Wall clock time and date at job start Tue Mar 31 2020 23:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00454 * 2 1 4 4 O 1.20826 * 119.99524 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00575 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47297 * 180.02562 * 5 3 2 7 7 H 1.08993 * 109.47123 * 304.99853 * 6 5 3 8 8 C 1.53000 * 109.47232 * 64.99759 * 6 5 3 9 9 C 1.53002 * 109.47072 * 184.99530 * 6 5 3 10 10 C 1.50697 * 109.47057 * 174.99965 * 9 6 5 11 11 O 1.21294 * 120.00174 * 0.02562 * 10 9 6 12 12 N 1.34780 * 119.99921 * 180.02562 * 10 9 6 13 13 C 1.40088 * 120.00148 * 183.92933 * 12 10 9 14 14 C 1.38718 * 120.07429 * 334.49330 * 13 12 10 15 15 C 1.38181 * 120.01500 * 180.25093 * 14 13 12 16 16 C 1.38551 * 120.18474 * 359.45160 * 15 14 13 17 17 F 1.35094 * 119.92861 * 180.25246 * 16 15 14 18 18 C 1.38349 * 120.14949 * 0.27411 * 16 15 14 19 19 C 1.38742 * 119.97394 * 359.97438 * 18 16 15 20 20 O 1.35775 * 120.08531 * 179.97438 * 19 18 16 21 21 C 1.34806 * 116.99766 * 354.36717 * 20 19 18 22 22 H 1.07997 * 120.00488 * 354.63658 * 21 20 19 23 23 C 1.38639 * 119.99951 * 174.62896 * 21 20 19 24 24 N 1.31571 * 120.00028 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00331 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47163 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47176 * 120.00348 * 25 23 21 28 28 H 1.48496 * 109.47333 * 240.00283 * 25 23 21 29 29 H 1.09001 * 109.46892 * 299.99929 * 1 2 3 30 30 H 1.09007 * 109.47015 * 59.99488 * 1 2 3 31 31 H 1.08994 * 109.46794 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47250 * 59.99835 * 5 3 2 33 33 H 1.09007 * 109.46687 * 300.00163 * 5 3 2 34 34 H 1.09001 * 109.47345 * 300.00176 * 8 6 5 35 35 H 1.09001 * 109.47263 * 60.00075 * 8 6 5 36 36 H 1.08993 * 109.47357 * 179.97438 * 8 6 5 37 37 H 1.09002 * 109.47019 * 54.99824 * 9 6 5 38 38 H 1.09002 * 109.47175 * 295.00049 * 9 6 5 39 39 H 0.97001 * 119.99905 * 3.92910 * 12 10 9 40 40 H 1.07996 * 119.98826 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.90957 * 179.72488 * 15 14 13 42 42 H 1.07997 * 120.01365 * 179.97438 * 18 16 15 43 43 H 0.97004 * 120.00627 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.5377 3.2581 -0.8411 8 6 3.5607 3.4031 1.3081 9 6 5.5228 2.8237 -0.1260 10 6 5.9400 4.2666 -0.2488 11 8 5.1020 5.1434 -0.2361 12 7 7.2443 4.5827 -0.3727 13 6 7.6394 5.9264 -0.4040 14 6 6.7518 6.9022 -0.8330 15 6 7.1445 8.2265 -0.8683 16 6 8.4205 8.5857 -0.4653 17 9 8.7974 9.8826 -0.4971 18 6 9.3098 7.6191 -0.0307 19 6 8.9239 6.2869 0.0025 20 8 9.7950 5.3363 0.4281 21 6 11.0550 5.7356 0.6935 22 1 11.3552 6.7514 0.4828 23 6 11.9653 4.8424 1.2370 24 7 11.5996 3.6048 1.4934 25 14 13.7109 5.3958 1.6055 26 1 13.8673 6.8238 1.2292 27 1 13.9860 5.2335 3.0557 28 1 14.6671 4.5703 0.8249 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.9558 0.7809 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 2.4760 3.3449 1.3981 35 1 4.0233 2.8871 2.1494 36 1 3.8701 4.4482 1.3089 37 1 5.8438 2.2760 -1.0121 38 1 5.9847 2.3859 0.7589 39 1 7.9094 3.8799 -0.4402 40 1 5.7547 6.6263 -1.1429 41 1 6.4535 8.9844 -1.2069 42 1 10.3041 7.9015 0.2826 43 1 12.2366 2.9796 1.8734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808550734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:46 Heat of formation + Delta-G solvation = -192.112932 kcal Electronic energy + Delta-G solvation = -28795.539652 eV Core-core repulsion = 24334.546168 eV Total energy + Delta-G solvation = -4460.993484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.83512 -41.80402 -41.44155 -40.29683 -38.19271 -37.71607 -36.24314 -35.50267 -34.29494 -31.32059 -30.78679 -29.91764 -28.38651 -27.80135 -27.34875 -24.29488 -23.55341 -22.72945 -21.45782 -20.71240 -20.15199 -19.51332 -18.70246 -18.26476 -18.14099 -17.55820 -17.34741 -16.99030 -16.83295 -16.53650 -16.36555 -15.94007 -15.77767 -15.38239 -15.33506 -15.01636 -14.82187 -14.73544 -14.27300 -14.05082 -13.81497 -13.69292 -13.41613 -13.25928 -13.10371 -12.91307 -12.84012 -12.60016 -12.33773 -12.25135 -12.12311 -11.97418 -11.77612 -11.65762 -11.64989 -11.31023 -11.24468 -10.82449 -10.50892 -9.55643 -8.71265 -8.50520 -6.15806 0.19122 0.45931 1.23917 1.38599 1.43654 1.53908 1.64070 1.77217 2.13412 2.24270 2.68732 3.04574 3.18253 3.45433 3.56135 3.78983 3.92253 3.95992 4.01584 4.16152 4.31437 4.33792 4.36770 4.37625 4.57445 4.58608 4.67762 4.72430 4.74048 4.76132 4.94891 4.97616 5.03179 5.09755 5.22997 5.32358 5.35394 5.37870 5.46412 5.52463 5.60208 5.94225 6.06139 6.55273 6.79507 6.94522 7.20131 7.62279 8.70086 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002592 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.862409 B =10798.529536 C =12798.465235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.458 3.542 4 O -0.537 6.537 5 C -0.105 4.105 6 C -0.057 4.057 7 H 0.068 0.932 8 C -0.159 4.159 9 C -0.127 4.127 10 C 0.507 3.493 11 O -0.555 6.555 12 N -0.651 5.651 13 C 0.065 3.935 14 C -0.068 4.068 15 C -0.206 4.206 16 C 0.117 3.883 17 F -0.147 7.147 18 C -0.264 4.264 19 C 0.128 3.872 20 O -0.200 6.200 21 C -0.415 4.415 22 H 0.096 0.904 23 C -0.006 4.006 24 N -0.902 5.902 25 Si 1.009 2.991 26 H -0.259 1.259 27 H -0.270 1.270 28 H -0.266 1.266 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.420 0.580 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.134 0.866 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 -8.788 -3.775 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.303 3.697 4 O -0.427 6.427 5 C -0.142 4.142 6 C -0.076 4.076 7 H 0.087 0.913 8 C -0.216 4.216 9 C -0.167 4.167 10 C 0.297 3.703 11 O -0.434 6.434 12 N -0.294 5.294 13 C -0.030 4.030 14 C -0.089 4.089 15 C -0.225 4.225 16 C 0.097 3.903 17 F -0.125 7.125 18 C -0.285 4.285 19 C 0.075 3.925 20 O -0.105 6.105 21 C -0.491 4.491 22 H 0.114 0.886 23 C -0.206 4.206 24 N -0.538 5.538 25 Si 0.829 3.171 26 H -0.183 1.183 27 H -0.195 1.195 28 H -0.191 1.191 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.151 0.849 38 H 0.137 0.863 39 H 0.257 0.743 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.152 0.848 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.732 -8.355 -3.622 17.319 hybrid contribution 1.086 0.626 0.370 1.307 sum -13.646 -7.728 -3.252 16.016 Atomic orbital electron populations 1.23490 0.75287 1.05496 1.02240 1.86506 1.24632 1.33133 1.83882 1.24318 0.93242 0.80925 0.71189 1.90672 1.68206 1.37350 1.46486 1.21565 0.85822 0.98084 1.08737 1.20578 0.93266 0.94196 0.99553 0.91339 1.22031 1.01500 1.01349 0.96684 1.21773 0.96628 0.90764 1.07486 1.21478 0.80761 0.93378 0.74671 1.90555 1.51285 1.51105 1.50472 1.43373 1.09377 1.05754 1.70945 1.17245 0.91973 0.86073 1.07734 1.21275 1.00143 0.90641 0.96792 1.20928 0.94993 0.97594 1.09019 1.17500 0.94080 0.77372 1.01372 1.91419 1.92038 1.34617 1.94457 1.20928 1.02280 0.92201 1.13101 1.19112 0.90252 0.88503 0.94659 1.83890 1.20324 1.32347 1.73969 1.21731 0.83778 0.99461 1.44117 0.88619 1.26316 1.03940 0.94996 0.95387 1.70104 1.37421 1.04778 1.41531 0.84647 0.75001 0.78926 0.78477 1.18302 1.19503 1.19088 0.92375 0.92235 0.85155 0.84265 0.84944 0.92709 0.92190 0.93211 0.84869 0.86296 0.74329 0.81710 0.82867 0.84791 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.37 -6.11 10.56 -51.42 -0.54 -6.65 16 3 C 0.46 8.93 7.67 71.24 0.55 9.48 16 4 O -0.54 -14.44 13.72 21.96 0.30 -14.14 16 5 C -0.11 -1.41 5.29 29.85 0.16 -1.25 16 6 C -0.06 -1.15 1.68 -10.79 -0.02 -1.17 16 7 H 0.07 1.70 7.77 -2.39 -0.02 1.68 16 8 C -0.16 -4.00 8.68 71.98 0.62 -3.37 16 9 C -0.13 -2.42 5.18 29.85 0.15 -2.26 16 10 C 0.51 15.13 7.44 87.66 0.65 15.79 16 11 O -0.55 -19.60 10.89 -3.07 -0.03 -19.63 16 12 N -0.65 -22.27 5.28 -303.03 -1.60 -23.86 16 13 C 0.07 2.64 6.47 38.23 0.25 2.89 16 14 C -0.07 -2.54 8.79 22.37 0.20 -2.34 16 15 C -0.21 -7.30 10.02 22.33 0.22 -7.08 16 16 C 0.12 4.58 7.29 22.37 0.16 4.75 16 17 F -0.15 -5.47 17.26 44.97 0.78 -4.70 16 18 C -0.26 -11.65 9.11 22.42 0.20 -11.45 16 19 C 0.13 5.93 6.66 22.69 0.15 6.08 16 20 O -0.20 -10.53 9.18 -22.78 -0.21 -10.74 16 21 C -0.42 -22.12 9.44 67.92 0.64 -21.48 16 22 H 0.10 4.86 5.29 -2.91 -0.02 4.84 16 23 C -0.01 -0.33 5.49 84.83 0.47 0.14 16 24 N -0.90 -49.19 13.67 21.61 0.30 -48.90 16 25 Si 1.01 40.01 29.55 68.60 2.03 42.04 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 27 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 28 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.06 0.77 8.13 -2.38 -0.02 0.75 16 31 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.05 1.50 5.96 -2.39 -0.01 1.48 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.55 5.95 -2.39 -0.01 1.54 16 37 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.42 13.79 8.37 -92.71 -0.78 13.01 16 40 H 0.17 5.91 5.52 -2.91 -0.02 5.90 16 41 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.13 6.02 5.71 -2.91 -0.02 6.01 16 43 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -70.19 367.27 6.92 -63.27 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.30 Total: 33.05 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.61 Total: -9.74 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.30 Total: -72.76 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.48 Total: -51.16 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.70 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -70.19 6.92 -63.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808550734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.845 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds