Wall clock time and date at job start Tue Mar 31 2020 22:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47337 * 2 1 4 4 H 1.08994 * 109.47395 * 55.00288 * 3 2 1 5 5 C 1.53003 * 109.47267 * 175.00330 * 3 2 1 6 6 S 1.81405 * 109.47052 * 294.99858 * 3 2 1 7 7 O 1.42101 * 110.53796 * 74.15526 * 6 3 2 8 8 O 1.42093 * 110.54357 * 297.40491 * 6 3 2 9 9 N 1.65597 * 104.44829 * 185.77561 * 6 3 2 10 10 C 1.34780 * 120.00269 * 296.07874 * 9 6 3 11 11 O 1.21279 * 119.99651 * 355.12915 * 10 9 6 12 12 C 1.50699 * 119.99786 * 175.13328 * 10 9 6 13 13 C 1.52999 * 109.46667 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47394 * 54.99972 * 13 12 10 15 15 C 1.50708 * 109.47489 * 294.99699 * 13 12 10 16 16 H 1.07997 * 119.99299 * 334.47520 * 15 13 12 17 17 C 1.37869 * 120.00183 * 154.46953 * 15 13 12 18 18 N 1.31520 * 120.00145 * 5.02042 * 17 15 13 19 19 Si 1.86801 * 120.00016 * 185.03012 * 17 15 13 20 20 H 1.48499 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47247 * 119.99720 * 19 17 15 22 22 H 1.48498 * 109.46866 * 239.99560 * 19 17 15 23 23 C 1.50703 * 109.47235 * 175.00074 * 13 12 10 24 24 C 1.38239 * 120.00096 * 55.48477 * 23 13 12 25 25 C 1.38231 * 120.00238 * 179.81369 * 24 23 13 26 26 C 1.38239 * 119.99634 * 0.39792 * 25 24 23 27 27 C 1.38230 * 120.00287 * 359.85592 * 26 25 24 28 28 C 1.38233 * 120.00091 * 235.76809 * 23 13 12 29 29 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46848 * 299.99864 * 1 2 3 31 31 H 1.08995 * 109.47314 * 59.99709 * 1 2 3 32 32 H 1.09003 * 109.47022 * 239.99473 * 2 1 3 33 33 H 1.09009 * 109.47108 * 120.00255 * 2 1 3 34 34 H 1.09001 * 109.47506 * 64.96516 * 5 3 2 35 35 H 1.08998 * 109.47190 * 184.97056 * 5 3 2 36 36 H 1.09002 * 109.46549 * 304.96570 * 5 3 2 37 37 H 0.96998 * 119.99645 * 116.35606 * 9 6 3 38 38 H 1.08993 * 109.47211 * 299.99696 * 12 10 9 39 39 H 1.08997 * 109.47362 * 60.00225 * 12 10 9 40 40 H 0.96998 * 120.00053 * 179.97438 * 18 17 15 41 41 H 1.08000 * 119.99503 * 0.02562 * 24 23 13 42 42 H 1.08003 * 120.00393 * 180.23482 * 25 24 23 43 43 H 1.08004 * 119.99692 * 179.83624 * 26 25 24 44 44 H 1.08003 * 120.00198 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00185 * 359.96779 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1256 6 16 1.5601 2.2534 -1.5501 7 8 0.1720 2.5572 -1.5449 8 8 2.1638 1.6038 -2.6604 9 7 2.3021 3.7326 -1.4894 10 6 1.9593 4.6198 -0.5344 11 8 1.0474 4.3709 0.2253 12 6 2.7093 5.9211 -0.4107 13 6 2.1246 6.7390 0.7426 14 1 2.1370 6.1419 1.6543 15 6 0.7055 7.1263 0.4150 16 1 0.3907 7.2022 -0.6153 17 6 -0.1907 7.3837 1.4305 18 7 0.2160 7.3881 2.6812 19 14 -1.9830 7.7259 1.0301 20 1 -2.1823 7.6635 -0.4402 21 1 -2.8406 6.7089 1.6900 22 1 -2.3506 9.0779 1.5221 23 6 2.9507 7.9830 0.9456 24 6 3.1603 8.8531 -0.1080 25 6 3.9147 9.9961 0.0792 26 6 4.4665 10.2649 1.3178 27 6 4.2613 9.3922 2.3700 28 6 3.5037 8.2510 2.1838 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0030 0.9829 -0.7595 35 1 3.9209 2.4706 0.2145 36 1 3.8570 0.8804 1.0116 37 1 2.9805 3.9621 -2.1435 38 1 3.7618 5.7166 -0.2146 39 1 2.6154 6.4843 -1.3392 40 1 -0.4145 7.5696 3.3956 41 1 2.7316 8.6415 -1.0764 42 1 4.0753 10.6779 -0.7430 43 1 5.0582 11.1567 1.4634 44 1 4.6928 9.6020 3.3376 45 1 3.3434 7.5692 3.0059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796834133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:19 Heat of formation + Delta-G solvation = -100.483904 kcal Electronic energy + Delta-G solvation = -28274.313571 eV Core-core repulsion = 24383.506596 eV Total energy + Delta-G solvation = -3890.806975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.62137 -38.27790 -37.06910 -36.18104 -35.88114 -34.27552 -33.95757 -31.52727 -30.45670 -30.01459 -28.92827 -25.80047 -24.27407 -23.13109 -22.13631 -21.74733 -21.13015 -19.56477 -19.19688 -17.96742 -17.09707 -16.83115 -16.51210 -15.82267 -15.13287 -15.05516 -14.56763 -14.30808 -14.18757 -14.09267 -13.97240 -13.81077 -13.55667 -13.14644 -12.72051 -12.62704 -12.44362 -12.28568 -12.08703 -12.00000 -11.94523 -11.90246 -11.65721 -11.53256 -11.43206 -11.16836 -10.97070 -10.80714 -10.58425 -10.56577 -10.27212 -10.11133 -10.08929 -9.59534 -9.51586 -9.11446 -8.41924 -8.04817 -7.63026 -6.00608 -4.01394 0.17049 2.28207 2.33238 2.53805 2.80504 3.36672 3.44660 3.49141 3.69687 4.13986 4.28536 4.48955 4.56144 4.73399 4.81584 4.97429 5.10761 5.17419 5.28447 5.30372 5.44043 5.50798 5.58106 5.65414 5.68561 5.74978 5.78975 5.81059 5.87418 5.91639 5.99465 6.13863 6.22167 6.39427 6.45569 6.62933 6.87264 6.96662 7.06598 7.30881 7.35815 7.49084 7.80794 7.91505 7.99131 8.17074 8.27987 8.97352 9.61952 11.08329 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.004045 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.557397 B = 6920.651036 C = 8074.516635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.106 4.106 3 C -0.585 4.585 4 H 0.151 0.849 5 C -0.139 4.139 6 S 2.591 3.409 7 O -0.926 6.926 8 O -0.959 6.959 9 N -1.063 6.063 10 C 0.527 3.473 11 O -0.451 6.451 12 C -0.126 4.126 13 C 0.080 3.920 14 H 0.067 0.933 15 C -0.496 4.496 16 H 0.055 0.945 17 C 0.076 3.924 18 N -0.880 5.880 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.287 1.287 23 C -0.020 4.020 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.155 4.155 27 C -0.129 4.129 28 C -0.107 4.107 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.427 0.573 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.259 0.741 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.063 -9.215 -4.621 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.145 4.145 3 C -0.696 4.696 4 H 0.169 0.831 5 C -0.197 4.197 6 S 2.686 3.314 7 O -0.916 6.916 8 O -0.950 6.950 9 N -0.830 5.830 10 C 0.314 3.686 11 O -0.317 6.317 12 C -0.168 4.168 13 C 0.061 3.939 14 H 0.085 0.915 15 C -0.534 4.534 16 H 0.073 0.927 17 C -0.127 4.127 18 N -0.517 5.517 19 Si 0.715 3.285 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.213 1.213 23 C -0.020 4.020 24 C -0.139 4.139 25 C -0.150 4.150 26 C -0.173 4.173 27 C -0.147 4.147 28 C -0.126 4.126 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.734 -9.669 -4.514 13.789 hybrid contribution -0.493 0.596 0.174 0.793 sum 8.241 -9.073 -4.340 13.003 Atomic orbital electron populations 1.22190 0.94530 1.03176 1.04275 1.21364 0.96709 0.91848 1.04532 1.30345 1.06499 1.09271 1.23488 0.83118 1.21615 0.89848 1.03880 1.04376 1.05898 0.74947 0.73929 0.76673 1.93659 1.30134 1.81539 1.86297 1.93584 1.78443 1.74773 1.48157 1.55248 1.54126 1.33308 1.40346 1.21081 0.83369 0.86023 0.78113 1.90911 1.25229 1.75456 1.40123 1.21977 0.98438 0.92450 1.03971 1.17857 0.93031 0.89089 0.93916 0.91478 1.20787 0.92805 1.47101 0.92671 0.92710 1.24816 0.98377 0.94505 0.95034 1.69921 1.34584 1.48378 0.98835 0.86610 0.85719 0.77401 0.78736 1.19741 1.20878 1.21345 1.20582 0.90863 0.98421 0.92174 1.20924 0.98943 0.94735 0.99335 1.20944 0.99661 0.97627 0.96760 1.20795 1.02942 0.99672 0.93926 1.20997 1.00231 0.95613 0.97875 1.21041 0.96732 0.97307 0.97479 0.91226 0.90916 0.91560 0.90538 0.89297 0.90957 0.90977 0.90143 0.73744 0.90232 0.89210 0.93087 0.87036 0.87709 0.87871 0.87696 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 9.62 37.16 0.36 -1.78 16 2 C -0.11 -1.09 5.40 -26.74 -0.14 -1.24 16 3 C -0.59 -7.03 2.70 -26.73 -0.07 -7.10 16 4 H 0.15 2.00 7.43 -51.93 -0.39 1.61 16 5 C -0.14 -1.30 9.01 37.16 0.33 -0.97 16 6 S 2.59 38.56 4.04 -107.50 -0.43 38.12 16 7 O -0.93 -17.93 15.17 -64.97 -0.99 -18.91 16 8 O -0.96 -14.67 18.06 -57.54 -1.04 -15.71 16 9 N -1.06 -14.66 5.14 31.22 0.16 -14.50 16 10 C 0.53 9.37 7.30 -10.98 -0.08 9.29 16 11 O -0.45 -10.01 13.25 -12.18 -0.16 -10.17 16 12 C -0.13 -2.16 4.84 -27.88 -0.14 -2.29 16 13 C 0.08 1.78 1.53 -92.92 -0.14 1.64 16 14 H 0.07 1.67 7.23 -51.93 -0.38 1.30 16 15 C -0.50 -12.87 6.62 -34.44 -0.23 -13.10 16 16 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 17 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 18 N -0.88 -24.73 13.01 55.43 0.72 -24.01 16 19 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 20 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C -0.02 -0.41 4.77 -104.62 -0.50 -0.91 16 24 C -0.12 -2.31 8.94 -39.58 -0.35 -2.67 16 25 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 26 C -0.16 -2.62 10.05 -39.58 -0.40 -3.02 16 27 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 28 C -0.11 -2.19 9.67 -39.58 -0.38 -2.57 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.07 0.88 5.88 -51.93 -0.31 0.58 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.43 4.18 8.79 -34.46 -0.30 3.88 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.40 7.34 -51.93 -0.38 1.02 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.11 2.00 7.38 -52.49 -0.39 1.61 16 42 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.10 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 45 H 0.12 2.41 7.95 -52.49 -0.42 2.00 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -34.20 382.72 -10.37 -44.57 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.74 Total: 5.79 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -2.64 Total: -28.11 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.88 Total: -38.51 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -2.19 Total: -44.80 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 38.56 SS G_CDS: -0.43 Total: 38.12 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.20 -10.37 -44.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796834133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.913 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds