Wall clock time and date at job start Tue Mar 31 2020 22:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47258 * 2 1 4 4 H 1.09005 * 109.46753 * 305.00077 * 3 2 1 5 5 C 1.53005 * 109.47297 * 185.00219 * 3 2 1 6 6 S 1.81393 * 109.47494 * 64.99953 * 3 2 1 7 7 O 1.42101 * 110.54360 * 291.62412 * 6 3 2 8 8 O 1.42095 * 110.54439 * 68.37710 * 6 3 2 9 9 N 1.65602 * 104.45175 * 180.02562 * 6 3 2 10 10 C 1.34775 * 120.00314 * 64.99848 * 9 6 3 11 11 O 1.21277 * 119.99591 * 0.02562 * 10 9 6 12 12 C 1.50696 * 120.00092 * 180.02562 * 10 9 6 13 13 C 1.52997 * 109.47231 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47200 * 54.99906 * 13 12 10 15 15 C 1.50697 * 109.47124 * 295.00046 * 13 12 10 16 16 H 1.07997 * 120.00382 * 325.84962 * 15 13 12 17 17 C 1.37883 * 120.00108 * 145.84772 * 15 13 12 18 18 N 1.31518 * 119.99840 * 6.11655 * 17 15 13 19 19 Si 1.86795 * 120.00333 * 186.11795 * 17 15 13 20 20 H 1.48508 * 109.47217 * 59.99955 * 19 17 15 21 21 H 1.48500 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47284 * 300.00146 * 19 17 15 23 23 C 1.50705 * 109.47405 * 174.99912 * 13 12 10 24 24 C 1.38238 * 119.99535 * 63.46294 * 23 13 12 25 25 C 1.38235 * 119.99594 * 179.81039 * 24 23 13 26 26 C 1.38238 * 120.00073 * 0.39862 * 25 24 23 27 27 C 1.38244 * 119.99901 * 359.85698 * 26 25 24 28 28 C 1.38230 * 119.99828 * 359.95535 * 27 26 25 29 29 H 1.08998 * 109.46791 * 300.00008 * 1 2 3 30 30 H 1.09001 * 109.46880 * 59.99964 * 1 2 3 31 31 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46537 * 239.99540 * 2 1 3 33 33 H 1.09001 * 109.46880 * 120.00036 * 2 1 3 34 34 H 1.08998 * 109.47089 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.46737 * 59.99235 * 5 3 2 36 36 H 1.09000 * 109.46559 * 300.00100 * 5 3 2 37 37 H 0.97006 * 119.99884 * 245.00373 * 9 6 3 38 38 H 1.08995 * 109.47216 * 299.99904 * 12 10 9 39 39 H 1.09001 * 109.47160 * 60.00024 * 12 10 9 40 40 H 0.96996 * 120.00071 * 179.97438 * 18 17 15 41 41 H 1.07990 * 120.00312 * 0.02562 * 24 23 13 42 42 H 1.07995 * 120.00219 * 180.22890 * 25 24 23 43 43 H 1.07994 * 120.00115 * 179.82777 * 26 25 24 44 44 H 1.07998 * 119.99844 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99863 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5649 1.4443 -0.1258 6 16 1.5603 2.2535 1.5499 7 8 0.1521 2.4374 1.6014 8 8 2.2660 1.6900 2.6469 9 7 2.1673 3.7886 1.4182 10 6 1.6917 4.6226 0.4723 11 8 0.8187 4.2489 -0.2821 12 6 2.2446 6.0193 0.3521 13 6 1.5388 6.7505 -0.7915 14 1 0.4611 6.7220 -0.6307 15 6 1.8696 6.0770 -2.0984 16 1 2.8438 5.6351 -2.2468 17 6 0.9285 6.0248 -3.1047 18 7 -0.2126 6.6651 -2.9717 19 14 1.2741 5.0448 -4.6569 20 1 1.5001 3.6203 -4.3029 21 1 0.1124 5.1475 -5.5762 22 1 2.4844 5.5867 -5.3253 23 6 2.0027 8.1838 -0.8335 24 6 3.3279 8.4738 -1.0995 25 6 3.7526 9.7886 -1.1419 26 6 2.8539 10.8131 -0.9102 27 6 1.5297 10.5228 -0.6389 28 6 1.1043 9.2082 -0.6004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9282 2.4719 -0.1262 35 1 3.8532 0.9568 -1.0571 36 1 3.9995 0.9052 0.7160 37 1 2.8654 4.0875 2.0218 38 1 2.0784 6.5574 1.2853 39 1 3.3139 5.9703 0.1464 40 1 -0.8745 6.6287 -3.6798 41 1 4.0305 7.6733 -1.2777 42 1 4.7871 10.0153 -1.3534 43 1 3.1862 11.8401 -0.9406 44 1 0.8277 11.3232 -0.4575 45 1 0.0699 8.9814 -0.3880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796834129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:14 Heat of formation + Delta-G solvation = -122.272374 kcal Electronic energy + Delta-G solvation = -28393.329683 eV Core-core repulsion = 24501.577889 eV Total energy + Delta-G solvation = -3891.751794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05822 -39.74245 -38.33519 -37.31309 -36.95251 -35.89568 -35.35554 -33.38626 -31.46830 -31.31500 -30.36513 -27.59928 -25.12765 -24.80794 -23.17955 -23.06375 -22.52580 -21.10606 -20.46784 -19.21291 -18.52246 -18.28159 -17.94621 -17.25133 -16.49536 -16.41618 -16.27339 -15.77444 -15.51979 -15.25939 -15.14460 -14.97059 -14.72589 -14.34165 -14.11120 -13.98137 -13.82938 -13.64276 -13.47724 -13.45243 -13.23856 -13.18240 -12.92560 -12.79649 -12.55283 -12.52542 -12.43369 -12.34207 -12.03884 -11.83832 -11.80012 -11.68037 -11.34415 -11.18389 -11.01764 -10.86485 -10.40555 -9.50824 -9.16749 -8.02557 -6.06369 -0.98295 0.81344 0.86497 1.29332 1.39070 1.42252 1.45605 1.47062 2.47321 2.53986 3.04469 3.20989 3.34948 3.38395 3.51889 3.73524 3.97229 4.16629 4.27394 4.28442 4.31608 4.38105 4.41485 4.52991 4.56787 4.62731 4.69002 4.75406 4.77078 4.91506 4.95944 4.99852 5.01507 5.11522 5.20603 5.25115 5.40176 5.53822 5.66218 5.80673 5.86676 5.87569 5.99024 6.18641 6.42816 6.49294 6.83149 7.03617 7.57907 9.06743 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.004178 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.490578 B = 6700.080408 C = 7855.961192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.572 4.572 4 H 0.132 0.868 5 C -0.143 4.143 6 S 2.592 3.408 7 O -0.977 6.977 8 O -0.963 6.963 9 N -1.046 6.046 10 C 0.533 3.467 11 O -0.502 6.502 12 C -0.122 4.122 13 C 0.075 3.925 14 H 0.026 0.974 15 C -0.491 4.491 16 H 0.061 0.939 17 C 0.024 3.976 18 N -0.916 5.916 19 Si 0.930 3.070 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.266 1.266 23 C -0.044 4.044 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.131 4.131 28 C -0.144 4.144 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.446 0.554 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.253 0.747 41 H 0.124 0.876 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.128 0.872 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.474 -5.597 7.757 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.147 4.147 3 C -0.686 4.686 4 H 0.150 0.850 5 C -0.202 4.202 6 S 2.690 3.310 7 O -0.967 6.967 8 O -0.954 6.954 9 N -0.814 5.814 10 C 0.321 3.679 11 O -0.372 6.372 12 C -0.164 4.164 13 C 0.056 3.944 14 H 0.044 0.956 15 C -0.529 4.529 16 H 0.079 0.921 17 C -0.175 4.175 18 N -0.555 5.555 19 Si 0.757 3.243 20 H -0.199 1.199 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.045 4.045 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.167 4.167 27 C -0.149 4.149 28 C -0.163 4.163 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.285 0.715 38 H 0.122 0.878 39 H 0.139 0.861 40 H 0.061 0.939 41 H 0.142 0.858 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.146 0.854 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.152 -6.135 7.851 14.225 hybrid contribution -0.276 -0.201 -1.473 1.512 sum 9.876 -6.336 6.378 13.355 Atomic orbital electron populations 1.22301 0.95834 1.04220 1.02817 1.21508 0.95720 0.90898 1.06560 1.30221 1.08582 1.09743 1.20062 0.84995 1.21761 0.87481 1.04712 1.06197 1.05759 0.73932 0.73886 0.77427 1.93580 1.31902 1.84017 1.87194 1.93568 1.74612 1.77194 1.49978 1.54886 1.51955 1.31780 1.42782 1.21173 0.80384 0.89101 0.77211 1.90910 1.28854 1.76700 1.40714 1.21916 1.03016 0.89926 1.01499 1.17719 0.95910 0.88009 0.92752 0.95592 1.21049 0.98903 1.34420 0.98480 0.92074 1.25509 0.95200 0.95911 1.00852 1.70053 1.08240 1.43285 1.33954 0.86055 0.77422 0.80110 0.80734 1.19852 1.22369 1.19133 1.20515 0.93564 0.96538 0.93859 1.21077 0.95428 0.96969 1.00737 1.21384 1.00418 0.92496 1.00178 1.21256 0.93184 0.99913 1.02324 1.21266 0.96968 0.95749 1.00900 1.21108 0.98744 0.93766 1.02657 0.93003 0.92748 0.88774 0.86873 0.88663 0.90592 0.88588 0.88920 0.71498 0.87799 0.86067 0.93855 0.85815 0.84121 0.84177 0.85442 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.92 9.60 71.98 0.69 -4.23 16 2 C -0.11 -2.28 5.40 30.59 0.17 -2.12 16 3 C -0.57 -14.59 2.73 30.59 0.08 -14.51 16 4 H 0.13 4.08 7.19 -2.39 -0.02 4.07 16 5 C -0.14 -2.67 9.06 71.98 0.65 -2.02 16 6 S 2.59 78.14 4.20 -56.49 -0.24 77.90 16 7 O -0.98 -38.80 14.78 -120.71 -1.78 -40.59 16 8 O -0.96 -28.64 17.96 -127.65 -2.29 -30.93 16 9 N -1.05 -28.55 5.29 -173.54 -0.92 -29.47 16 10 C 0.53 19.36 7.32 87.66 0.64 20.00 16 11 O -0.50 -23.55 13.09 13.39 0.18 -23.38 16 12 C -0.12 -4.13 4.95 29.85 0.15 -3.98 16 13 C 0.08 3.44 1.67 -12.29 -0.02 3.42 16 14 H 0.03 1.43 6.98 -2.39 -0.02 1.41 16 15 C -0.49 -24.68 6.37 25.60 0.16 -24.51 16 16 H 0.06 2.89 7.82 -2.91 -0.02 2.87 16 17 C 0.02 1.35 5.45 84.66 0.46 1.81 16 18 N -0.92 -54.48 12.87 21.45 0.28 -54.20 16 19 Si 0.93 43.86 29.54 68.60 2.03 45.88 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.04 -1.84 4.77 -19.86 -0.09 -1.93 16 24 C -0.12 -4.41 8.86 22.27 0.20 -4.21 16 25 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 26 C -0.15 -4.43 10.05 22.27 0.22 -4.20 16 27 C -0.13 -4.46 10.05 22.27 0.22 -4.23 16 28 C -0.14 -5.97 9.67 22.27 0.22 -5.75 16 29 H 0.05 1.53 5.61 -2.39 -0.01 1.52 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.34 7.91 -2.39 -0.02 1.32 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.37 8.11 -2.39 -0.02 1.35 16 37 H 0.45 8.04 8.79 -96.74 -0.85 7.19 16 38 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.12 3.29 7.78 -2.39 -0.02 3.27 16 40 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.12 4.04 7.76 -2.92 -0.02 4.02 16 42 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.09 4.07 7.95 -2.91 -0.02 4.05 16 Total: -1.00 -76.62 382.28 1.36 -75.26 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.14 Total: 29.60 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 3.97 Total: -50.09 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -0.64 Total: -83.67 kcal Atomic # 8 Polarization: -91.00 SS G_CDS: -3.90 Total: -94.90 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 78.14 SS G_CDS: -0.24 Total: 77.90 kcal Total: -76.62 1.36 -75.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796834129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.014 kcal (2) G-P(sol) polarization free energy of solvation -76.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds