Wall clock time and date at job start Tue Mar 31 2020 22:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46669 * 2 1 4 4 C 1.53005 * 109.47084 * 179.97438 * 3 2 1 5 5 S 1.81402 * 109.47285 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54019 * 68.37632 * 5 4 3 7 7 O 1.42092 * 110.54522 * 291.62766 * 5 4 3 8 8 N 1.65596 * 104.45129 * 179.97438 * 5 4 3 9 9 C 1.34778 * 119.99602 * 65.00035 * 8 5 4 10 10 O 1.21279 * 120.00261 * 359.73047 * 9 8 5 11 11 C 1.50700 * 120.00030 * 179.72201 * 9 8 5 12 12 C 1.52997 * 109.47279 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47522 * 305.00429 * 12 11 9 14 14 C 1.50699 * 109.46993 * 65.00773 * 12 11 9 15 15 H 1.08005 * 119.99726 * 234.67884 * 14 12 11 16 16 C 1.37873 * 120.00442 * 54.67147 * 14 12 11 17 17 N 1.31512 * 119.99857 * 4.88190 * 16 14 12 18 18 Si 1.86797 * 120.00393 * 184.87232 * 16 14 12 19 19 H 1.48505 * 109.47129 * 90.00207 * 18 16 14 20 20 H 1.48492 * 109.47499 * 210.00556 * 18 16 14 21 21 H 1.48502 * 109.47158 * 330.00604 * 18 16 14 22 22 C 1.50702 * 109.47289 * 185.00360 * 12 11 9 23 23 C 1.38229 * 120.00396 * 151.48797 * 22 12 11 24 24 C 1.38235 * 120.00392 * 179.78971 * 23 22 12 25 25 C 1.38239 * 119.99757 * 0.43892 * 24 23 22 26 26 C 1.38240 * 119.99850 * 359.81189 * 25 24 23 27 27 C 1.38228 * 120.00101 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47325 * 60.00320 * 1 2 3 29 29 H 1.09009 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47513 * 299.99757 * 1 2 3 31 31 H 1.08999 * 109.47513 * 240.00243 * 2 1 3 32 32 H 1.08996 * 109.47325 * 119.99680 * 2 1 3 33 33 H 1.09004 * 109.47592 * 60.00184 * 3 2 1 34 34 H 1.09002 * 109.47373 * 299.99960 * 3 2 1 35 35 H 1.08999 * 109.47199 * 60.00181 * 4 3 2 36 36 H 1.08996 * 109.47224 * 299.99873 * 4 3 2 37 37 H 0.96994 * 120.00494 * 244.73197 * 8 5 4 38 38 H 1.08996 * 109.47564 * 300.00578 * 11 9 8 39 39 H 1.09006 * 109.46906 * 60.00691 * 11 9 8 40 40 H 0.97003 * 120.00338 * 179.97438 * 17 16 14 41 41 H 1.08008 * 120.00098 * 359.97438 * 23 22 12 42 42 H 1.07995 * 120.00437 * 180.27559 * 24 23 22 43 43 H 1.07997 * 119.99667 * 179.83821 * 25 24 23 44 44 H 1.07996 * 119.99522 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00143 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 16 4.1745 3.1529 -0.0001 6 8 3.8778 3.7872 1.2364 7 8 3.8789 3.7858 -1.2375 8 7 5.8241 3.0081 0.0014 9 6 6.4531 2.4570 -1.0556 10 8 5.8106 2.0627 -2.0056 11 6 7.9548 2.3308 -1.0570 12 6 8.4105 1.6773 -2.3632 13 1 7.8943 0.7261 -2.4930 14 6 8.0859 2.5871 -3.5199 15 1 7.4990 2.2187 -4.3484 16 6 8.5379 3.8896 -3.5206 17 7 9.3317 4.3106 -2.5603 18 14 8.0231 5.0563 -4.8856 19 1 6.7711 5.7530 -4.4953 20 1 9.0964 6.0570 -5.1125 21 1 7.7924 4.2862 -6.1342 22 6 9.8977 1.4391 -2.3136 23 6 10.4548 0.3955 -3.0286 24 6 11.8196 0.1796 -2.9866 25 6 12.6261 1.0019 -2.2222 26 6 12.0684 2.0424 -1.5029 27 6 10.7043 2.2609 -1.5485 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9337 0.9287 -0.8891 36 1 3.9329 0.9290 0.8908 37 1 6.3380 3.3234 0.7612 38 1 8.4027 3.3208 -0.9708 39 1 8.2685 1.7154 -0.2137 40 1 9.6501 5.2269 -2.5609 41 1 9.8242 -0.2495 -3.6226 42 1 12.2554 -0.6330 -3.5487 43 1 13.6920 0.8316 -2.1872 44 1 12.6985 2.6844 -0.9055 45 1 10.2685 3.0735 -0.9863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796616419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:01 Heat of formation + Delta-G solvation = -119.421946 kcal Electronic energy + Delta-G solvation = -27819.129138 eV Core-core repulsion = 23927.500948 eV Total energy + Delta-G solvation = -3891.628190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.03359 -39.67921 -38.27224 -37.22237 -36.74801 -36.14246 -35.28097 -32.96999 -31.47256 -31.38164 -30.13195 -27.86976 -25.37571 -24.67492 -23.17250 -22.42483 -22.18337 -21.13911 -20.56785 -19.05286 -18.50689 -17.99218 -17.57429 -17.24810 -16.88691 -16.81839 -16.20913 -15.93475 -15.53207 -15.40474 -15.01608 -14.79424 -14.66591 -14.34860 -13.94197 -13.84850 -13.74347 -13.41967 -13.38040 -13.28492 -13.20659 -13.12440 -12.85323 -12.75674 -12.73200 -12.53140 -12.32304 -12.21356 -11.90357 -11.84677 -11.67931 -11.58193 -11.30845 -11.12494 -11.03444 -10.85569 -10.41214 -9.36587 -9.09929 -7.97411 -6.12740 -0.96863 0.92230 1.02892 1.29223 1.34769 1.40250 1.46000 1.53846 2.43822 2.60345 3.10331 3.18180 3.40321 3.44412 3.69182 3.81116 3.99092 4.23418 4.24585 4.35315 4.44645 4.50313 4.52622 4.53298 4.68855 4.69882 4.79439 4.83598 4.89156 4.94857 5.10694 5.16448 5.17933 5.26436 5.32269 5.41543 5.56585 5.63195 5.69505 5.85492 5.93275 5.98191 6.12752 6.34787 6.43632 6.60874 6.78647 6.89339 7.51356 8.91003 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.003501 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.408025 B = 7995.950749 C = 8798.116361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.595 4.595 5 S 2.586 3.414 6 O -0.970 6.970 7 O -0.986 6.986 8 N -1.049 6.049 9 C 0.542 3.458 10 O -0.518 6.518 11 C -0.138 4.138 12 C 0.085 3.915 13 H 0.032 0.968 14 C -0.494 4.494 15 H 0.033 0.967 16 C 0.037 3.963 17 N -0.883 5.883 18 Si 0.917 3.083 19 H -0.293 1.293 20 H -0.277 1.277 21 H -0.280 1.280 22 C -0.050 4.050 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.082 4.082 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.444 0.556 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.262 0.738 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.124 0.876 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 -8.605 11.150 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.162 4.162 4 C -0.729 4.729 5 S 2.687 3.313 6 O -0.961 6.961 7 O -0.976 6.976 8 N -0.815 5.815 9 C 0.332 3.668 10 O -0.390 6.390 11 C -0.180 4.180 12 C 0.065 3.935 13 H 0.051 0.949 14 C -0.532 4.532 15 H 0.052 0.948 16 C -0.163 4.163 17 N -0.522 5.522 18 Si 0.745 3.255 19 H -0.220 1.220 20 H -0.202 1.202 21 H -0.205 1.205 22 C -0.051 4.051 23 C -0.166 4.166 24 C -0.159 4.159 25 C -0.167 4.167 26 C -0.165 4.165 27 C -0.101 4.101 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.188 0.812 37 H 0.282 0.718 38 H 0.146 0.854 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.142 0.858 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.459 -7.851 10.467 14.591 hybrid contribution 0.069 0.737 -0.964 1.215 sum -6.390 -7.114 9.503 13.481 Atomic orbital electron populations 1.21838 0.94711 1.02690 1.02309 1.21500 0.96698 0.93877 1.03379 1.21567 0.89115 1.01455 1.04080 1.30330 1.07475 1.20974 1.14155 1.05668 0.73322 0.79294 0.73061 1.93579 1.82836 1.74631 1.45061 1.93599 1.82960 1.74527 1.46545 1.54882 1.28861 1.69637 1.28146 1.21255 0.93128 0.73179 0.79255 1.90755 1.68340 1.46984 1.32939 1.22030 0.88061 1.07250 1.00655 1.17611 0.88855 0.94594 0.92393 0.94919 1.21064 1.30700 0.95896 1.05515 0.94839 1.25169 0.94982 0.98735 0.97439 1.69707 1.32771 1.17007 1.32708 0.86194 0.77635 0.80086 0.81548 1.22000 1.20212 1.20546 1.20256 0.97341 0.93184 0.94321 1.21079 0.95666 0.99130 1.00769 1.21156 0.93295 1.00791 1.00653 1.21193 0.99916 0.96652 0.98983 1.21351 0.95452 0.98605 1.01140 1.21353 0.93148 0.96950 0.98624 0.92912 0.91372 0.91798 0.91723 0.89943 0.88936 0.91054 0.84142 0.81184 0.71762 0.85353 0.87909 0.92768 0.87538 0.85168 0.84925 0.85793 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.12 -1.80 5.93 30.59 0.18 -1.62 16 3 C -0.12 -2.37 5.22 30.60 0.16 -2.21 16 4 C -0.60 -12.70 5.88 71.98 0.42 -12.28 16 5 S 2.59 78.18 5.11 -56.49 -0.29 77.89 16 6 O -0.97 -30.23 18.08 -127.65 -2.31 -32.53 16 7 O -0.99 -41.32 17.05 -120.75 -2.06 -43.38 16 8 N -1.05 -31.21 5.60 -173.53 -0.97 -32.18 16 9 C 0.54 20.77 7.32 87.66 0.64 21.41 16 10 O -0.52 -23.37 13.08 13.26 0.17 -23.20 16 11 C -0.14 -5.34 4.07 29.85 0.12 -5.22 16 12 C 0.08 3.85 1.97 -12.29 -0.02 3.82 16 13 H 0.03 1.48 7.91 -2.39 -0.02 1.46 16 14 C -0.49 -26.30 7.27 25.60 0.19 -26.11 16 15 H 0.03 1.92 7.82 -2.91 -0.02 1.89 16 16 C 0.04 1.92 5.12 84.65 0.43 2.36 16 17 N -0.88 -43.93 7.99 21.45 0.17 -43.76 16 18 Si 0.92 44.93 29.54 68.60 2.03 46.95 16 19 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 22 C -0.05 -2.15 4.69 -19.86 -0.09 -2.25 16 23 C -0.15 -5.86 9.71 22.27 0.22 -5.65 16 24 C -0.14 -4.79 10.05 22.27 0.22 -4.57 16 25 C -0.15 -4.86 10.05 22.27 0.22 -4.63 16 26 C -0.15 -5.19 10.05 22.27 0.22 -4.97 16 27 C -0.08 -3.32 7.45 22.27 0.17 -3.16 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.14 3.35 7.18 -2.39 -0.02 3.34 16 36 H 0.17 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.44 9.89 8.79 -96.75 -0.85 9.04 16 38 H 0.13 5.38 4.70 -2.39 -0.01 5.37 16 39 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 40 H 0.26 12.77 8.31 -92.71 -0.77 12.00 16 41 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 45 H 0.13 5.45 5.18 -2.91 -0.02 5.43 16 Total: -1.00 -71.23 377.85 0.69 -70.54 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.15 Total: 26.17 kcal Atomic # 6 Polarization: -50.29 SS G_CDS: 3.80 Total: -46.50 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -0.80 Total: -75.94 kcal Atomic # 8 Polarization: -94.92 SS G_CDS: -4.19 Total: -99.12 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 78.18 SS G_CDS: -0.29 Total: 77.89 kcal Total: -71.23 0.69 -70.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796616419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.883 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds