Wall clock time and date at job start Tue Mar 31 2020 22:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47267 * 2 1 4 4 C 1.53001 * 109.47050 * 119.99817 * 2 1 3 5 5 S 1.81397 * 109.47461 * 175.00306 * 4 2 1 6 6 O 1.42095 * 110.54198 * 68.37197 * 5 4 2 7 7 O 1.42100 * 110.53915 * 291.62386 * 5 4 2 8 8 N 1.65598 * 104.45216 * 180.02562 * 5 4 2 9 9 C 1.34774 * 120.00131 * 64.99676 * 8 5 4 10 10 O 1.21284 * 120.00090 * 0.02562 * 9 8 5 11 11 C 1.50706 * 119.99980 * 180.02562 * 9 8 5 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47580 * 294.05539 * 12 11 9 15 15 H 1.08005 * 119.99732 * 330.09013 * 14 12 11 16 16 C 1.37877 * 119.99972 * 150.08105 * 14 12 11 17 17 N 1.31515 * 120.00290 * 6.57438 * 16 14 12 18 18 Si 1.86802 * 119.99915 * 186.57040 * 16 14 12 19 19 H 1.48498 * 109.47273 * 270.00336 * 18 16 14 20 20 H 1.48504 * 109.46873 * 29.99953 * 18 16 14 21 21 H 1.48494 * 109.47284 * 150.00162 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08994 * 109.47289 * 300.00034 * 1 2 3 29 29 H 1.09006 * 109.46836 * 60.00446 * 1 2 3 30 30 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47299 * 239.99413 * 2 1 3 32 32 H 1.08993 * 109.47602 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47159 * 299.99959 * 3 2 1 34 34 H 1.09003 * 109.47532 * 59.99537 * 3 2 1 35 35 H 1.09007 * 109.47057 * 54.99828 * 4 2 1 36 36 H 1.09005 * 109.46918 * 295.00359 * 4 2 1 37 37 H 0.97002 * 119.99812 * 245.00487 * 8 5 4 38 38 H 1.08999 * 109.47117 * 60.00062 * 11 9 8 39 39 H 1.08991 * 109.47084 * 300.00132 * 11 9 8 40 40 H 0.97003 * 119.99370 * 354.72262 * 17 16 14 41 41 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 42 42 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 43 43 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 44 44 H 1.08002 * 119.99754 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8478 -0.8514 1.1768 6 8 4.4458 0.4307 1.3102 7 8 4.2426 -1.7396 0.1402 8 7 4.2615 -1.6427 2.5714 9 6 3.8670 -2.9167 2.7657 10 8 3.2094 -3.4838 1.9189 11 6 4.2429 -3.6367 4.0351 12 6 3.6743 -5.0567 4.0036 13 1 3.9990 -5.5579 3.0918 14 6 2.1688 -4.9959 4.0345 15 1 1.6716 -4.1783 4.5354 16 6 1.4262 -5.9838 3.4234 17 7 2.0249 -7.0442 2.9265 18 14 -0.4302 -5.8163 3.3011 19 1 -1.0623 -6.4270 4.4981 20 1 -0.7938 -4.3782 3.2289 21 1 -0.9105 -6.5103 2.0793 22 6 4.1707 -5.8233 5.2023 23 6 3.8069 -5.4268 6.4756 24 6 4.2590 -6.1323 7.5749 25 6 5.0818 -7.2295 7.4014 26 6 5.4499 -7.6229 6.1284 27 6 4.9946 -6.9197 5.0289 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6053 -1.7198 1.2952 36 1 1.7515 -0.1582 2.1370 37 1 4.7876 -1.1893 3.2485 38 1 3.8337 -3.1008 4.8916 39 1 5.3286 -3.6815 4.1195 40 1 2.9935 -7.0963 2.9212 41 1 3.1671 -4.5672 6.6113 42 1 3.9717 -5.8247 8.5696 43 1 5.4373 -7.7791 8.2605 44 1 6.0931 -8.4799 5.9928 45 1 5.2818 -7.2273 4.0343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796679369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:06 Heat of formation + Delta-G solvation = -105.205401 kcal Electronic energy + Delta-G solvation = -28012.792106 eV Core-core repulsion = 24121.780391 eV Total energy + Delta-G solvation = -3891.011714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.71219 -38.45033 -37.11391 -36.52718 -35.93452 -34.53948 -34.02210 -31.45024 -30.18079 -29.11543 -27.97752 -27.37018 -25.38230 -23.22642 -21.83429 -21.30567 -20.79378 -19.87316 -19.39270 -17.92054 -17.29724 -16.82997 -16.45003 -16.02400 -15.64586 -15.03191 -14.72057 -14.51146 -14.29451 -14.10124 -13.79702 -13.66198 -13.45808 -13.00807 -12.78897 -12.60390 -12.56337 -12.39059 -12.28773 -12.18026 -11.99261 -11.95986 -11.66414 -11.61284 -11.24194 -11.17551 -11.03781 -10.81087 -10.70725 -10.51369 -10.26994 -10.22660 -10.15342 -9.80180 -9.61901 -8.77025 -8.39594 -8.20773 -7.73006 -6.35132 -4.05552 0.15069 2.12215 2.16648 2.49995 2.73110 3.40572 3.44889 3.59148 3.66368 4.17735 4.31520 4.50185 4.56953 4.59998 4.76689 4.88987 5.12423 5.22836 5.32301 5.43208 5.44448 5.54011 5.55047 5.56379 5.61502 5.67671 5.74291 5.82386 5.86136 5.91499 6.04204 6.06008 6.08674 6.23219 6.30873 6.48134 6.69604 6.81892 6.95930 7.08067 7.15864 7.29729 7.60647 7.77756 8.05611 8.11646 8.37113 8.84605 9.65144 11.04906 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.003877 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.842199 B = 7220.884417 C = 8585.163228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.180 4.180 4 C -0.616 4.616 5 S 2.590 3.410 6 O -0.957 6.957 7 O -0.933 6.933 8 N -1.064 6.064 9 C 0.529 3.471 10 O -0.454 6.454 11 C -0.119 4.119 12 C 0.067 3.933 13 H 0.055 0.945 14 C -0.579 4.579 15 H 0.048 0.952 16 C 0.034 3.966 17 N -0.900 5.900 18 Si 1.063 2.937 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.284 1.284 22 C -0.032 4.032 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.124 4.124 27 C -0.129 4.129 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.150 0.850 36 H 0.133 0.867 37 H 0.428 0.572 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.272 0.728 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 12.919 1.885 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C -0.237 4.237 4 C -0.747 4.747 5 S 2.686 3.314 6 O -0.948 6.948 7 O -0.923 6.923 8 N -0.830 5.830 9 C 0.316 3.684 10 O -0.321 6.321 11 C -0.161 4.161 12 C 0.048 3.952 13 H 0.073 0.927 14 C -0.616 4.616 15 H 0.067 0.933 16 C -0.173 4.173 17 N -0.534 5.534 18 Si 0.892 3.108 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.033 4.033 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.170 4.170 26 C -0.142 4.142 27 C -0.147 4.147 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.168 0.832 36 H 0.151 0.849 37 H 0.263 0.737 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.250 11.939 0.078 12.004 hybrid contribution 0.955 0.798 1.440 1.903 sum 2.205 12.737 1.518 13.015 Atomic orbital electron populations 1.21787 0.93116 1.02807 1.02110 1.20843 0.98632 0.95878 0.94965 1.22329 1.02685 0.95426 1.03301 1.30580 1.25218 1.11739 1.07168 1.05734 0.78133 0.73688 0.73869 1.93589 1.75032 1.40665 1.85483 1.93649 1.80004 1.64274 1.54384 1.55273 1.63539 1.24100 1.40098 1.21025 0.77809 0.79292 0.90260 1.90906 1.33692 1.64200 1.43337 1.21856 1.00924 0.99776 0.93590 1.17948 0.96963 0.87992 0.92295 0.92674 1.21571 0.88986 1.12337 1.38745 0.93341 1.25596 1.06338 0.92294 0.93061 1.70724 1.12268 1.26839 1.43617 0.83630 0.75001 0.75339 0.76787 1.21677 1.21608 1.20949 1.20739 0.91095 0.95200 0.96269 1.20906 0.99340 1.00326 0.92050 1.21017 0.98984 0.96549 0.98188 1.20846 1.01079 0.98465 0.96563 1.20978 1.00708 0.99490 0.93012 1.21080 0.98725 0.96796 0.98122 0.92210 0.92014 0.91760 0.89600 0.90953 0.91224 0.91478 0.83152 0.84875 0.73720 0.89079 0.90388 0.91609 0.86684 0.87402 0.87534 0.87388 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 2 C -0.08 -0.95 2.92 -90.62 -0.26 -1.21 16 3 C -0.18 -1.82 8.88 37.16 0.33 -1.49 16 4 C -0.62 -7.80 5.33 37.16 0.20 -7.60 16 5 S 2.59 37.82 4.76 -107.50 -0.51 37.31 16 6 O -0.96 -14.02 15.83 -57.54 -0.91 -14.94 16 7 O -0.93 -17.77 17.03 -64.80 -1.10 -18.88 16 8 N -1.06 -14.63 5.60 31.22 0.17 -14.45 16 9 C 0.53 9.56 7.32 -10.98 -0.08 9.48 16 10 O -0.45 -10.22 13.12 -11.61 -0.15 -10.37 16 11 C -0.12 -2.08 4.94 -27.88 -0.14 -2.22 16 12 C 0.07 1.50 1.31 -92.92 -0.12 1.38 16 13 H 0.06 1.39 6.23 -51.93 -0.32 1.07 16 14 C -0.58 -14.58 6.40 -34.44 -0.22 -14.80 16 15 H 0.05 1.20 7.82 -52.48 -0.41 0.78 16 16 C 0.03 0.92 5.45 -17.82 -0.10 0.83 16 17 N -0.90 -26.34 13.63 55.43 0.76 -25.59 16 18 Si 1.06 24.87 29.91 -169.99 -5.08 19.79 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 23 C -0.11 -2.06 8.88 -39.59 -0.35 -2.41 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 25 C -0.15 -2.51 10.05 -39.58 -0.40 -2.90 16 26 C -0.12 -2.18 10.05 -39.59 -0.40 -2.57 16 27 C -0.13 -2.57 9.67 -39.59 -0.38 -2.96 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.82 5.61 -51.93 -0.29 0.52 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.15 2.18 7.19 -51.92 -0.37 1.81 16 36 H 0.13 1.32 8.14 -51.92 -0.42 0.89 16 37 H 0.43 4.14 8.79 -34.47 -0.30 3.84 16 38 H 0.09 1.39 7.86 -51.93 -0.41 0.98 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.27 7.89 6.68 -40.82 -0.27 7.62 16 41 H 0.12 2.09 7.80 -52.48 -0.41 1.68 16 42 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.11 2.20 7.95 -52.49 -0.42 1.78 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -34.51 381.65 -10.22 -44.73 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.66 Total: 7.96 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: -2.48 Total: -31.31 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.93 Total: -40.04 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -2.17 Total: -44.19 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.79 kcal Atomic # 16 Polarization: 37.82 SS G_CDS: -0.51 Total: 37.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.51 -10.22 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796679369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.478 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds