Wall clock time and date at job start Tue Mar 31 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46669 * 2 1 4 4 C 1.53005 * 109.47084 * 179.97438 * 3 2 1 5 5 S 1.81402 * 109.47285 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54019 * 68.37632 * 5 4 3 7 7 O 1.42092 * 110.54522 * 291.62766 * 5 4 3 8 8 N 1.65596 * 104.45129 * 179.97438 * 5 4 3 9 9 C 1.34778 * 119.99602 * 65.00035 * 8 5 4 10 10 O 1.21279 * 120.00261 * 359.73047 * 9 8 5 11 11 C 1.50700 * 120.00030 * 179.72201 * 9 8 5 12 12 C 1.52997 * 109.47279 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47522 * 305.00429 * 12 11 9 14 14 C 1.50699 * 109.46993 * 65.00773 * 12 11 9 15 15 H 1.08005 * 119.99726 * 234.67884 * 14 12 11 16 16 C 1.37873 * 120.00442 * 54.67147 * 14 12 11 17 17 N 1.31512 * 119.99857 * 4.88190 * 16 14 12 18 18 Si 1.86797 * 120.00393 * 184.87232 * 16 14 12 19 19 H 1.48505 * 109.47129 * 90.00207 * 18 16 14 20 20 H 1.48492 * 109.47499 * 210.00556 * 18 16 14 21 21 H 1.48502 * 109.47158 * 330.00604 * 18 16 14 22 22 C 1.50702 * 109.47289 * 185.00360 * 12 11 9 23 23 C 1.38229 * 120.00396 * 151.48797 * 22 12 11 24 24 C 1.38235 * 120.00392 * 179.78971 * 23 22 12 25 25 C 1.38239 * 119.99757 * 0.43892 * 24 23 22 26 26 C 1.38240 * 119.99850 * 359.81189 * 25 24 23 27 27 C 1.38228 * 120.00101 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47325 * 60.00320 * 1 2 3 29 29 H 1.09009 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47513 * 299.99757 * 1 2 3 31 31 H 1.08999 * 109.47513 * 240.00243 * 2 1 3 32 32 H 1.08996 * 109.47325 * 119.99680 * 2 1 3 33 33 H 1.09004 * 109.47592 * 60.00184 * 3 2 1 34 34 H 1.09002 * 109.47373 * 299.99960 * 3 2 1 35 35 H 1.08999 * 109.47199 * 60.00181 * 4 3 2 36 36 H 1.08996 * 109.47224 * 299.99873 * 4 3 2 37 37 H 0.96994 * 120.00494 * 244.73197 * 8 5 4 38 38 H 1.08996 * 109.47564 * 300.00578 * 11 9 8 39 39 H 1.09006 * 109.46906 * 60.00691 * 11 9 8 40 40 H 0.97003 * 120.00338 * 179.97438 * 17 16 14 41 41 H 1.08008 * 120.00098 * 359.97438 * 23 22 12 42 42 H 1.07995 * 120.00437 * 180.27559 * 24 23 22 43 43 H 1.07997 * 119.99667 * 179.83821 * 25 24 23 44 44 H 1.07996 * 119.99522 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00143 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 16 4.1745 3.1529 -0.0001 6 8 3.8778 3.7872 1.2364 7 8 3.8789 3.7858 -1.2375 8 7 5.8241 3.0081 0.0014 9 6 6.4531 2.4570 -1.0556 10 8 5.8106 2.0627 -2.0056 11 6 7.9548 2.3308 -1.0570 12 6 8.4105 1.6773 -2.3632 13 1 7.8943 0.7261 -2.4930 14 6 8.0859 2.5871 -3.5199 15 1 7.4990 2.2187 -4.3484 16 6 8.5379 3.8896 -3.5206 17 7 9.3317 4.3106 -2.5603 18 14 8.0231 5.0563 -4.8856 19 1 6.7711 5.7530 -4.4953 20 1 9.0964 6.0570 -5.1125 21 1 7.7924 4.2862 -6.1342 22 6 9.8977 1.4391 -2.3136 23 6 10.4548 0.3955 -3.0286 24 6 11.8196 0.1796 -2.9866 25 6 12.6261 1.0019 -2.2222 26 6 12.0684 2.0424 -1.5029 27 6 10.7043 2.2609 -1.5485 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9337 0.9287 -0.8891 36 1 3.9329 0.9290 0.8908 37 1 6.3380 3.3234 0.7612 38 1 8.4027 3.3208 -0.9708 39 1 8.2685 1.7154 -0.2137 40 1 9.6501 5.2269 -2.5609 41 1 9.8242 -0.2495 -3.6226 42 1 12.2554 -0.6330 -3.5487 43 1 13.6920 0.8316 -2.1872 44 1 12.6985 2.6844 -0.9055 45 1 10.2685 3.0735 -0.9863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796616419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:03 Heat of formation + Delta-G solvation = -99.462206 kcal Electronic energy + Delta-G solvation = -27818.263619 eV Core-core repulsion = 23927.500948 eV Total energy + Delta-G solvation = -3890.762671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.50640 -38.17132 -36.94981 -36.01782 -35.81277 -34.44805 -33.84655 -31.16033 -30.67371 -29.89140 -28.61657 -26.08577 -24.53301 -23.02334 -21.71312 -21.47525 -20.89814 -19.56971 -19.25419 -17.70398 -17.04400 -16.41432 -16.19706 -16.01902 -15.59087 -15.10620 -14.96888 -14.38550 -14.16516 -13.95145 -13.90679 -13.54402 -13.31992 -13.04499 -12.90050 -12.53980 -12.28733 -12.03662 -11.91283 -11.85142 -11.80666 -11.73675 -11.62705 -11.51467 -11.50360 -10.97208 -10.89684 -10.86381 -10.65376 -10.51805 -10.25135 -10.10904 -10.00527 -9.48723 -9.38251 -9.15199 -8.51509 -7.86347 -7.51107 -6.05074 -4.16029 0.23080 2.43572 2.52037 2.62252 2.96847 3.33606 3.39563 3.44832 3.78694 4.24686 4.37883 4.41655 4.63771 4.71248 4.90665 4.97645 5.14756 5.18352 5.24113 5.30808 5.44357 5.53263 5.58519 5.71579 5.76678 5.80112 5.83860 5.92875 5.95566 6.04323 6.17235 6.34113 6.41605 6.61655 6.70099 6.88678 7.07145 7.15604 7.21379 7.34883 7.47115 7.62807 7.87362 8.00852 8.09971 8.23274 8.31496 8.83658 9.49568 10.89061 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.003501 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.408025 B = 7995.950749 C = 8798.116361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.112 4.112 4 C -0.622 4.622 5 S 2.589 3.411 6 O -0.961 6.961 7 O -0.928 6.928 8 N -1.061 6.061 9 C 0.540 3.460 10 O -0.483 6.483 11 C -0.142 4.142 12 C 0.086 3.914 13 H 0.041 0.959 14 C -0.478 4.478 15 H 0.062 0.938 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.028 4.028 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.070 4.070 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.429 0.571 38 H 0.142 0.858 39 H 0.066 0.934 40 H 0.263 0.737 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 -7.213 9.392 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.151 4.151 4 C -0.752 4.752 5 S 2.684 3.316 6 O -0.952 6.952 7 O -0.918 6.918 8 N -0.827 5.827 9 C 0.329 3.671 10 O -0.352 6.352 11 C -0.184 4.184 12 C 0.067 3.933 13 H 0.059 0.941 14 C -0.516 4.516 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.029 4.029 23 C -0.149 4.149 24 C -0.159 4.159 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.088 4.088 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.264 0.736 38 H 0.159 0.841 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.620 -6.519 8.674 13.258 hybrid contribution 0.427 0.395 -0.460 0.742 sum -7.192 -6.123 8.213 12.517 Atomic orbital electron populations 1.21814 0.95522 1.01896 1.02134 1.21473 0.95949 0.95288 1.02780 1.21362 0.90173 0.99923 1.03608 1.30533 1.06650 1.25576 1.12454 1.05750 0.73784 0.77617 0.74464 1.93599 1.83037 1.73032 1.45503 1.93665 1.82333 1.71590 1.44216 1.55210 1.28516 1.70457 1.28539 1.21307 0.93177 0.73491 0.79106 1.90766 1.67701 1.45296 1.31482 1.22150 0.87872 1.07671 1.00736 1.17682 0.87798 0.95558 0.92297 0.94098 1.21016 1.30716 0.94849 1.04990 0.91932 1.24896 0.94348 0.98250 0.96384 1.69635 1.33063 1.17174 1.33023 0.86577 0.78304 0.80747 0.82508 1.20361 1.21336 1.19863 1.20277 0.97954 0.91860 0.92831 1.20882 0.94368 0.99059 1.00579 1.20806 0.94122 1.00123 1.00874 1.20783 0.98205 0.97745 1.00393 1.21049 0.95997 0.98013 1.00962 1.21364 0.92149 0.97058 0.98270 0.92401 0.92461 0.92563 0.91244 0.91580 0.90499 0.90106 0.83592 0.85081 0.73581 0.84110 0.91570 0.92692 0.87608 0.88054 0.88259 0.88025 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.03 5.93 -26.73 -0.16 -1.19 16 3 C -0.11 -1.16 5.22 -26.73 -0.14 -1.30 16 4 C -0.62 -7.13 5.88 37.16 0.22 -6.91 16 5 S 2.59 39.32 5.11 -107.50 -0.55 38.77 16 6 O -0.96 -15.36 18.08 -57.54 -1.04 -16.40 16 7 O -0.93 -18.74 17.05 -64.76 -1.10 -19.84 16 8 N -1.06 -16.01 5.60 31.22 0.17 -15.83 16 9 C 0.54 10.28 7.32 -10.98 -0.08 10.20 16 10 O -0.48 -10.59 13.08 -11.48 -0.15 -10.74 16 11 C -0.14 -2.76 4.07 -27.88 -0.11 -2.88 16 12 C 0.09 1.92 1.97 -92.92 -0.18 1.74 16 13 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 14 C -0.48 -12.35 7.27 -34.44 -0.25 -12.60 16 15 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 16 C 0.06 1.59 5.12 -17.82 -0.09 1.50 16 17 N -0.89 -22.09 7.99 55.43 0.44 -21.64 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 23 C -0.13 -2.64 9.71 -39.59 -0.38 -3.03 16 24 C -0.14 -2.59 10.05 -39.58 -0.40 -2.99 16 25 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 26 C -0.14 -2.69 10.05 -39.58 -0.40 -3.08 16 27 C -0.07 -1.45 7.45 -39.58 -0.30 -1.75 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.15 1.80 7.18 -51.92 -0.37 1.43 16 36 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.43 4.99 8.79 -34.47 -0.30 4.68 16 38 H 0.14 2.96 4.70 -51.93 -0.24 2.71 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 41 H 0.11 2.02 8.06 -52.48 -0.42 1.59 16 42 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 44 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.14 2.93 5.18 -52.49 -0.27 2.66 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -32.33 377.85 -10.99 -43.32 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.64 Total: 7.48 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -2.79 Total: -27.37 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.62 Total: -37.47 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -2.29 Total: -46.98 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 39.32 SS G_CDS: -0.55 Total: 38.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.33 -10.99 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796616419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.146 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds