Wall clock time and date at job start Tue Mar 31 2020 23:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99575 * 2 1 4 4 O 1.20821 * 120.00779 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99546 * 180.27312 * 3 2 1 6 6 C 1.53001 * 109.47241 * 179.72720 * 5 3 2 7 7 H 1.08996 * 109.46926 * 54.99537 * 6 5 3 8 8 C 1.53000 * 109.46570 * 295.00075 * 6 5 3 9 9 C 1.53002 * 109.46916 * 175.00151 * 6 5 3 10 10 C 1.50701 * 109.46794 * 184.99613 * 9 6 5 11 11 O 1.21298 * 120.00022 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00096 * 180.02562 * 10 9 6 13 13 C 1.40084 * 120.00018 * 174.44422 * 12 10 9 14 14 C 1.38705 * 120.07986 * 335.19551 * 13 12 10 15 15 C 1.38182 * 120.02264 * 179.69886 * 14 13 12 16 16 C 1.38550 * 120.17694 * 0.59774 * 15 14 13 17 17 F 1.35097 * 119.92644 * 179.69809 * 16 15 14 18 18 C 1.38347 * 120.15422 * 359.67862 * 16 15 14 19 19 C 1.38745 * 119.97322 * 0.02562 * 18 16 15 20 20 O 1.35767 * 120.08345 * 179.97438 * 19 18 16 21 21 C 1.34807 * 117.00248 * 5.16399 * 20 19 18 22 22 H 1.07997 * 120.00027 * 354.98153 * 21 20 19 23 23 C 1.38640 * 119.99896 * 174.98286 * 21 20 19 24 24 N 1.31570 * 119.99849 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00070 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47292 * 90.00306 * 25 23 21 27 27 H 1.48499 * 109.47236 * 210.00231 * 25 23 21 28 28 H 1.48498 * 109.47093 * 330.00108 * 25 23 21 29 29 H 1.08998 * 109.47213 * 300.00221 * 1 2 3 30 30 H 1.09002 * 109.46874 * 59.99854 * 1 2 3 31 31 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46817 * 299.72569 * 5 3 2 33 33 H 1.09000 * 109.47271 * 59.72236 * 5 3 2 34 34 H 1.09005 * 109.46667 * 180.02562 * 8 6 5 35 35 H 1.09004 * 109.47389 * 299.99414 * 8 6 5 36 36 H 1.08993 * 109.47581 * 60.00313 * 8 6 5 37 37 H 1.08998 * 109.47223 * 304.99588 * 9 6 5 38 38 H 1.09003 * 109.46932 * 65.00211 * 9 6 5 39 39 H 0.96998 * 119.99417 * 354.44224 * 12 10 9 40 40 H 1.08004 * 119.98855 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.91384 * 180.29611 * 15 14 13 42 42 H 1.07996 * 120.01091 * 180.02562 * 18 16 15 43 43 H 0.97000 * 119.99825 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0062 6 6 4.0002 2.7421 -0.0118 7 1 3.5413 3.2598 0.8305 8 6 3.5549 3.4005 -1.3191 9 6 5.5233 2.8240 0.1076 10 6 5.9410 4.2671 0.2256 11 8 5.1028 5.1439 0.2157 12 7 7.2459 4.5836 0.3422 13 6 7.6443 5.9266 0.3347 14 6 6.8517 6.8834 -0.2819 15 6 7.2427 8.2088 -0.2832 16 6 8.4321 8.5845 0.3198 17 9 8.8125 9.8808 0.3103 18 6 9.2311 7.6354 0.9321 19 6 8.8416 6.3038 0.9424 20 8 9.6242 5.3705 1.5422 21 6 10.7123 5.8162 2.2016 22 1 10.9728 6.8637 2.1676 23 6 11.4968 4.9298 2.9234 24 7 12.5589 5.3647 3.5666 25 14 11.0457 3.1181 2.9827 26 1 11.7098 2.4057 1.8617 27 1 11.4957 2.5379 4.2735 28 1 9.5732 2.9703 2.8601 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9596 0.7831 0.8835 33 1 3.9526 0.7784 -0.8964 34 1 3.8643 4.4457 -1.3232 35 1 4.0138 2.8828 -2.1614 36 1 2.4698 3.3422 -1.4042 37 1 5.8482 2.2781 0.9934 38 1 5.9814 2.3845 -0.7785 39 1 7.9091 3.8814 0.4312 40 1 5.9265 6.5931 -0.7574 41 1 6.6219 8.9530 -0.7597 42 1 10.1576 7.9310 1.4018 43 1 13.1076 4.7446 4.0719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808550737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:51 Heat of formation + Delta-G solvation = -171.451952 kcal Electronic energy + Delta-G solvation = -28893.004824 eV Core-core repulsion = 24432.907267 eV Total energy + Delta-G solvation = -4460.097556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.30008 -40.89396 -40.34777 -38.94615 -37.19080 -36.54978 -35.34859 -34.24895 -32.53802 -30.18425 -29.57491 -28.93546 -27.37065 -27.17772 -25.46122 -23.03807 -22.11176 -21.54985 -20.41937 -19.84636 -18.39256 -18.13082 -17.80885 -17.27986 -16.84688 -16.75351 -16.48190 -15.75270 -15.44442 -15.22641 -15.01814 -14.60102 -14.26782 -14.16510 -14.03367 -13.83836 -13.65529 -13.48408 -13.26085 -12.91753 -12.56065 -12.50977 -12.40545 -12.31018 -12.17746 -11.89720 -11.55440 -11.46743 -11.18116 -11.08436 -11.00463 -10.91869 -10.80077 -10.53564 -10.49932 -9.86060 -9.76657 -9.38841 -9.03589 -8.00479 -7.23996 -6.57090 -4.24637 1.66609 1.94152 1.98366 2.38505 2.79779 3.07969 3.10385 3.19491 3.31575 4.05646 4.22055 4.31105 4.47087 4.57244 4.62389 4.74021 4.76255 4.83812 4.91860 4.96825 5.07733 5.11772 5.18960 5.22718 5.34360 5.50177 5.54321 5.66136 5.67485 5.87074 5.92565 6.04254 6.16168 6.21743 6.35027 6.46135 6.67372 6.78636 6.84150 6.93828 7.42341 7.48232 7.59139 7.72398 7.84318 8.34968 8.75535 9.29701 10.50084 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.002882 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.006507 B = 9712.355198 C =11972.964814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.498 6.498 5 C -0.112 4.112 6 C -0.064 4.064 7 H 0.091 0.909 8 C -0.161 4.161 9 C -0.138 4.138 10 C 0.509 3.491 11 O -0.524 6.524 12 N -0.653 5.653 13 C 0.064 3.936 14 C -0.062 4.062 15 C -0.219 4.219 16 C 0.126 3.874 17 F -0.149 7.149 18 C -0.244 4.244 19 C 0.162 3.838 20 O -0.210 6.210 21 C -0.391 4.391 22 H 0.109 0.891 23 C 0.065 3.935 24 N -0.872 5.872 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.260 1.260 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.413 0.587 40 H 0.149 0.851 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.686 -11.555 -8.316 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.384 6.384 5 C -0.149 4.149 6 C -0.083 4.083 7 H 0.109 0.891 8 C -0.218 4.218 9 C -0.178 4.178 10 C 0.297 3.703 11 O -0.401 6.401 12 N -0.296 5.296 13 C -0.031 4.031 14 C -0.082 4.082 15 C -0.239 4.239 16 C 0.107 3.893 17 F -0.128 7.128 18 C -0.265 4.265 19 C 0.107 3.893 20 O -0.115 6.115 21 C -0.466 4.466 22 H 0.126 0.874 23 C -0.139 4.139 24 N -0.508 5.508 25 Si 0.731 3.269 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.184 1.184 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.248 0.752 40 H 0.167 0.833 41 H 0.143 0.857 42 H 0.167 0.833 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.322 -10.949 -8.163 22.058 hybrid contribution 0.421 -0.727 0.340 0.906 sum -16.901 -11.676 -7.823 21.981 Atomic orbital electron populations 1.23253 0.76392 1.03595 1.02616 1.86511 1.23448 1.33791 1.84319 1.23820 0.92316 0.81241 0.72408 1.90681 1.67206 1.36081 1.44462 1.21536 0.87475 0.99903 1.06013 1.20711 0.93219 0.92597 1.01766 0.89083 1.22093 1.02341 1.02658 0.94665 1.21724 0.97132 0.94062 1.04862 1.20579 0.81806 0.91514 0.76426 1.90635 1.50636 1.49928 1.48924 1.43241 1.08294 1.06785 1.71309 1.16939 0.95022 0.84542 1.06550 1.20775 0.99559 0.90868 0.96982 1.20570 0.97691 0.96901 1.08718 1.17479 0.94490 0.77664 0.99706 1.91426 1.91408 1.35028 1.94897 1.20978 1.04016 0.92057 1.09442 1.18433 0.89755 0.88103 0.92962 1.83475 1.35306 1.32296 1.60440 1.20754 0.99970 0.97605 1.28298 0.87383 1.24481 0.94687 1.00181 0.94550 1.69643 1.14589 1.36556 1.30041 0.86188 0.79902 0.82841 0.77970 1.19678 1.20617 1.18400 0.91868 0.91905 0.88188 0.87426 0.87427 0.90206 0.93653 0.91435 0.88377 0.88278 0.75179 0.83331 0.85731 0.83341 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.19 10.57 -39.25 -0.41 -3.61 16 3 C 0.46 4.53 7.68 36.01 0.28 4.81 16 4 O -0.50 -6.43 13.72 -18.75 -0.26 -6.69 16 5 C -0.11 -0.82 5.29 -27.88 -0.15 -0.97 16 6 C -0.06 -0.64 1.68 -90.62 -0.15 -0.79 16 7 H 0.09 1.13 7.77 -51.93 -0.40 0.73 16 8 C -0.16 -1.78 8.68 37.16 0.32 -1.46 16 9 C -0.14 -1.30 5.18 -27.88 -0.14 -1.45 16 10 C 0.51 7.24 7.35 -10.98 -0.08 7.15 16 11 O -0.52 -8.88 11.14 5.54 0.06 -8.82 16 12 N -0.65 -10.33 5.29 -9.72 -0.05 -10.38 16 13 C 0.06 1.21 6.45 -83.45 -0.54 0.67 16 14 C -0.06 -1.10 8.71 -39.43 -0.34 -1.45 16 15 C -0.22 -3.89 10.02 -39.49 -0.40 -4.28 16 16 C 0.13 2.47 7.29 -39.43 -0.29 2.19 16 17 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 18 C -0.24 -5.23 9.14 -39.35 -0.36 -5.59 16 19 C 0.16 3.49 6.66 -38.93 -0.26 3.23 16 20 O -0.21 -4.96 8.00 0.06 0.00 -4.96 16 21 C -0.39 -10.27 9.95 30.88 0.31 -9.96 16 22 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 23 C 0.07 1.71 5.49 -17.52 -0.10 1.62 16 24 N -0.87 -23.93 13.96 55.48 0.77 -23.16 16 25 Si 0.91 19.57 28.62 -169.99 -4.86 14.70 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 29 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 35 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.82 5.96 -51.93 -0.31 0.51 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.41 5.94 8.34 -40.82 -0.34 5.60 16 40 H 0.15 2.55 5.79 -52.48 -0.30 2.24 16 41 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.15 3.34 5.63 -52.49 -0.30 3.04 16 43 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -31.15 366.36 -5.21 -36.36 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.19 Total: 8.83 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.83 Total: -4.99 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.72 Total: -33.54 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.61 Total: -24.08 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.86 Total: 14.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.15 -5.21 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808550737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.092 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds