Wall clock time and date at job start Tue Mar 31 2020 22:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 C 1.53003 * 109.47121 * 119.99961 * 2 1 3 5 5 S 1.81400 * 109.47055 * 64.99974 * 4 2 1 6 6 O 1.42099 * 110.54075 * 68.37783 * 5 4 2 7 7 O 1.42100 * 110.54039 * 291.62229 * 5 4 2 8 8 N 1.65608 * 104.44462 * 180.02562 * 5 4 2 9 9 C 1.34776 * 120.00225 * 65.00041 * 8 5 4 10 10 O 1.21279 * 119.99707 * 0.02562 * 9 8 5 11 11 C 1.50702 * 119.99692 * 180.27128 * 9 8 5 12 12 C 1.52995 * 109.46828 * 179.72573 * 11 9 8 13 13 H 1.09003 * 109.47418 * 304.99846 * 12 11 9 14 14 C 1.50696 * 109.47173 * 65.00132 * 12 11 9 15 15 H 1.07999 * 120.00108 * 234.67591 * 14 12 11 16 16 C 1.37874 * 120.00269 * 54.68278 * 14 12 11 17 17 N 1.31520 * 119.99892 * 4.86229 * 16 14 12 18 18 Si 1.86799 * 120.00426 * 184.87090 * 16 14 12 19 19 H 1.48502 * 109.47070 * 89.99239 * 18 16 14 20 20 H 1.48500 * 109.47168 * 209.99604 * 18 16 14 21 21 H 1.48497 * 109.46922 * 329.99841 * 18 16 14 22 22 C 1.50702 * 109.47088 * 185.00271 * 12 11 9 23 23 C 1.38238 * 120.00206 * 151.48420 * 22 12 11 24 24 C 1.38234 * 120.00102 * 179.78738 * 23 22 12 25 25 C 1.38234 * 119.99735 * 0.44057 * 24 23 22 26 26 C 1.38236 * 120.00405 * 359.81283 * 25 24 23 27 27 C 1.38233 * 119.99814 * 331.75953 * 22 12 11 28 28 H 1.08996 * 109.47332 * 59.99952 * 1 2 3 29 29 H 1.08996 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46872 * 300.00166 * 1 2 3 31 31 H 1.08998 * 109.46872 * 239.99833 * 2 1 3 32 32 H 1.09005 * 109.46916 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47026 * 299.99450 * 3 2 1 34 34 H 1.08994 * 109.47017 * 60.00010 * 3 2 1 35 35 H 1.09001 * 109.46914 * 304.99912 * 4 2 1 36 36 H 1.08999 * 109.47012 * 185.00561 * 4 2 1 37 37 H 0.96999 * 119.99115 * 244.99769 * 8 5 4 38 38 H 1.08994 * 109.47448 * 299.72663 * 11 9 8 39 39 H 1.09002 * 109.46800 * 59.72409 * 11 9 8 40 40 H 0.96993 * 120.00319 * 180.02562 * 17 16 14 41 41 H 1.08005 * 119.99666 * 0.02562 * 23 22 12 42 42 H 1.07995 * 120.00315 * 180.27516 * 24 23 22 43 43 H 1.08005 * 120.00047 * 179.83278 * 25 24 23 44 44 H 1.07997 * 120.00478 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00133 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 1.5601 -2.4691 1.1766 6 8 2.2660 -3.1373 0.1400 7 8 0.1520 -2.6055 1.3101 8 7 2.1672 -3.1225 2.5720 9 6 1.6915 -2.7203 3.7671 10 8 0.8185 -1.8802 3.8207 11 6 2.2484 -3.3106 5.0370 12 6 1.5460 -2.6821 6.2422 13 1 1.6371 -1.5971 6.1908 14 6 0.0885 -3.0650 6.2302 15 1 -0.6715 -2.2984 6.2633 16 6 -0.2747 -4.3940 6.1771 17 7 0.6471 -5.3304 6.2335 18 14 -2.0760 -4.8646 6.0249 19 1 -2.4421 -4.9638 4.5891 20 1 -2.3027 -6.1752 6.6853 21 1 -2.9152 -3.8288 6.6792 22 6 2.1858 -3.1802 7.5125 23 6 2.1769 -2.3901 8.6469 24 6 2.7599 -2.8488 9.8133 25 6 3.3599 -4.0938 9.8428 26 6 3.3734 -4.8818 8.7071 27 6 2.7866 -4.4248 7.5418 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6442 1.2952 37 1 2.8652 -3.7948 2.5290 38 1 2.0820 -4.3877 5.0406 39 1 3.3179 -3.1080 5.0934 40 1 0.3916 -6.2653 6.1958 41 1 1.7110 -1.4160 8.6228 42 1 2.7491 -2.2335 10.7007 43 1 3.8178 -4.4512 10.7534 44 1 3.8425 -5.8543 8.7301 45 1 2.7971 -5.0404 6.6545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796679372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:10 Heat of formation + Delta-G solvation = -94.989462 kcal Electronic energy + Delta-G solvation = -28245.362630 eV Core-core repulsion = 24354.793912 eV Total energy + Delta-G solvation = -3890.568718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.50384 -38.17119 -36.98285 -36.54428 -35.79938 -34.44919 -33.84063 -31.15933 -29.89156 -28.64306 -27.98406 -27.33253 -26.06660 -23.03139 -21.68475 -20.96032 -20.77664 -19.55234 -19.23375 -17.78112 -17.04174 -16.61873 -16.17299 -15.76455 -15.31875 -15.13233 -14.82171 -14.40002 -14.19548 -13.94218 -13.88212 -13.40912 -13.28546 -12.92364 -12.63438 -12.54674 -12.29998 -12.28121 -12.13308 -11.86619 -11.79246 -11.65587 -11.55219 -11.49169 -11.24238 -11.04327 -10.96056 -10.86263 -10.58618 -10.50487 -10.25267 -10.10880 -10.00552 -9.48064 -9.38273 -9.15117 -8.51502 -7.86349 -7.51137 -6.05117 -4.16040 0.23738 2.43509 2.52061 2.62893 2.96872 3.33358 3.39297 3.44542 3.78348 4.23584 4.32098 4.41460 4.62785 4.74971 4.90637 5.08626 5.18287 5.21487 5.28360 5.47267 5.50796 5.58130 5.65818 5.72409 5.76595 5.83778 5.87583 5.95520 6.03246 6.17174 6.21633 6.34070 6.41589 6.61626 6.70068 6.88517 7.07094 7.15561 7.21305 7.34833 7.47081 7.62767 7.87328 8.00842 8.09939 8.23238 8.31720 8.83633 9.49500 10.89055 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.003789 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.273913 B = 7387.482720 C = 8196.023339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.619 4.619 5 S 2.588 3.412 6 O -0.962 6.962 7 O -0.925 6.925 8 N -1.062 6.062 9 C 0.540 3.460 10 O -0.481 6.481 11 C -0.142 4.142 12 C 0.086 3.914 13 H 0.041 0.959 14 C -0.478 4.478 15 H 0.062 0.938 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.028 4.028 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.070 4.070 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.428 0.572 38 H 0.142 0.858 39 H 0.066 0.934 40 H 0.263 0.737 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.206 6.870 -7.324 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.749 4.749 5 S 2.683 3.317 6 O -0.953 6.953 7 O -0.915 6.915 8 N -0.828 5.828 9 C 0.329 3.671 10 O -0.351 6.351 11 C -0.184 4.184 12 C 0.067 3.933 13 H 0.059 0.941 14 C -0.515 4.515 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.029 4.029 23 C -0.149 4.149 24 C -0.159 4.159 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.088 4.088 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.264 0.736 38 H 0.159 0.841 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.030 6.828 -7.902 12.589 hybrid contribution -0.380 -0.430 0.442 0.724 sum 6.650 6.398 -7.460 11.867 Atomic orbital electron populations 1.22318 0.93673 1.04504 1.03389 1.20831 0.96937 0.97930 0.94458 1.21789 1.01040 0.94443 1.02453 1.30614 1.11694 1.24286 1.08325 1.05794 0.75278 0.77474 0.73139 1.93598 1.75085 1.71971 1.54605 1.93652 1.28708 1.84746 1.84390 1.55216 1.51904 1.52336 1.23337 1.21302 0.80451 0.80429 0.84908 1.90766 1.27193 1.30930 1.86223 1.22149 0.97881 1.07143 0.91261 1.17683 0.94549 0.94588 0.86522 0.94106 1.21010 0.90541 0.92039 1.47922 0.91938 1.24898 0.97677 0.96508 0.94798 1.69635 1.32061 1.00342 1.50860 0.86579 0.85367 0.77694 0.78508 1.20365 1.21341 1.19876 1.20271 0.91988 0.93985 0.96640 1.20885 1.00859 0.99921 0.93231 1.20804 1.01218 0.96512 0.97393 1.20782 1.03004 0.95611 0.97729 1.21053 1.01860 0.98924 0.94190 1.21366 0.93938 0.95090 0.98455 0.91453 0.90673 0.91005 0.90037 0.92356 0.92021 0.91956 0.83504 0.85095 0.73635 0.84118 0.91589 0.92694 0.87609 0.88054 0.88261 0.88022 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.88 37.16 0.33 -1.83 16 2 C -0.08 -0.88 2.92 -90.61 -0.26 -1.14 16 3 C -0.14 -1.21 9.19 37.16 0.34 -0.86 16 4 C -0.62 -7.30 5.33 37.16 0.20 -7.10 16 5 S 2.59 39.83 4.76 -107.50 -0.51 39.32 16 6 O -0.96 -15.63 18.08 -57.54 -1.04 -16.67 16 7 O -0.92 -18.29 14.78 -64.80 -0.96 -19.25 16 8 N -1.06 -16.19 5.60 31.22 0.17 -16.02 16 9 C 0.54 10.30 7.32 -10.99 -0.08 10.22 16 10 O -0.48 -10.53 13.08 -11.60 -0.15 -10.68 16 11 C -0.14 -2.77 4.07 -27.88 -0.11 -2.88 16 12 C 0.09 1.92 1.97 -92.93 -0.18 1.74 16 13 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 14 C -0.48 -12.31 7.27 -34.44 -0.25 -12.56 16 15 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 16 C 0.06 1.59 5.12 -17.82 -0.09 1.49 16 17 N -0.89 -22.07 7.99 55.43 0.44 -21.62 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 23 C -0.13 -2.64 9.71 -39.58 -0.38 -3.03 16 24 C -0.14 -2.59 10.05 -39.58 -0.40 -2.98 16 25 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 26 C -0.14 -2.69 10.05 -39.58 -0.40 -3.08 16 27 C -0.07 -1.45 7.45 -39.58 -0.30 -1.75 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.04 5.61 -51.93 -0.29 0.75 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.15 1.85 7.19 -51.92 -0.37 1.48 16 36 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 37 H 0.43 5.07 8.79 -34.47 -0.30 4.77 16 38 H 0.14 2.96 4.70 -51.93 -0.24 2.71 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 41 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 42 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.10 1.52 8.06 -52.48 -0.42 1.09 16 44 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.14 2.93 5.18 -52.49 -0.27 2.66 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -31.72 372.10 -10.45 -42.17 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.51 Total: 8.63 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -2.48 Total: -28.02 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.62 Total: -37.64 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -2.15 Total: -46.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 39.83 SS G_CDS: -0.51 Total: 39.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.72 -10.45 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796679372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.821 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds