Wall clock time and date at job start Tue Mar 31 2020 22:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 C 1.53003 * 109.47121 * 119.99961 * 2 1 3 5 5 S 1.81400 * 109.47055 * 64.99974 * 4 2 1 6 6 O 1.42099 * 110.54075 * 68.37783 * 5 4 2 7 7 O 1.42100 * 110.54039 * 291.62229 * 5 4 2 8 8 N 1.65608 * 104.44462 * 180.02562 * 5 4 2 9 9 C 1.34776 * 120.00225 * 65.00041 * 8 5 4 10 10 O 1.21279 * 119.99707 * 0.02562 * 9 8 5 11 11 C 1.50702 * 119.99692 * 180.27128 * 9 8 5 12 12 C 1.52995 * 109.46828 * 179.72573 * 11 9 8 13 13 H 1.09003 * 109.47418 * 304.99846 * 12 11 9 14 14 C 1.50696 * 109.47173 * 65.00132 * 12 11 9 15 15 H 1.07999 * 120.00108 * 234.67591 * 14 12 11 16 16 C 1.37874 * 120.00269 * 54.68278 * 14 12 11 17 17 N 1.31520 * 119.99892 * 4.86229 * 16 14 12 18 18 Si 1.86799 * 120.00426 * 184.87090 * 16 14 12 19 19 H 1.48502 * 109.47070 * 89.99239 * 18 16 14 20 20 H 1.48500 * 109.47168 * 209.99604 * 18 16 14 21 21 H 1.48497 * 109.46922 * 329.99841 * 18 16 14 22 22 C 1.50702 * 109.47088 * 185.00271 * 12 11 9 23 23 C 1.38238 * 120.00206 * 151.48420 * 22 12 11 24 24 C 1.38234 * 120.00102 * 179.78738 * 23 22 12 25 25 C 1.38234 * 119.99735 * 0.44057 * 24 23 22 26 26 C 1.38236 * 120.00405 * 359.81283 * 25 24 23 27 27 C 1.38233 * 119.99814 * 331.75953 * 22 12 11 28 28 H 1.08996 * 109.47332 * 59.99952 * 1 2 3 29 29 H 1.08996 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46872 * 300.00166 * 1 2 3 31 31 H 1.08998 * 109.46872 * 239.99833 * 2 1 3 32 32 H 1.09005 * 109.46916 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47026 * 299.99450 * 3 2 1 34 34 H 1.08994 * 109.47017 * 60.00010 * 3 2 1 35 35 H 1.09001 * 109.46914 * 304.99912 * 4 2 1 36 36 H 1.08999 * 109.47012 * 185.00561 * 4 2 1 37 37 H 0.96999 * 119.99115 * 244.99769 * 8 5 4 38 38 H 1.08994 * 109.47448 * 299.72663 * 11 9 8 39 39 H 1.09002 * 109.46800 * 59.72409 * 11 9 8 40 40 H 0.96993 * 120.00319 * 180.02562 * 17 16 14 41 41 H 1.08005 * 119.99666 * 0.02562 * 23 22 12 42 42 H 1.07995 * 120.00315 * 180.27516 * 24 23 22 43 43 H 1.08005 * 120.00047 * 179.83278 * 25 24 23 44 44 H 1.07997 * 120.00478 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00133 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 1.5601 -2.4691 1.1766 6 8 2.2660 -3.1373 0.1400 7 8 0.1520 -2.6055 1.3101 8 7 2.1672 -3.1225 2.5720 9 6 1.6915 -2.7203 3.7671 10 8 0.8185 -1.8802 3.8207 11 6 2.2484 -3.3106 5.0370 12 6 1.5460 -2.6821 6.2422 13 1 1.6371 -1.5971 6.1908 14 6 0.0885 -3.0650 6.2302 15 1 -0.6715 -2.2984 6.2633 16 6 -0.2747 -4.3940 6.1771 17 7 0.6471 -5.3304 6.2335 18 14 -2.0760 -4.8646 6.0249 19 1 -2.4421 -4.9638 4.5891 20 1 -2.3027 -6.1752 6.6853 21 1 -2.9152 -3.8288 6.6792 22 6 2.1858 -3.1802 7.5125 23 6 2.1769 -2.3901 8.6469 24 6 2.7599 -2.8488 9.8133 25 6 3.3599 -4.0938 9.8428 26 6 3.3734 -4.8818 8.7071 27 6 2.7866 -4.4248 7.5418 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6442 1.2952 37 1 2.8652 -3.7948 2.5290 38 1 2.0820 -4.3877 5.0406 39 1 3.3179 -3.1080 5.0934 40 1 0.3916 -6.2653 6.1958 41 1 1.7110 -1.4160 8.6228 42 1 2.7491 -2.2335 10.7007 43 1 3.8178 -4.4512 10.7534 44 1 3.8425 -5.8543 8.7301 45 1 2.7971 -5.0404 6.6545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796679372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:09 Heat of formation + Delta-G solvation = -114.507413 kcal Electronic energy + Delta-G solvation = -28246.208992 eV Core-core repulsion = 24354.793912 eV Total energy + Delta-G solvation = -3891.415080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.03255 -39.67968 -38.29237 -37.49517 -37.07124 -36.14432 -35.27856 -32.97055 -31.38418 -30.14866 -28.93668 -28.15412 -27.84374 -24.70707 -23.17314 -22.38360 -21.73858 -21.12758 -20.50233 -19.10819 -18.53152 -18.00018 -17.74287 -17.19461 -16.89759 -16.53668 -16.14185 -15.75904 -15.52640 -15.42228 -15.16566 -14.79801 -14.66604 -14.33693 -13.92132 -13.74458 -13.55921 -13.42229 -13.29984 -13.28587 -13.21338 -13.12271 -13.08267 -12.85609 -12.74258 -12.55582 -12.32255 -12.12235 -11.87144 -11.85476 -11.80324 -11.67818 -11.32482 -11.11989 -11.03594 -10.85130 -10.41153 -9.36660 -9.09993 -7.97485 -6.12740 -0.96598 0.92107 1.02861 1.29733 1.34468 1.39908 1.45653 1.53570 2.43590 2.59411 3.09284 3.18083 3.38136 3.40244 3.62929 3.78418 3.94590 4.22376 4.27405 4.35224 4.44511 4.46516 4.52680 4.57100 4.69289 4.75485 4.79418 4.80612 4.88840 4.96310 5.10455 5.10566 5.16354 5.28869 5.31883 5.33700 5.56451 5.62961 5.69343 5.84792 5.92875 5.98073 6.12628 6.34601 6.43559 6.60776 6.78590 6.89287 7.51271 8.90986 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.003789 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.273913 B = 7387.482720 C = 8196.023339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.596 4.596 5 S 2.583 3.417 6 O -0.973 6.973 7 O -0.977 6.977 8 N -1.050 6.050 9 C 0.542 3.458 10 O -0.516 6.516 11 C -0.138 4.138 12 C 0.085 3.915 13 H 0.032 0.968 14 C -0.493 4.493 15 H 0.033 0.967 16 C 0.036 3.964 17 N -0.883 5.883 18 Si 0.917 3.083 19 H -0.293 1.293 20 H -0.277 1.277 21 H -0.280 1.280 22 C -0.050 4.050 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.082 4.082 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.141 0.859 36 H 0.170 0.830 37 H 0.443 0.557 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.262 0.738 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.124 0.876 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.648 7.349 -6.900 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.108 4.108 3 C -0.195 4.195 4 C -0.730 4.730 5 S 2.683 3.317 6 O -0.963 6.963 7 O -0.967 6.967 8 N -0.817 5.817 9 C 0.332 3.668 10 O -0.388 6.388 11 C -0.180 4.180 12 C 0.065 3.935 13 H 0.051 0.949 14 C -0.531 4.531 15 H 0.052 0.948 16 C -0.163 4.163 17 N -0.522 5.522 18 Si 0.745 3.255 19 H -0.220 1.220 20 H -0.202 1.202 21 H -0.206 1.206 22 C -0.050 4.050 23 C -0.167 4.167 24 C -0.159 4.159 25 C -0.167 4.167 26 C -0.166 4.166 27 C -0.101 4.101 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.188 0.812 37 H 0.281 0.719 38 H 0.146 0.854 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.142 0.858 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.493 7.228 -7.475 14.080 hybrid contribution -1.090 -0.507 0.308 1.241 sum 8.403 6.721 -7.167 12.929 Atomic orbital electron populations 1.22390 0.95038 1.03056 1.04177 1.21012 0.95963 0.99597 0.94215 1.21805 1.02107 0.92482 1.03144 1.30458 1.14191 1.19396 1.08948 1.05802 0.74118 0.79223 0.72576 1.93577 1.74712 1.73467 1.54581 1.93598 1.31907 1.86344 1.84887 1.54909 1.51809 1.52741 1.22222 1.21249 0.79900 0.79927 0.85757 1.90756 1.28569 1.32540 1.86929 1.22029 0.99770 1.05809 0.90390 1.17612 0.93020 0.94349 0.88480 0.94931 1.21051 0.92074 0.91479 1.48449 0.94844 1.25171 0.98907 0.96816 0.95439 1.69708 1.31750 1.00040 1.50711 0.86196 0.84211 0.77707 0.77360 1.21992 1.20233 1.20568 1.20244 0.93377 0.94871 0.96527 1.21081 1.01553 1.00189 0.93830 1.21155 1.00046 0.97099 0.97592 1.21191 1.01918 0.95043 0.98590 1.21355 1.01365 1.00026 0.93817 1.21353 0.94789 0.94780 0.99168 0.89079 0.93221 0.91923 0.88578 0.90670 0.90421 0.92309 0.84072 0.81179 0.71876 0.85366 0.87970 0.92774 0.87536 0.85161 0.84923 0.85795 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.46 8.88 71.98 0.64 -3.82 16 2 C -0.09 -1.72 2.92 -10.79 -0.03 -1.75 16 3 C -0.14 -1.96 9.19 71.98 0.66 -1.30 16 4 C -0.60 -13.11 5.33 71.98 0.38 -12.72 16 5 S 2.58 79.51 4.76 -56.49 -0.27 79.25 16 6 O -0.97 -31.00 18.08 -127.65 -2.31 -33.31 16 7 O -0.98 -40.38 14.78 -120.71 -1.78 -42.16 16 8 N -1.05 -31.79 5.60 -173.53 -0.97 -32.76 16 9 C 0.54 20.88 7.32 87.66 0.64 21.52 16 10 O -0.52 -23.29 13.08 13.38 0.18 -23.11 16 11 C -0.14 -5.36 4.07 29.85 0.12 -5.24 16 12 C 0.08 3.85 1.97 -12.29 -0.02 3.82 16 13 H 0.03 1.47 7.91 -2.39 -0.02 1.46 16 14 C -0.49 -26.22 7.27 25.60 0.19 -26.03 16 15 H 0.03 1.91 7.82 -2.91 -0.02 1.89 16 16 C 0.04 1.92 5.12 84.65 0.43 2.35 16 17 N -0.88 -43.98 7.99 21.45 0.17 -43.81 16 18 Si 0.92 44.94 29.54 68.60 2.03 46.97 16 19 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 22 C -0.05 -2.12 4.69 -19.87 -0.09 -2.21 16 23 C -0.15 -5.87 9.71 22.27 0.22 -5.65 16 24 C -0.14 -4.80 10.05 22.27 0.22 -4.57 16 25 C -0.15 -4.86 10.05 22.27 0.22 -4.64 16 26 C -0.15 -5.21 10.05 22.27 0.22 -4.98 16 27 C -0.08 -3.33 7.45 22.27 0.17 -3.17 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.43 5.61 -2.39 -0.01 1.42 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.14 3.46 7.19 -2.39 -0.02 3.44 16 36 H 0.17 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.44 10.14 8.79 -96.75 -0.85 9.29 16 38 H 0.13 5.40 4.70 -2.39 -0.01 5.39 16 39 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.26 12.79 8.31 -92.71 -0.77 12.02 16 41 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 44 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 45 H 0.13 5.45 5.18 -2.91 -0.02 5.44 16 Total: -1.00 -70.38 372.10 1.16 -69.22 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.15 Total: 28.11 kcal Atomic # 6 Polarization: -52.36 SS G_CDS: 3.97 Total: -48.39 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -0.80 Total: -76.57 kcal Atomic # 8 Polarization: -94.67 SS G_CDS: -3.92 Total: -98.58 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 79.51 SS G_CDS: -0.27 Total: 79.25 kcal Total: -70.38 1.16 -69.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796679372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.288 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds