Wall clock time and date at job start Tue Mar 31 2020 23:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99575 * 2 1 4 4 O 1.20821 * 120.00779 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99546 * 180.27312 * 3 2 1 6 6 C 1.53001 * 109.47241 * 179.72720 * 5 3 2 7 7 H 1.08996 * 109.46926 * 54.99537 * 6 5 3 8 8 C 1.53000 * 109.46570 * 295.00075 * 6 5 3 9 9 C 1.53002 * 109.46916 * 175.00151 * 6 5 3 10 10 C 1.50701 * 109.46794 * 184.99613 * 9 6 5 11 11 O 1.21298 * 120.00022 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00096 * 180.02562 * 10 9 6 13 13 C 1.40084 * 120.00018 * 174.44422 * 12 10 9 14 14 C 1.38705 * 120.07986 * 335.19551 * 13 12 10 15 15 C 1.38182 * 120.02264 * 179.69886 * 14 13 12 16 16 C 1.38550 * 120.17694 * 0.59774 * 15 14 13 17 17 F 1.35097 * 119.92644 * 179.69809 * 16 15 14 18 18 C 1.38347 * 120.15422 * 359.67862 * 16 15 14 19 19 C 1.38745 * 119.97322 * 0.02562 * 18 16 15 20 20 O 1.35767 * 120.08345 * 179.97438 * 19 18 16 21 21 C 1.34807 * 117.00248 * 5.16399 * 20 19 18 22 22 H 1.07997 * 120.00027 * 354.98153 * 21 20 19 23 23 C 1.38640 * 119.99896 * 174.98286 * 21 20 19 24 24 N 1.31570 * 119.99849 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00070 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47292 * 90.00306 * 25 23 21 27 27 H 1.48499 * 109.47236 * 210.00231 * 25 23 21 28 28 H 1.48498 * 109.47093 * 330.00108 * 25 23 21 29 29 H 1.08998 * 109.47213 * 300.00221 * 1 2 3 30 30 H 1.09002 * 109.46874 * 59.99854 * 1 2 3 31 31 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46817 * 299.72569 * 5 3 2 33 33 H 1.09000 * 109.47271 * 59.72236 * 5 3 2 34 34 H 1.09005 * 109.46667 * 180.02562 * 8 6 5 35 35 H 1.09004 * 109.47389 * 299.99414 * 8 6 5 36 36 H 1.08993 * 109.47581 * 60.00313 * 8 6 5 37 37 H 1.08998 * 109.47223 * 304.99588 * 9 6 5 38 38 H 1.09003 * 109.46932 * 65.00211 * 9 6 5 39 39 H 0.96998 * 119.99417 * 354.44224 * 12 10 9 40 40 H 1.08004 * 119.98855 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.91384 * 180.29611 * 15 14 13 42 42 H 1.07996 * 120.01091 * 180.02562 * 18 16 15 43 43 H 0.97000 * 119.99825 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0062 6 6 4.0002 2.7421 -0.0118 7 1 3.5413 3.2598 0.8305 8 6 3.5549 3.4005 -1.3191 9 6 5.5233 2.8240 0.1076 10 6 5.9410 4.2671 0.2256 11 8 5.1028 5.1439 0.2157 12 7 7.2459 4.5836 0.3422 13 6 7.6443 5.9266 0.3347 14 6 6.8517 6.8834 -0.2819 15 6 7.2427 8.2088 -0.2832 16 6 8.4321 8.5845 0.3198 17 9 8.8125 9.8808 0.3103 18 6 9.2311 7.6354 0.9321 19 6 8.8416 6.3038 0.9424 20 8 9.6242 5.3705 1.5422 21 6 10.7123 5.8162 2.2016 22 1 10.9728 6.8637 2.1676 23 6 11.4968 4.9298 2.9234 24 7 12.5589 5.3647 3.5666 25 14 11.0457 3.1181 2.9827 26 1 11.7098 2.4057 1.8617 27 1 11.4957 2.5379 4.2735 28 1 9.5732 2.9703 2.8601 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9596 0.7831 0.8835 33 1 3.9526 0.7784 -0.8964 34 1 3.8643 4.4457 -1.3232 35 1 4.0138 2.8828 -2.1614 36 1 2.4698 3.3422 -1.4042 37 1 5.8482 2.2781 0.9934 38 1 5.9814 2.3845 -0.7785 39 1 7.9091 3.8814 0.4312 40 1 5.9265 6.5931 -0.7574 41 1 6.6219 8.9530 -0.7597 42 1 10.1576 7.9310 1.4018 43 1 13.1076 4.7446 4.0719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808550737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:50 Heat of formation + Delta-G solvation = -190.524624 kcal Electronic energy + Delta-G solvation = -28893.831877 eV Core-core repulsion = 24432.907267 eV Total energy + Delta-G solvation = -4460.924609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.86789 -41.85418 -41.46846 -40.40331 -38.29023 -37.74460 -36.25180 -35.55795 -34.46297 -31.38493 -30.94115 -29.97253 -28.42060 -27.79348 -27.29245 -24.37114 -23.44828 -22.77903 -21.48076 -20.72485 -20.12735 -19.68654 -18.74960 -18.27386 -18.16020 -17.56188 -17.35160 -17.15818 -16.94045 -16.56860 -16.36200 -15.87700 -15.67024 -15.59731 -15.38726 -15.10468 -14.83461 -14.66718 -14.25721 -14.24031 -13.95970 -13.75985 -13.55989 -13.23819 -13.13340 -12.91076 -12.82653 -12.59227 -12.40595 -12.26699 -12.12829 -11.98497 -11.77239 -11.64682 -11.63909 -11.31842 -11.21365 -10.92438 -10.63830 -9.63065 -8.78100 -8.50172 -6.25286 0.12765 0.38468 1.24291 1.36845 1.42746 1.55550 1.63682 1.75927 2.17074 2.29339 2.62901 2.76555 3.03360 3.36811 3.55270 3.77776 3.89020 3.95078 4.00702 4.12627 4.27030 4.30934 4.33302 4.36789 4.54661 4.58623 4.64813 4.72613 4.73931 4.77606 4.86960 4.96985 5.09512 5.13750 5.16722 5.28553 5.36847 5.46391 5.49093 5.57220 5.62133 5.82038 6.06891 6.50937 6.79679 6.80894 7.17601 7.42639 8.60687 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.002882 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.006507 B = 9712.355198 C =11972.964814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.456 3.544 4 O -0.538 6.538 5 C -0.105 4.105 6 C -0.061 4.061 7 H 0.059 0.941 8 C -0.157 4.157 9 C -0.128 4.128 10 C 0.507 3.493 11 O -0.553 6.553 12 N -0.654 5.654 13 C 0.079 3.921 14 C -0.063 4.063 15 C -0.193 4.193 16 C 0.113 3.887 17 F -0.148 7.148 18 C -0.257 4.257 19 C 0.136 3.864 20 O -0.218 6.218 21 C -0.403 4.403 22 H 0.076 0.924 23 C 0.010 3.990 24 N -0.922 5.922 25 Si 0.974 3.026 26 H -0.258 1.258 27 H -0.277 1.277 28 H -0.243 1.243 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.421 0.579 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.125 0.875 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.516 -14.678 -9.689 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.301 3.699 4 O -0.428 6.428 5 C -0.142 4.142 6 C -0.080 4.080 7 H 0.078 0.922 8 C -0.214 4.214 9 C -0.167 4.167 10 C 0.297 3.703 11 O -0.432 6.432 12 N -0.299 5.299 13 C -0.016 4.016 14 C -0.084 4.084 15 C -0.213 4.213 16 C 0.093 3.907 17 F -0.127 7.127 18 C -0.277 4.277 19 C 0.084 3.916 20 O -0.125 6.125 21 C -0.479 4.479 22 H 0.094 0.906 23 C -0.190 4.190 24 N -0.561 5.561 25 Si 0.795 3.205 26 H -0.183 1.183 27 H -0.202 1.202 28 H -0.166 1.166 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.258 0.742 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.143 0.857 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.186 -14.083 -9.565 25.650 hybrid contribution 0.750 0.419 0.635 1.069 sum -18.436 -13.663 -8.930 24.623 Atomic orbital electron populations 1.23481 0.75354 1.05465 1.02201 1.86506 1.24567 1.33191 1.83890 1.24391 0.93392 0.80889 0.71187 1.90677 1.68273 1.37382 1.46485 1.21580 0.85623 0.98163 1.08797 1.20606 0.93506 0.94162 0.99750 0.92238 1.22026 1.01425 1.01545 0.96430 1.21804 0.96513 0.90523 1.07858 1.21538 0.80576 0.93481 0.74682 1.90630 1.51198 1.51470 1.49860 1.43407 1.09407 1.05506 1.71591 1.17107 0.93546 0.86586 1.04388 1.21033 0.99779 0.90728 0.96812 1.20959 0.96448 0.97663 1.06208 1.17527 0.95153 0.77480 1.00570 1.91426 1.91521 1.34753 1.94956 1.20985 1.03742 0.93062 1.09952 1.18756 0.90933 0.88050 0.93888 1.83420 1.35072 1.32249 1.61723 1.20623 1.01328 0.96617 1.29332 0.90624 1.25420 0.94351 1.05292 0.93889 1.69752 1.16187 1.38442 1.31727 0.85168 0.80572 0.76434 0.78357 1.18265 1.20244 1.16606 0.92460 0.92242 0.85193 0.84710 0.84288 0.92812 0.91312 0.93140 0.85586 0.84642 0.74155 0.81873 0.82512 0.85696 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.37 -5.53 10.57 -51.38 -0.54 -6.07 16 3 C 0.46 8.05 7.68 71.24 0.55 8.60 16 4 O -0.54 -13.66 13.72 21.98 0.30 -13.36 16 5 C -0.10 -1.11 5.29 29.85 0.16 -0.96 16 6 C -0.06 -1.04 1.68 -10.79 -0.02 -1.06 16 7 H 0.06 1.41 7.77 -2.39 -0.02 1.39 16 8 C -0.16 -3.19 8.68 71.98 0.62 -2.56 16 9 C -0.13 -1.84 5.18 29.85 0.15 -1.68 16 10 C 0.51 12.95 7.35 87.66 0.64 13.59 16 11 O -0.55 -17.77 11.14 -3.09 -0.03 -17.80 16 12 N -0.65 -19.04 5.29 -303.04 -1.60 -20.64 16 13 C 0.08 2.89 6.45 38.23 0.25 3.14 16 14 C -0.06 -2.14 8.71 22.37 0.19 -1.95 16 15 C -0.19 -6.48 10.02 22.33 0.22 -6.26 16 16 C 0.11 4.39 7.29 22.37 0.16 4.55 16 17 F -0.15 -5.64 17.26 44.97 0.78 -4.87 16 18 C -0.26 -11.40 9.14 22.42 0.20 -11.19 16 19 C 0.14 5.92 6.66 22.69 0.15 6.07 16 20 O -0.22 -10.41 8.00 -22.70 -0.18 -10.59 16 21 C -0.40 -22.08 9.95 67.92 0.68 -21.40 16 22 H 0.08 4.50 5.44 -2.91 -0.02 4.48 16 23 C 0.01 0.51 5.49 84.83 0.47 0.98 16 24 N -0.92 -52.59 13.96 21.61 0.30 -52.29 16 25 Si 0.97 39.80 28.62 68.60 1.96 41.76 16 26 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 27 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.24 -9.11 7.11 99.48 0.71 -8.41 16 29 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 1.37 5.95 -2.38 -0.01 1.35 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.20 5.96 -2.39 -0.01 1.18 16 37 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.42 10.83 8.34 -92.71 -0.77 10.05 16 40 H 0.16 5.19 5.79 -2.91 -0.02 5.17 16 41 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.13 6.10 5.63 -2.91 -0.02 6.09 16 43 H 0.29 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -72.50 366.36 6.92 -65.59 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.30 Total: 26.89 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.63 Total: -8.61 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -1.30 Total: -72.93 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.46 Total: -47.82 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.78 Total: -4.87 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.96 Total: 41.76 kcal Total: -72.50 6.92 -65.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808550737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.937 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds