00349 * 1 2 3 31 31 H 1.09005 * 109.47016 * 60.00224 * 1 2 3 32 32 H 1.08999 * 109.47177 * 239.99651 * 2 1 3 33 33 H 1.08995 * 109.47058 * 119.99748 * 2 1 3 34 34 H 1.07994 * 120.01686 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.95136 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.93126 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.98408 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47327 * 300.00576 * 16 15 13 39 39 H 1.08995 * 109.46982 * 60.00264 * 16 15 13 40 40 H 0.96996 * 119.99362 * 0.02562 * 19 17 16 41 41 H 1.09002 * 109.47289 * 299.99709 * 20 19 17 42 42 H 1.08996 * 109.47239 * 60.00601 * 20 19 17 43 43 H 0.97004 * 120.00068 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8849 -1.1837 7 6 -0.1989 2.9634 -0.0297 8 6 -1.3122 3.7811 0.0064 9 6 -1.6652 4.5210 -1.1070 10 6 -0.9056 4.4458 -2.2597 11 6 0.2073 3.6252 -2.3031 12 9 0.9466 3.5472 -3.4310 13 6 3.5419 1.4443 0.1238 14 8 4.2191 1.9417 -0.7445 15 8 4.1273 0.8935 1.1987 16 6 5.5779 0.9318 1.2515 17 6 6.0520 0.2710 2.5202 18 8 5.2467 -0.1875 3.3026 19 7 7.3709 0.1896 2.7854 20 6 7.8318 -0.4533 4.0184 21 6 9.3373 -0.4123 4.0738 22 1 9.8949 0.0470 3.2711 23 6 10.0027 -0.9603 5.1499 24 7 9.3236 -1.5192 6.1277 25 14 11.8688 -0.9102 5.2183 26 1 12.3271 0.5022 5.1944 27 1 12.3360 -1.5606 6.4688 28 1 12.4266 -1.6315 4.0462 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.0754 2.3856 0.8405 35 1 -1.9079 3.8416 0.9052 36 1 -2.5361 5.1590 -1.0761 37 1 -1.1836 5.0244 -3.1281 38 1 5.9869 0.4017 0.3914 39 1 5.9148 1.9682 1.2334 40 1 8.0149 0.5566 2.1597 41 1 7.4224 0.0759 4.8790 42 1 7.4954 -1.4899 4.0354 43 1 9.7918 -1.9051 6.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786540603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:16 Heat of formation + Delta-G solvation = -196.036836 kcal Electronic energy + Delta-G solvation = -28414.527286 eV Core-core repulsion = 23953.363649 eV Total energy + Delta-G solvation = -4461.163637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.86565 -42.27736 -41.19096 -40.34415 -38.68717 -37.62015 -36.19990 -34.93851 -34.42574 -31.75161 -31.19651 -30.88914 -29.21655 -28.05717 -24.78228 -24.45999 -23.54665 -23.40511 -21.77811 -21.67479 -19.99350 -19.41332 -18.81368 -18.36290 -18.04265 -17.77996 -17.53937 -17.25944 -17.00595 -16.84561 -16.39252 -16.15549 -15.98618 -15.85825 -15.57090 -14.86746 -14.81014 -14.56243 -14.37381 -14.10024 -13.93566 -13.87616 -13.72144 -13.39461 -13.18168 -12.98716 -12.96811 -12.69492 -12.69271 -12.41110 -12.24961 -12.14723 -12.02871 -11.70012 -11.54616 -11.51648 -10.94829 -10.81292 -9.94624 -9.94388 -9.29937 -8.30022 -6.46536 0.10826 0.18344 0.72944 0.82446 1.44119 1.47219 1.51881 1.55610 1.96988 2.33947 2.51469 2.58550 3.05127 3.18861 3.29038 3.45531 3.51251 3.66166 3.76010 3.89538 3.97983 3.98631 4.14676 4.27554 4.30556 4.33507 4.49065 4.66839 4.89620 4.96085 5.02379 5.03612 5.07889 5.09112 5.21682 5.24944 5.28652 5.40084 5.42258 5.59747 5.61730 5.81447 6.09540 6.37599 6.61666 6.75020 7.18834 7.33224 8.81632 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.001832 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.360098 B =15283.185015 C =15666.387027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.098 3.902 4 H 0.144 0.856 5 O -0.304 6.304 6 C 0.073 3.927 7 C -0.187 4.187 8 C -0.080 4.080 9 C -0.119 4.119 10 C -0.117 4.117 11 C 0.035 3.965 12 F -0.153 7.153 13 C 0.462 3.538 14 O -0.514 6.514 15 O -0.333 6.333 16 C 0.058 3.942 17 C 0.503 3.497 18 O -0.579 6.579 19 N -0.699 5.699 20 C 0.267 3.733 21 C -0.559 4.559 22 H 0.085 0.915 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.984 3.016 26 H -0.263 1.263 27 H -0.286 1.286 28 H -0.263 1.263 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.412 0.588 41 H -0.006 1.006 42 H -0.006 1.006 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.118 11.481 -15.425 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.041 3.959 4 H 0.161 0.839 5 O -0.218 6.218 6 C 0.028 3.972 7 C -0.205 4.205 8 C -0.098 4.098 9 C -0.137 4.137 10 C -0.135 4.135 11 C 0.016 3.984 12 F -0.132 7.132 13 C 0.304 3.696 14 O -0.402 6.402 15 O -0.248 6.248 16 C -0.019 4.019 17 C 0.288 3.712 18 O -0.459 6.459 19 N -0.350 5.350 20 C 0.145 3.855 21 C -0.597 4.597 22 H 0.103 0.897 23 C -0.194 4.194 24 N -0.567 5.567 25 Si 0.807 3.193 26 H -0.188 1.188 27 H -0.211 1.211 28 H -0.188 1.188 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.176 0.824 35 H 0.185 0.815 36 H 0.186 0.814 37 H 0.177 0.823 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.248 0.752 41 H 0.012 0.988 42 H 0.012 0.988 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.261 11.148 -15.150 30.698 hybrid contribution 1.774 -0.163 -0.193 1.792 sum -22.487 10.985 -15.343 29.356 Atomic orbital electron populations 1.21918 0.92251 1.03883 1.02729 1.22031 0.99141 0.91276 1.04876 1.22068 0.86543 0.98252 0.89082 0.83944 1.86186 1.43518 1.59154 1.32923 1.19319 0.88934 0.93399 0.95530 1.21581 0.97817 1.04137 0.96951 1.21495 0.94995 0.93332 1.00008 1.21424 1.00686 1.00233 0.91382 1.21368 0.92629 0.97768 1.01744 1.17542 0.95647 1.03105 0.82120 1.91457 1.76609 1.95557 1.49570 1.23874 0.92315 0.74394 0.78997 1.90703 1.65959 1.42641 1.40903 1.86506 1.22912 1.72393 1.42999 1.22822 0.77635 1.04434 0.96969 1.20534 0.83072 0.80038 0.87552 1.90685 1.54848 1.49620 1.50767 1.46050 1.05917 1.58572 1.24475 1.18636 0.94490 0.91139 0.81256 1.21583 0.90874 1.39894 1.07345 0.89705 1.26026 1.04823 0.93995 0.94592 1.70118 1.38429 1.38108 1.10003 0.85221 0.77400 0.78972 0.77709 1.18751 1.21106 1.18783 0.90415 0.90202 0.92863 0.90822 0.87965 0.82425 0.81536 0.81393 0.82267 0.85810 0.85746 0.75160 0.98767 0.98786 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.48 71.98 0.61 -1.26 16 2 C -0.14 -2.34 5.60 30.59 0.17 -2.17 16 3 C 0.10 2.03 2.65 29.85 0.08 2.11 16 4 H 0.14 2.18 5.43 -2.39 -0.01 2.16 16 5 O -0.30 -7.53 8.98 -74.02 -0.66 -8.19 16 6 C 0.07 1.48 5.66 22.53 0.13 1.60 16 7 C -0.19 -2.40 7.36 22.36 0.16 -2.23 16 8 C -0.08 -0.65 10.04 22.26 0.22 -0.43 16 9 C -0.12 -0.94 10.04 22.28 0.22 -0.72 16 10 C -0.12 -1.50 10.02 22.30 0.22 -1.28 16 11 C 0.04 0.73 7.31 22.45 0.16 0.90 16 12 F -0.15 -4.03 17.11 44.97 0.77 -3.26 16 13 C 0.46 12.62 7.33 71.24 0.52 13.14 16 14 O -0.51 -16.87 16.25 28.40 0.46 -16.41 16 15 O -0.33 -9.77 9.56 -45.00 -0.43 -10.20 16 16 C 0.06 1.65 5.94 71.24 0.42 2.07 16 17 C 0.50 19.56 7.91 87.66 0.69 20.25 16 18 O -0.58 -27.96 16.50 15.77 0.26 -27.70 16 19 N -0.70 -28.31 5.55 -466.79 -2.59 -30.90 16 20 C 0.27 14.18 5.43 85.64 0.46 14.65 16 21 C -0.56 -29.63 9.28 25.60 0.24 -29.39 16 22 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 23 C 0.01 0.31 5.46 84.65 0.46 0.77 16 24 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 25 Si 0.98 41.59 29.54 68.60 2.03 43.62 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 27 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.69 6.73 -2.39 -0.02 0.68 16 31 H 0.05 0.75 6.53 -2.38 -0.02 0.74 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.79 7.99 -2.39 -0.02 1.77 16 34 H 0.16 1.47 4.27 -2.91 -0.01 1.46 16 35 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 36 H 0.17 0.23 8.06 -2.91 -0.02 0.20 16 37 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.12 2.98 8.13 -2.39 -0.02 2.96 16 39 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 40 H 0.41 13.51 8.32 -92.71 -0.77 12.74 16 41 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -78.89 374.80 5.20 -73.69 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.29 Total: 15.88 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 4.79 Total: 18.01 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.30 Total: -85.43 kcal Atomic # 8 Polarization: -62.13 SS G_CDS: -0.37 Total: -62.50 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.77 Total: -3.26 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -78.89 5.20 -73.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786540603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.351 kcal (2) G-P(sol) polarization free energy of solvation -78.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds