Wall clock time and date at job start Tue Mar 31 2020 22:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47302 * 2 1 4 4 H 1.09010 * 109.46963 * 53.05186 * 3 2 1 5 5 C 1.53000 * 109.47506 * 173.04796 * 3 2 1 6 6 S 1.81398 * 109.47373 * 293.05529 * 3 2 1 7 7 O 1.42097 * 110.53998 * 314.79752 * 6 3 2 8 8 O 1.42106 * 110.54066 * 178.05158 * 6 3 2 9 9 N 1.65593 * 104.45159 * 66.42649 * 6 3 2 10 10 C 1.34780 * 120.00211 * 64.16806 * 9 6 3 11 11 O 1.21277 * 119.99723 * 4.70868 * 10 9 6 12 12 C 1.50701 * 119.99907 * 184.71121 * 10 9 6 13 13 C 1.53001 * 109.46936 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46813 * 305.65760 * 13 12 10 15 15 C 1.50696 * 109.47255 * 65.65437 * 13 12 10 16 16 H 1.07999 * 119.99938 * 33.59547 * 15 13 12 17 17 C 1.37876 * 120.00395 * 213.59426 * 15 13 12 18 18 N 1.31519 * 119.99574 * 3.90986 * 17 15 13 19 19 Si 1.86794 * 120.00462 * 184.18519 * 17 15 13 20 20 H 1.48497 * 109.47248 * 179.72554 * 19 17 15 21 21 H 1.48508 * 109.47069 * 299.72423 * 19 17 15 22 22 H 1.48499 * 109.47247 * 59.72246 * 19 17 15 23 23 C 1.50698 * 109.47170 * 185.65716 * 13 12 10 24 24 C 1.38235 * 119.99940 * 294.91109 * 23 13 12 25 25 C 1.38239 * 119.99967 * 179.78791 * 24 23 13 26 26 C 1.38234 * 119.99673 * 0.43967 * 25 24 23 27 27 C 1.38224 * 120.00217 * 359.81085 * 26 25 24 28 28 C 1.38231 * 120.00083 * 115.17857 * 23 13 12 29 29 H 1.08997 * 109.47392 * 308.10220 * 1 2 3 30 30 H 1.09007 * 109.47000 * 68.09745 * 1 2 3 31 31 H 1.08999 * 109.47235 * 188.09187 * 1 2 3 32 32 H 1.09001 * 109.47241 * 240.00598 * 2 1 3 33 33 H 1.08997 * 109.47444 * 120.00453 * 2 1 3 34 34 H 1.08999 * 109.47758 * 184.94402 * 5 3 2 35 35 H 1.09002 * 109.47297 * 304.95077 * 5 3 2 36 36 H 1.09002 * 109.46896 * 64.94612 * 5 3 2 37 37 H 0.97004 * 119.99926 * 244.16690 * 9 6 3 38 38 H 1.08996 * 109.47166 * 59.99836 * 12 10 9 39 39 H 1.08998 * 109.47205 * 299.99920 * 12 10 9 40 40 H 0.96999 * 119.99862 * 354.80433 * 18 17 15 41 41 H 1.08001 * 120.00070 * 359.97438 * 24 23 13 42 42 H 1.08001 * 119.99709 * 180.26727 * 25 24 23 43 43 H 1.08003 * 119.99247 * 179.83799 * 26 25 24 44 44 H 1.08009 * 120.00194 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.00165 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5787 1.9909 0.8214 5 6 3.5600 1.4460 0.1746 6 16 1.6102 2.2358 -1.5736 7 8 1.9011 1.3717 -2.6635 8 8 2.0345 3.5921 -1.5805 9 7 -0.0432 2.3253 -1.5533 10 6 -0.6659 3.0819 -0.6278 11 8 -0.0153 3.7640 0.1353 12 6 -2.1704 3.0803 -0.5414 13 6 -2.6176 4.0152 0.5842 14 1 -2.1195 3.7317 1.5114 15 6 -2.2539 5.4347 0.2324 16 1 -2.2743 5.7579 -0.7979 17 6 -1.8952 6.3209 1.2259 18 7 -1.7957 5.9082 2.4707 19 14 -1.5579 8.1093 0.8051 20 1 -1.2003 8.8499 2.0416 21 1 -0.4329 8.1869 -0.1612 22 1 -2.7724 8.7131 0.2002 23 6 -4.1101 3.9085 0.7627 24 6 -4.9583 4.3194 -0.2486 25 6 -6.3274 4.2174 -0.0865 26 6 -6.8483 3.7131 1.0904 27 6 -6.0003 3.3071 2.1036 28 6 -4.6312 3.4050 1.9399 29 1 -0.3634 0.6341 0.8086 30 1 -0.3633 0.3834 -0.9536 31 1 -0.3633 -1.0174 0.1447 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9133 2.4734 0.2627 35 1 3.8235 0.8926 1.0759 36 1 4.0262 0.9745 -0.6905 37 1 -0.5637 1.8331 -2.2074 38 1 -2.5213 2.0693 -0.3345 39 1 -2.5891 3.4237 -1.4874 40 1 -2.0471 5.0004 2.7022 41 1 -4.5513 4.7172 -1.1664 42 1 -6.9899 4.5344 -0.8784 43 1 -7.9180 3.6359 1.2179 44 1 -6.4074 2.9126 3.0230 45 1 -3.9686 3.0876 2.7316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796834138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:21 Heat of formation + Delta-G solvation = -118.616143 kcal Electronic energy + Delta-G solvation = -28629.399820 eV Core-core repulsion = 24737.806572 eV Total energy + Delta-G solvation = -3891.593248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21086 -39.88480 -38.46212 -37.27831 -36.97546 -36.19724 -35.49852 -33.27749 -31.58308 -31.27374 -30.49550 -27.16477 -25.26002 -24.89671 -23.24257 -23.03964 -22.61152 -21.45678 -20.53720 -19.35142 -18.73866 -18.34732 -18.01583 -17.31809 -16.72524 -16.49429 -15.81117 -15.67949 -15.61905 -15.39217 -15.26973 -14.93452 -14.77369 -14.65969 -14.14717 -14.01327 -13.96098 -13.79663 -13.48703 -13.42226 -13.27642 -13.20181 -13.08462 -12.75993 -12.65417 -12.48040 -12.35937 -12.08022 -12.03648 -11.93585 -11.92018 -11.75481 -11.44691 -11.15564 -11.01741 -10.59593 -10.35620 -9.61750 -9.26592 -8.43774 -6.10427 -1.03359 0.70090 0.74845 1.21718 1.40678 1.48704 1.57379 1.72296 2.50597 2.60611 2.98447 3.11499 3.32452 3.40511 3.46512 3.66394 3.97418 4.06445 4.15172 4.27763 4.28143 4.30845 4.31732 4.45021 4.48777 4.50319 4.61842 4.63343 4.73149 4.84539 4.87703 4.98586 5.01546 5.02638 5.06700 5.24065 5.27311 5.40953 5.44641 5.77421 5.77904 5.85666 5.95563 6.25151 6.32435 6.40018 6.74891 6.82500 7.63798 8.96753 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011771 B = 0.004383 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.182554 B = 6387.370217 C = 7668.805247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 C -0.565 4.565 4 H 0.133 0.867 5 C -0.148 4.148 6 S 2.589 3.411 7 O -0.961 6.961 8 O -0.986 6.986 9 N -1.045 6.045 10 C 0.536 3.464 11 O -0.503 6.503 12 C -0.117 4.117 13 C 0.067 3.933 14 H 0.025 0.975 15 C -0.568 4.568 16 H 0.039 0.961 17 C -0.017 4.017 18 N -0.936 5.936 19 Si 1.087 2.913 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.056 4.056 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.150 4.150 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.445 0.555 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.260 0.740 41 H 0.114 0.886 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.135 0.865 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 -15.894 -5.861 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.145 4.145 3 C -0.680 4.680 4 H 0.151 0.849 5 C -0.207 4.207 6 S 2.687 3.313 7 O -0.951 6.951 8 O -0.976 6.976 9 N -0.814 5.814 10 C 0.324 3.676 11 O -0.373 6.373 12 C -0.159 4.159 13 C 0.047 3.953 14 H 0.043 0.957 15 C -0.606 4.606 16 H 0.058 0.942 17 C -0.216 4.216 18 N -0.574 5.574 19 Si 0.913 3.087 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.057 4.057 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.168 4.168 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.285 0.715 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.416 -13.600 -5.369 14.627 hybrid contribution -0.558 -1.284 -0.152 1.408 sum -0.142 -14.883 -5.521 15.875 Atomic orbital electron populations 1.22402 0.95019 1.04749 1.02716 1.21506 0.96542 0.89957 1.06452 1.30177 1.07791 1.10366 1.19656 0.84869 1.21776 0.88282 1.04298 1.06364 1.05838 0.73149 0.74329 0.77937 1.93569 1.82623 1.68373 1.50545 1.93598 1.80484 1.35953 1.87566 1.55029 1.28967 1.56165 1.41202 1.21077 0.93070 0.75636 0.77851 1.90925 1.67825 1.37193 1.41371 1.21830 0.88679 1.02601 1.02757 1.17796 0.88498 0.94432 0.94549 0.95661 1.21844 1.48242 0.96261 0.94217 0.94241 1.26531 0.93784 1.07644 0.93688 1.70855 1.46511 1.20119 1.19957 0.83323 0.77074 0.72937 0.75405 1.21358 1.21524 1.19173 1.20555 0.97169 0.94099 0.93831 1.21031 0.93599 1.00046 0.99379 1.21396 0.94758 0.99633 0.98555 1.21304 1.00402 1.00778 0.93718 1.21300 0.92804 1.00422 0.99758 1.21147 0.96015 1.02246 0.97390 0.93112 0.91534 0.88724 0.88477 0.87415 0.91722 0.87084 0.89625 0.71450 0.86623 0.87617 0.92869 0.86805 0.84239 0.83819 0.84748 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 8.73 71.98 0.63 -2.70 16 2 C -0.11 -1.82 5.33 30.59 0.16 -1.65 16 3 C -0.57 -13.60 2.79 30.59 0.09 -13.52 16 4 H 0.13 3.76 7.18 -2.39 -0.02 3.75 16 5 C -0.15 -2.96 9.20 71.98 0.66 -2.30 16 6 S 2.59 79.08 4.43 -56.49 -0.25 78.83 16 7 O -0.96 -28.66 17.57 -127.65 -2.24 -30.90 16 8 O -0.99 -41.70 16.98 -120.51 -2.05 -43.75 16 9 N -1.04 -29.17 3.23 -173.53 -0.56 -29.73 16 10 C 0.54 19.74 6.66 87.66 0.58 20.32 16 11 O -0.50 -24.16 13.14 14.03 0.18 -23.98 16 12 C -0.12 -4.02 4.96 29.85 0.15 -3.88 16 13 C 0.07 3.02 1.57 -12.29 -0.02 3.01 16 14 H 0.03 1.30 5.80 -2.39 -0.01 1.29 16 15 C -0.57 -30.50 6.35 25.60 0.16 -30.33 16 16 H 0.04 2.13 7.82 -2.91 -0.02 2.10 16 17 C -0.02 -0.97 5.46 84.65 0.46 -0.51 16 18 N -0.94 -57.74 13.63 21.45 0.29 -57.45 16 19 Si 1.09 53.81 29.91 68.60 2.05 55.87 16 20 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 21 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 C -0.06 -2.28 4.77 -19.87 -0.09 -2.37 16 24 C -0.12 -4.47 8.89 22.27 0.20 -4.27 16 25 C -0.13 -3.79 10.05 22.27 0.22 -3.56 16 26 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 27 C -0.12 -3.93 10.05 22.27 0.22 -3.70 16 28 C -0.15 -5.72 9.67 22.27 0.22 -5.51 16 29 H 0.05 1.07 7.96 -2.39 -0.02 1.05 16 30 H 0.07 1.07 5.19 -2.38 -0.01 1.05 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.41 7.75 -2.39 -0.02 1.39 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.45 8.39 8.11 -96.74 -0.78 7.61 16 38 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.11 3.29 7.91 -2.39 -0.02 3.27 16 40 H 0.26 15.91 6.49 -92.71 -0.60 15.30 16 41 H 0.11 4.10 7.82 -2.91 -0.02 4.08 16 42 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 45 H 0.10 3.93 7.95 -2.91 -0.02 3.91 16 Total: -1.00 -81.58 377.71 1.67 -79.91 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.38 Total: 26.04 kcal Atomic # 6 Polarization: -58.70 SS G_CDS: 3.86 Total: -54.83 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -0.27 Total: -87.18 kcal Atomic # 8 Polarization: -94.52 SS G_CDS: -4.10 Total: -98.63 kcal Atomic # 14 Polarization: 53.81 SS G_CDS: 2.05 Total: 55.87 kcal Atomic # 16 Polarization: 79.08 SS G_CDS: -0.25 Total: 78.83 kcal Total: -81.58 1.67 -79.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796834138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.707 kcal (2) G-P(sol) polarization free energy of solvation -81.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds