Wall clock time and date at job start Tue Mar 31 2020 22:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47337 * 2 1 4 4 H 1.08994 * 109.47395 * 55.00288 * 3 2 1 5 5 C 1.53003 * 109.47267 * 175.00330 * 3 2 1 6 6 S 1.81405 * 109.47052 * 294.99858 * 3 2 1 7 7 O 1.42101 * 110.53796 * 74.15526 * 6 3 2 8 8 O 1.42093 * 110.54357 * 297.40491 * 6 3 2 9 9 N 1.65597 * 104.44829 * 185.77561 * 6 3 2 10 10 C 1.34780 * 120.00269 * 296.07874 * 9 6 3 11 11 O 1.21279 * 119.99651 * 355.12915 * 10 9 6 12 12 C 1.50699 * 119.99786 * 175.13328 * 10 9 6 13 13 C 1.52999 * 109.46667 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47394 * 54.99972 * 13 12 10 15 15 C 1.50708 * 109.47489 * 294.99699 * 13 12 10 16 16 H 1.07997 * 119.99299 * 334.47520 * 15 13 12 17 17 C 1.37869 * 120.00183 * 154.46953 * 15 13 12 18 18 N 1.31520 * 120.00145 * 5.02042 * 17 15 13 19 19 Si 1.86801 * 120.00016 * 185.03012 * 17 15 13 20 20 H 1.48499 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47247 * 119.99720 * 19 17 15 22 22 H 1.48498 * 109.46866 * 239.99560 * 19 17 15 23 23 C 1.50703 * 109.47235 * 175.00074 * 13 12 10 24 24 C 1.38239 * 120.00096 * 55.48477 * 23 13 12 25 25 C 1.38231 * 120.00238 * 179.81369 * 24 23 13 26 26 C 1.38239 * 119.99634 * 0.39792 * 25 24 23 27 27 C 1.38230 * 120.00287 * 359.85592 * 26 25 24 28 28 C 1.38233 * 120.00091 * 235.76809 * 23 13 12 29 29 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46848 * 299.99864 * 1 2 3 31 31 H 1.08995 * 109.47314 * 59.99709 * 1 2 3 32 32 H 1.09003 * 109.47022 * 239.99473 * 2 1 3 33 33 H 1.09009 * 109.47108 * 120.00255 * 2 1 3 34 34 H 1.09001 * 109.47506 * 64.96516 * 5 3 2 35 35 H 1.08998 * 109.47190 * 184.97056 * 5 3 2 36 36 H 1.09002 * 109.46549 * 304.96570 * 5 3 2 37 37 H 0.96998 * 119.99645 * 116.35606 * 9 6 3 38 38 H 1.08993 * 109.47211 * 299.99696 * 12 10 9 39 39 H 1.08997 * 109.47362 * 60.00225 * 12 10 9 40 40 H 0.96998 * 120.00053 * 179.97438 * 18 17 15 41 41 H 1.08000 * 119.99503 * 0.02562 * 24 23 13 42 42 H 1.08003 * 120.00393 * 180.23482 * 25 24 23 43 43 H 1.08004 * 119.99692 * 179.83624 * 26 25 24 44 44 H 1.08003 * 120.00198 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00185 * 359.96779 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1256 6 16 1.5601 2.2534 -1.5501 7 8 0.1720 2.5572 -1.5449 8 8 2.1638 1.6038 -2.6604 9 7 2.3021 3.7326 -1.4894 10 6 1.9593 4.6198 -0.5344 11 8 1.0474 4.3709 0.2253 12 6 2.7093 5.9211 -0.4107 13 6 2.1246 6.7390 0.7426 14 1 2.1370 6.1419 1.6543 15 6 0.7055 7.1263 0.4150 16 1 0.3907 7.2022 -0.6153 17 6 -0.1907 7.3837 1.4305 18 7 0.2160 7.3881 2.6812 19 14 -1.9830 7.7259 1.0301 20 1 -2.1823 7.6635 -0.4402 21 1 -2.8406 6.7089 1.6900 22 1 -2.3506 9.0779 1.5221 23 6 2.9507 7.9830 0.9456 24 6 3.1603 8.8531 -0.1080 25 6 3.9147 9.9961 0.0792 26 6 4.4665 10.2649 1.3178 27 6 4.2613 9.3922 2.3700 28 6 3.5037 8.2510 2.1838 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0030 0.9829 -0.7595 35 1 3.9209 2.4706 0.2145 36 1 3.8570 0.8804 1.0116 37 1 2.9805 3.9621 -2.1435 38 1 3.7618 5.7166 -0.2146 39 1 2.6154 6.4843 -1.3392 40 1 -0.4145 7.5696 3.3956 41 1 2.7316 8.6415 -1.0764 42 1 4.0753 10.6779 -0.7430 43 1 5.0582 11.1567 1.4634 44 1 4.6928 9.6020 3.3376 45 1 3.3434 7.5692 3.0059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796834133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:18 Heat of formation + Delta-G solvation = -122.818472 kcal Electronic energy + Delta-G solvation = -28275.282071 eV Core-core repulsion = 24383.506596 eV Total energy + Delta-G solvation = -3891.775474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.07946 -39.72660 -38.32527 -37.29255 -36.96020 -35.91242 -35.37718 -33.40141 -31.44133 -31.32445 -30.34422 -27.62780 -25.13207 -24.79699 -23.18037 -23.07684 -22.50313 -21.09382 -20.45265 -19.19438 -18.60102 -18.26125 -17.97344 -17.21492 -16.54337 -16.38120 -16.34966 -15.68234 -15.45645 -15.40709 -15.09300 -14.96385 -14.72682 -14.38404 -14.11624 -13.96489 -13.81843 -13.63275 -13.45896 -13.41569 -13.22424 -13.17403 -12.96278 -12.90881 -12.56543 -12.48035 -12.44293 -12.34183 -12.03075 -11.85677 -11.80862 -11.65410 -11.34909 -11.19899 -11.08622 -10.86229 -10.43942 -9.47613 -9.14918 -8.06242 -6.08499 -0.98974 0.84320 0.89838 1.26981 1.33413 1.38960 1.45466 1.46013 2.44790 2.54457 3.05514 3.21203 3.34440 3.37990 3.50371 3.72070 3.96935 4.15372 4.27033 4.28005 4.30390 4.39767 4.43088 4.52862 4.58171 4.62249 4.68909 4.75761 4.76953 4.92150 4.97100 4.98489 5.02526 5.12362 5.20016 5.22840 5.42613 5.55154 5.64929 5.80320 5.86379 5.90068 6.00590 6.20653 6.41144 6.51064 6.80835 6.98641 7.54708 9.01368 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.004045 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.557397 B = 6920.651036 C = 8074.516635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.567 4.567 4 H 0.136 0.864 5 C -0.145 4.145 6 S 2.585 3.415 7 O -0.980 6.980 8 O -0.965 6.965 9 N -1.046 6.046 10 C 0.533 3.467 11 O -0.503 6.503 12 C -0.124 4.124 13 C 0.081 3.919 14 H 0.029 0.971 15 C -0.490 4.490 16 H 0.046 0.954 17 C 0.028 3.972 18 N -0.907 5.907 19 Si 0.923 3.077 20 H -0.272 1.272 21 H -0.292 1.292 22 H -0.280 1.280 23 C -0.040 4.040 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.149 4.149 27 C -0.133 4.133 28 C -0.130 4.130 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.446 0.554 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.254 0.746 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.127 0.873 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.856 -8.879 -5.631 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.147 4.147 3 C -0.681 4.681 4 H 0.154 0.846 5 C -0.203 4.203 6 S 2.684 3.316 7 O -0.970 6.970 8 O -0.955 6.955 9 N -0.815 5.815 10 C 0.321 3.679 11 O -0.374 6.374 12 C -0.165 4.165 13 C 0.062 3.938 14 H 0.048 0.952 15 C -0.528 4.528 16 H 0.064 0.936 17 C -0.172 4.172 18 N -0.546 5.546 19 Si 0.751 3.249 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.206 1.206 23 C -0.041 4.041 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.167 4.167 27 C -0.151 4.151 28 C -0.148 4.148 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.285 0.715 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.064 0.936 41 H 0.138 0.862 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.145 0.855 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.550 -9.307 -5.608 15.858 hybrid contribution -1.249 0.455 0.466 1.409 sum 10.301 -8.852 -5.142 14.523 Atomic orbital electron populations 1.22273 0.95951 1.04333 1.02487 1.21533 0.95565 0.90829 1.06799 1.30194 1.08711 1.09686 1.19545 0.84635 1.21789 0.87297 1.04861 1.06306 1.05944 0.73886 0.73974 0.77809 1.93599 1.33451 1.82437 1.87517 1.93567 1.78050 1.74514 1.49385 1.54866 1.54058 1.32719 1.39808 1.21191 0.82465 0.86423 0.77782 1.90903 1.27549 1.76563 1.42345 1.21935 1.00186 0.91573 1.02830 1.17666 0.91934 0.90074 0.94120 0.95222 1.21096 0.94965 1.44911 0.91818 0.93590 1.25365 1.00730 0.95687 0.95400 1.70017 1.34819 1.50619 0.99147 0.86045 0.83371 0.77184 0.78290 1.19704 1.21892 1.20624 1.20420 0.92216 0.98264 0.93207 1.21072 0.99520 0.95243 0.99086 1.21337 0.98164 0.97107 0.98018 1.21232 1.02146 1.00164 0.93178 1.21274 0.99467 0.94760 0.99550 1.21032 0.98438 0.98447 0.96877 0.88610 0.92209 0.93939 0.88792 0.86331 0.89169 0.90660 0.87964 0.71500 0.86201 0.87216 0.93645 0.86246 0.84367 0.84315 0.85481 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.47 9.62 71.98 0.69 -3.78 16 2 C -0.11 -2.05 5.40 30.59 0.17 -1.88 16 3 C -0.57 -13.13 2.70 30.59 0.08 -13.05 16 4 H 0.14 3.69 7.43 -2.39 -0.02 3.67 16 5 C -0.14 -2.33 9.01 71.98 0.65 -1.68 16 6 S 2.59 77.05 4.04 -56.49 -0.23 76.82 16 7 O -0.98 -39.77 15.17 -120.54 -1.83 -41.59 16 8 O -0.96 -28.60 18.06 -127.65 -2.31 -30.91 16 9 N -1.05 -28.22 5.14 -173.53 -0.89 -29.11 16 10 C 0.53 19.06 7.30 87.66 0.64 19.70 16 11 O -0.50 -23.33 13.25 13.93 0.18 -23.15 16 12 C -0.12 -4.13 4.84 29.85 0.14 -3.98 16 13 C 0.08 3.68 1.53 -12.28 -0.02 3.66 16 14 H 0.03 1.55 7.23 -2.39 -0.02 1.53 16 15 C -0.49 -26.03 6.62 25.60 0.17 -25.87 16 16 H 0.05 2.46 7.81 -2.91 -0.02 2.43 16 17 C 0.03 1.57 5.45 84.65 0.46 2.03 16 18 N -0.91 -53.08 13.01 21.45 0.28 -52.80 16 19 Si 0.92 46.71 29.54 68.60 2.03 48.74 16 20 H -0.27 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 22 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 23 C -0.04 -1.68 4.77 -19.86 -0.09 -1.77 16 24 C -0.13 -4.74 8.94 22.27 0.20 -4.54 16 25 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 26 C -0.15 -4.49 10.05 22.27 0.22 -4.26 16 27 C -0.13 -4.51 10.05 22.27 0.22 -4.28 16 28 C -0.13 -5.30 9.67 22.27 0.22 -5.09 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.04 1.18 5.88 -2.39 -0.01 1.17 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.09 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.07 1.17 7.89 -2.39 -0.02 1.16 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.45 7.98 8.79 -96.75 -0.85 7.13 16 38 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.11 3.23 7.34 -2.39 -0.02 3.22 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.12 4.03 7.38 -2.91 -0.02 4.01 16 42 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 44 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 45 H 0.09 4.16 7.95 -2.91 -0.02 4.13 16 Total: -1.00 -78.32 382.72 1.35 -76.97 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.14 Total: 23.56 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 3.98 Total: -48.53 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -0.61 Total: -81.91 kcal Atomic # 8 Polarization: -91.71 SS G_CDS: -3.95 Total: -95.65 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 77.05 SS G_CDS: -0.23 Total: 76.82 kcal Total: -78.32 1.35 -76.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796834133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.851 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds