Wall clock time and date at job start Tue Mar 31 2020 23:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00454 * 2 1 4 4 O 1.20826 * 119.99524 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00575 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47297 * 180.02562 * 5 3 2 7 7 H 1.08993 * 109.47123 * 304.99853 * 6 5 3 8 8 C 1.53000 * 109.47232 * 64.99759 * 6 5 3 9 9 C 1.53002 * 109.47072 * 184.99530 * 6 5 3 10 10 C 1.50697 * 109.47057 * 174.99965 * 9 6 5 11 11 O 1.21294 * 120.00174 * 0.02562 * 10 9 6 12 12 N 1.34780 * 119.99921 * 180.02562 * 10 9 6 13 13 C 1.40088 * 120.00148 * 183.92933 * 12 10 9 14 14 C 1.38718 * 120.07429 * 334.49330 * 13 12 10 15 15 C 1.38181 * 120.01500 * 180.25093 * 14 13 12 16 16 C 1.38551 * 120.18474 * 359.45160 * 15 14 13 17 17 F 1.35094 * 119.92861 * 180.25246 * 16 15 14 18 18 C 1.38349 * 120.14949 * 0.27411 * 16 15 14 19 19 C 1.38742 * 119.97394 * 359.97438 * 18 16 15 20 20 O 1.35775 * 120.08531 * 179.97438 * 19 18 16 21 21 C 1.34806 * 116.99766 * 354.36717 * 20 19 18 22 22 H 1.07997 * 120.00488 * 354.63658 * 21 20 19 23 23 C 1.38639 * 119.99951 * 174.62896 * 21 20 19 24 24 N 1.31571 * 120.00028 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00331 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47163 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47176 * 120.00348 * 25 23 21 28 28 H 1.48496 * 109.47333 * 240.00283 * 25 23 21 29 29 H 1.09001 * 109.46892 * 299.99929 * 1 2 3 30 30 H 1.09007 * 109.47015 * 59.99488 * 1 2 3 31 31 H 1.08994 * 109.46794 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47250 * 59.99835 * 5 3 2 33 33 H 1.09007 * 109.46687 * 300.00163 * 5 3 2 34 34 H 1.09001 * 109.47345 * 300.00176 * 8 6 5 35 35 H 1.09001 * 109.47263 * 60.00075 * 8 6 5 36 36 H 1.08993 * 109.47357 * 179.97438 * 8 6 5 37 37 H 1.09002 * 109.47019 * 54.99824 * 9 6 5 38 38 H 1.09002 * 109.47175 * 295.00049 * 9 6 5 39 39 H 0.97001 * 119.99905 * 3.92910 * 12 10 9 40 40 H 1.07996 * 119.98826 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.90957 * 179.72488 * 15 14 13 42 42 H 1.07997 * 120.01365 * 179.97438 * 18 16 15 43 43 H 0.97004 * 120.00627 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.5377 3.2581 -0.8411 8 6 3.5607 3.4031 1.3081 9 6 5.5228 2.8237 -0.1260 10 6 5.9400 4.2666 -0.2488 11 8 5.1020 5.1434 -0.2361 12 7 7.2443 4.5827 -0.3727 13 6 7.6394 5.9264 -0.4040 14 6 6.7518 6.9022 -0.8330 15 6 7.1445 8.2265 -0.8683 16 6 8.4205 8.5857 -0.4653 17 9 8.7974 9.8826 -0.4971 18 6 9.3098 7.6191 -0.0307 19 6 8.9239 6.2869 0.0025 20 8 9.7950 5.3363 0.4281 21 6 11.0550 5.7356 0.6935 22 1 11.3552 6.7514 0.4828 23 6 11.9653 4.8424 1.2370 24 7 11.5996 3.6048 1.4934 25 14 13.7109 5.3958 1.6055 26 1 13.8673 6.8238 1.2292 27 1 13.9860 5.2335 3.0557 28 1 14.6671 4.5703 0.8249 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.9558 0.7809 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 2.4760 3.3449 1.3981 35 1 4.0233 2.8871 2.1494 36 1 3.8701 4.4482 1.3089 37 1 5.8438 2.2760 -1.0121 38 1 5.9847 2.3859 0.7589 39 1 7.9094 3.8799 -0.4402 40 1 5.7547 6.6263 -1.1429 41 1 6.4535 8.9844 -1.2069 42 1 10.3041 7.9015 0.2826 43 1 12.2366 2.9796 1.8734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808550734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:47 Heat of formation + Delta-G solvation = -173.594674 kcal Electronic energy + Delta-G solvation = -28794.736640 eV Core-core repulsion = 24334.546168 eV Total energy + Delta-G solvation = -4460.190472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.25160 -40.81009 -40.20371 -38.76249 -37.09613 -36.38208 -35.23436 -34.09138 -32.43189 -30.08856 -29.36315 -28.76892 -27.23175 -27.07186 -25.51896 -22.87576 -22.15620 -21.47002 -20.31449 -19.70921 -18.38065 -18.05868 -17.65494 -17.15322 -16.76960 -16.66980 -16.37171 -15.56225 -15.25958 -15.03162 -14.96884 -14.67366 -14.29683 -14.16626 -13.73488 -13.69964 -13.60028 -13.42560 -13.27975 -12.74994 -12.44869 -12.40032 -12.25470 -12.18151 -12.07129 -11.69531 -11.46351 -11.33391 -11.11326 -11.00837 -10.91148 -10.81324 -10.72560 -10.53215 -10.43304 -9.82674 -9.77603 -9.15201 -8.98859 -7.89473 -7.09758 -6.63326 -4.20936 1.79268 2.01336 2.11058 2.45791 2.92764 3.03815 3.06527 3.11639 3.48635 3.83010 4.33671 4.41522 4.67785 4.73184 4.80996 4.81705 4.88514 4.89182 4.94721 5.10319 5.17331 5.22972 5.30225 5.32134 5.50018 5.63316 5.69452 5.74635 5.80026 6.02016 6.02529 6.18616 6.28318 6.32261 6.52416 6.62657 6.73223 6.90247 6.96288 7.04500 7.16568 7.55392 7.64939 7.80288 7.90514 8.50840 8.83052 9.43647 10.53853 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002592 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.862409 B =10798.529536 C =12798.465235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.498 6.498 5 C -0.112 4.112 6 C -0.062 4.062 7 H 0.089 0.911 8 C -0.162 4.162 9 C -0.137 4.137 10 C 0.510 3.490 11 O -0.530 6.530 12 N -0.647 5.647 13 C 0.060 3.940 14 C -0.065 4.065 15 C -0.227 4.227 16 C 0.126 3.874 17 F -0.152 7.152 18 C -0.258 4.258 19 C 0.155 3.845 20 O -0.170 6.170 21 C -0.392 4.392 22 H 0.095 0.905 23 C 0.043 3.957 24 N -0.859 5.859 25 Si 0.942 3.058 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.417 0.583 40 H 0.156 0.844 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 -7.790 -3.272 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.385 6.385 5 C -0.149 4.149 6 C -0.081 4.081 7 H 0.108 0.892 8 C -0.219 4.219 9 C -0.177 4.177 10 C 0.298 3.702 11 O -0.408 6.408 12 N -0.290 5.290 13 C -0.034 4.034 14 C -0.085 4.085 15 C -0.248 4.248 16 C 0.106 3.894 17 F -0.131 7.131 18 C -0.278 4.278 19 C 0.099 3.901 20 O -0.073 6.073 21 C -0.467 4.467 22 H 0.112 0.888 23 C -0.162 4.162 24 N -0.494 5.494 25 Si 0.766 3.234 26 H -0.190 1.190 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.253 0.747 40 H 0.174 0.826 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.376 -7.350 -3.101 16.441 hybrid contribution 1.267 0.227 0.283 1.318 sum -13.109 -7.123 -2.819 15.183 Atomic orbital electron populations 1.23243 0.76484 1.03550 1.02578 1.86513 1.23379 1.33852 1.84340 1.23853 0.92350 0.81201 0.72350 1.90678 1.67213 1.36093 1.44513 1.21545 0.87332 1.00010 1.06048 1.20695 0.93350 0.92440 1.01627 0.89245 1.22098 1.02143 1.02841 0.94785 1.21710 0.96936 0.94087 1.04965 1.20568 0.81969 0.91454 0.76243 1.90568 1.50884 1.49705 1.49680 1.43208 1.08405 1.06852 1.70550 1.16982 0.92761 0.84240 1.09448 1.21072 1.00003 0.90590 0.96806 1.20550 0.95397 0.97053 1.11778 1.17500 0.93761 0.77381 1.00734 1.91407 1.92010 1.35205 1.94456 1.20851 1.02144 0.91843 1.13010 1.18769 0.89390 0.88286 0.93652 1.83916 1.20097 1.31384 1.71937 1.21386 0.82970 0.99024 1.43364 0.88811 1.25277 1.00081 0.94999 0.95836 1.70012 1.35841 1.03631 1.39895 0.85623 0.80113 0.79082 0.78559 1.18963 1.20032 1.20011 0.91923 0.91918 0.88223 0.87447 0.87363 0.91567 0.93589 0.90118 0.88484 0.88115 0.74711 0.82640 0.85988 0.83996 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.40 10.56 -39.26 -0.41 -3.82 16 3 C 0.46 4.84 7.67 36.00 0.28 5.11 16 4 O -0.50 -6.74 13.72 -18.75 -0.26 -7.00 16 5 C -0.11 -0.92 5.29 -27.89 -0.15 -1.07 16 6 C -0.06 -0.68 1.68 -90.62 -0.15 -0.84 16 7 H 0.09 1.14 7.77 -51.93 -0.40 0.74 16 8 C -0.16 -2.08 8.68 37.16 0.32 -1.75 16 9 C -0.14 -1.48 5.18 -27.88 -0.14 -1.62 16 10 C 0.51 7.88 7.44 -10.99 -0.08 7.80 16 11 O -0.53 -9.48 10.89 5.55 0.06 -9.42 16 12 N -0.65 -11.21 5.28 -9.72 -0.05 -11.26 16 13 C 0.06 1.22 6.47 -83.45 -0.54 0.68 16 14 C -0.06 -1.23 8.79 -39.42 -0.35 -1.58 16 15 C -0.23 -4.25 10.02 -39.49 -0.40 -4.64 16 16 C 0.13 2.53 7.29 -39.43 -0.29 2.24 16 17 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 18 C -0.26 -5.60 9.11 -39.35 -0.36 -5.96 16 19 C 0.15 3.51 6.66 -38.94 -0.26 3.25 16 20 O -0.17 -4.34 9.18 0.04 0.00 -4.34 16 21 C -0.39 -10.15 9.44 30.88 0.29 -9.86 16 22 H 0.09 2.31 5.29 -52.49 -0.28 2.03 16 23 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 24 N -0.86 -22.99 13.67 55.48 0.76 -22.23 16 25 Si 0.94 19.43 29.55 -169.99 -5.02 14.41 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 28 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.90 5.96 -51.93 -0.31 0.59 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 1.25 5.95 -51.93 -0.31 0.94 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.42 6.89 8.37 -40.82 -0.34 6.54 16 40 H 0.16 2.89 5.52 -52.49 -0.29 2.60 16 41 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.14 3.10 5.71 -52.49 -0.30 2.80 16 43 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -31.15 367.27 -5.38 -36.52 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.17 Total: 10.43 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.85 Total: -5.93 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.71 Total: -33.49 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.61 Total: -24.57 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.15 -5.38 -36.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808550734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.071 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds