Wall clock time and date at job start Tue Mar 31 2020 22:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47230 * 2 1 4 4 C 1.53001 * 109.47230 * 180.02562 * 3 2 1 5 5 S 1.81402 * 109.47201 * 179.97438 * 4 3 2 6 6 O 1.42100 * 110.54119 * 68.37638 * 5 4 3 7 7 O 1.42099 * 110.54122 * 291.62568 * 5 4 3 8 8 N 1.65601 * 104.44832 * 179.97438 * 5 4 3 9 9 C 1.34773 * 119.99914 * 64.99767 * 8 5 4 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 5 11 11 C 1.50706 * 119.99984 * 179.97438 * 9 8 5 12 12 C 1.52994 * 109.46995 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47639 * 54.05331 * 12 11 9 14 14 C 1.50698 * 109.46998 * 294.05407 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08382 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08385 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09003 * 109.47304 * 300.00407 * 1 2 3 29 29 H 1.09004 * 109.47164 * 59.99937 * 1 2 3 30 30 H 1.08993 * 109.47638 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46721 * 240.00045 * 2 1 3 32 32 H 1.08994 * 109.46718 * 119.99861 * 2 1 3 33 33 H 1.09003 * 109.47310 * 59.99597 * 3 2 1 34 34 H 1.09004 * 109.47098 * 300.00103 * 3 2 1 35 35 H 1.09000 * 109.46721 * 60.00045 * 4 3 2 36 36 H 1.08994 * 109.46718 * 299.99861 * 4 3 2 37 37 H 0.97001 * 120.00047 * 245.00031 * 8 5 4 38 38 H 1.08997 * 109.46866 * 60.00030 * 11 9 8 39 39 H 1.09002 * 109.46876 * 300.00416 * 11 9 8 40 40 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 41 41 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 42 42 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 43 43 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 44 44 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8792 3.7866 1.2355 7 8 3.8781 3.7859 -1.2385 8 7 5.8244 3.0077 -0.0013 9 6 6.4525 2.4568 -1.0589 10 8 5.8095 2.0677 -2.0109 11 6 7.9538 2.3254 -1.0591 12 6 8.4084 1.6733 -2.3663 13 1 8.0081 2.2343 -3.2107 14 6 7.9041 0.2543 -2.4217 15 1 7.7623 -0.3045 -1.5084 16 6 7.6238 -0.3307 -3.6383 17 7 7.9169 0.3001 -4.7544 18 14 6.8277 -2.0195 -3.7014 19 1 6.6319 -2.4219 -5.1174 20 1 7.7055 -3.0063 -3.0226 21 1 5.5120 -1.9724 -3.0143 22 6 9.9140 1.6742 -2.4310 23 6 10.6459 0.9473 -1.5108 24 6 12.0268 0.9450 -1.5724 25 6 12.6762 1.6762 -2.5495 26 6 11.9445 2.4072 -3.4666 27 6 10.5635 2.4064 -3.4072 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9329 0.9288 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 6.3386 3.3192 0.7599 38 1 8.2644 1.7071 -0.2169 39 1 8.4050 3.3136 -0.9702 40 1 8.2592 1.2071 -4.7233 41 1 10.1386 0.3791 -0.7450 42 1 12.5985 0.3741 -0.8557 43 1 13.7552 1.6765 -2.5961 44 1 12.4519 2.9788 -4.2296 45 1 9.9918 2.9772 -4.1240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796616364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:59 Heat of formation + Delta-G solvation = -109.427330 kcal Electronic energy + Delta-G solvation = -27691.906501 eV Core-core repulsion = 23800.711710 eV Total energy + Delta-G solvation = -3891.194791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.70799 -38.44949 -37.06805 -36.03551 -35.87592 -34.53901 -34.02288 -31.45085 -30.63845 -30.18094 -29.09841 -25.41615 -24.48267 -23.21899 -21.83987 -21.50475 -21.19749 -19.87630 -19.41300 -17.87107 -17.21961 -16.79107 -16.42885 -16.07534 -15.86349 -15.16543 -14.91302 -14.44079 -14.24106 -14.06933 -13.80402 -13.67874 -13.52033 -13.02343 -13.00643 -12.73837 -12.56705 -12.31757 -12.13442 -11.99840 -11.96760 -11.90310 -11.72105 -11.64882 -11.45239 -11.19471 -10.84334 -10.81169 -10.72770 -10.51819 -10.26363 -10.22086 -10.14661 -9.79556 -9.62195 -8.76830 -8.39979 -8.20788 -7.73112 -6.35013 -4.05547 0.14257 2.12199 2.16598 2.49636 2.73469 3.40750 3.43769 3.61051 3.66923 4.19411 4.38183 4.50427 4.57384 4.63579 4.75568 4.89011 5.05021 5.22258 5.28407 5.33985 5.44267 5.49137 5.54006 5.55391 5.59924 5.67660 5.78024 5.82871 5.86205 5.86560 5.99452 6.06039 6.11715 6.23238 6.30907 6.48155 6.69604 6.81919 6.96075 7.08067 7.15855 7.29742 7.60579 7.77739 8.05697 8.11861 8.36745 8.84505 9.65157 11.04955 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.003759 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.481001 B = 7447.497691 C = 8941.556932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.110 4.110 4 C -0.621 4.621 5 S 2.591 3.409 6 O -0.960 6.960 7 O -0.932 6.932 8 N -1.063 6.063 9 C 0.530 3.470 10 O -0.454 6.454 11 C -0.119 4.119 12 C 0.068 3.932 13 H 0.055 0.945 14 C -0.579 4.579 15 H 0.048 0.952 16 C 0.034 3.966 17 N -0.899 5.899 18 Si 1.060 2.940 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.288 1.288 22 C -0.033 4.033 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.124 4.124 27 C -0.129 4.129 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.428 0.572 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.272 0.728 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 2.408 12.039 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.149 4.149 4 C -0.751 4.751 5 S 2.687 3.313 6 O -0.951 6.951 7 O -0.922 6.922 8 N -0.829 5.829 9 C 0.316 3.684 10 O -0.321 6.321 11 C -0.161 4.161 12 C 0.048 3.952 13 H 0.073 0.927 14 C -0.616 4.616 15 H 0.066 0.934 16 C -0.173 4.173 17 N -0.534 5.534 18 Si 0.889 3.111 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.215 1.215 22 C -0.033 4.033 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.147 4.147 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.169 0.831 36 H 0.151 0.849 37 H 0.263 0.737 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.451 1.734 10.214 11.706 hybrid contribution 1.111 0.521 1.488 1.928 sum -4.340 2.255 11.701 12.682 Atomic orbital electron populations 1.21808 0.95510 1.01936 1.02023 1.21484 0.95927 0.95216 1.03030 1.21354 0.90036 1.00065 1.03471 1.30511 1.06729 1.24891 1.12994 1.05689 0.73509 0.77763 0.74389 1.93602 1.82839 1.73267 1.45362 1.93649 1.82214 1.72001 1.44354 1.55272 1.28899 1.70439 1.28339 1.21017 0.92845 0.74471 0.80039 1.90909 1.67172 1.42213 1.31817 1.21856 0.88986 1.01781 1.03523 1.17940 0.86948 0.98135 0.92138 0.92681 1.21541 1.47743 0.97251 0.95106 0.93389 1.25594 0.94662 1.04768 0.92249 1.70754 1.40277 1.13488 1.28854 0.83675 0.76244 0.74989 0.76185 1.20795 1.21651 1.21482 1.20744 0.98086 0.91907 0.92595 1.20906 0.92920 0.98985 0.99803 1.21017 0.94894 0.99931 0.98898 1.20845 0.98687 1.00177 0.97240 1.20976 0.94363 1.00047 0.98797 1.21079 0.93952 1.00353 0.99334 0.92639 0.92413 0.92421 0.91028 0.91536 0.90553 0.90126 0.83148 0.84931 0.73713 0.89090 0.90403 0.91643 0.86688 0.87407 0.87536 0.87392 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.11 -1.22 5.22 -26.73 -0.14 -1.36 16 4 C -0.62 -7.65 5.88 37.16 0.22 -7.43 16 5 S 2.59 37.25 5.11 -107.50 -0.55 36.70 16 6 O -0.96 -14.39 18.08 -57.54 -1.04 -15.43 16 7 O -0.93 -17.53 17.04 -64.79 -1.10 -18.63 16 8 N -1.06 -14.40 5.60 31.22 0.17 -14.22 16 9 C 0.53 9.47 7.32 -10.98 -0.08 9.39 16 10 O -0.45 -10.15 13.12 -11.56 -0.15 -10.30 16 11 C -0.12 -2.07 4.94 -27.88 -0.14 -2.21 16 12 C 0.07 1.50 1.31 -92.93 -0.12 1.38 16 13 H 0.06 1.39 6.23 -51.93 -0.32 1.07 16 14 C -0.58 -14.54 6.40 -34.44 -0.22 -14.76 16 15 H 0.05 1.18 7.82 -52.49 -0.41 0.77 16 16 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 17 N -0.90 -26.29 13.63 55.43 0.76 -25.54 16 18 Si 1.06 24.75 29.91 -169.99 -5.08 19.66 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 23 C -0.11 -2.06 8.88 -39.59 -0.35 -2.41 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 25 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 26 C -0.12 -2.17 10.05 -39.59 -0.40 -2.57 16 27 C -0.13 -2.57 9.67 -39.59 -0.38 -2.95 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.15 2.16 7.19 -51.92 -0.37 1.78 16 36 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.43 4.08 8.79 -34.47 -0.30 3.78 16 38 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.27 7.87 6.68 -40.82 -0.27 7.60 16 41 H 0.12 2.09 7.80 -52.48 -0.41 1.68 16 42 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.11 2.19 7.95 -52.49 -0.42 1.78 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -34.90 387.43 -10.74 -45.65 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.79 Total: 7.34 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: -2.80 Total: -31.08 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.93 Total: -39.76 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.30 Total: -44.35 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Atomic # 16 Polarization: 37.25 SS G_CDS: -0.55 Total: 36.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.90 -10.74 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796616364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.779 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds