Wall clock time and date at job start Tue Mar 31 2020 23:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.47103 * 2 1 4 4 S 1.81398 * 109.46993 * 119.99578 * 2 1 3 5 5 O 1.42098 * 108.57685 * 70.51612 * 4 2 1 6 6 O 1.42094 * 108.58222 * 299.48807 * 4 2 1 7 7 C 1.81407 * 101.92125 * 185.00192 * 4 2 1 8 8 C 1.53002 * 109.46924 * 180.02562 * 7 4 2 9 9 N 1.46503 * 109.46820 * 179.97438 * 8 7 4 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.08997 * 109.47091 * 300.00185 * 1 2 3 28 28 H 1.09004 * 109.46826 * 60.00082 * 1 2 3 29 29 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47532 * 239.99973 * 2 1 3 31 31 H 1.08993 * 109.47013 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46733 * 300.00035 * 3 2 1 33 33 H 1.09001 * 109.46948 * 59.99616 * 3 2 1 34 34 H 1.08994 * 109.47157 * 60.00161 * 7 4 2 35 35 H 1.08997 * 109.47113 * 300.00057 * 7 4 2 36 36 H 1.08994 * 109.47287 * 59.99977 * 8 7 4 37 37 H 1.08997 * 109.47057 * 299.99828 * 8 7 4 38 38 H 0.97002 * 120.00149 * 0.02562 * 9 8 7 39 39 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 40 40 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 41 41 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 42 42 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 43 43 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 45 45 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 16 2.1346 -0.8550 1.4812 5 8 1.8620 -2.2430 1.3457 6 8 1.6605 -0.1636 2.6284 7 6 3.9266 -0.6030 1.3541 8 6 4.6210 -1.2699 2.5432 9 7 6.0682 -1.0669 2.4403 10 6 6.8881 -1.5698 3.3843 11 8 6.4278 -2.1909 4.3188 12 6 8.3767 -1.3605 3.2787 13 6 9.0607 -2.0175 4.4499 14 6 9.3633 -1.2832 5.5741 15 6 9.9985 -1.8834 6.6500 16 6 10.3298 -3.2292 6.6103 17 6 10.0312 -3.9842 5.4993 18 6 9.3866 -3.3853 4.4009 19 6 9.0743 -4.1513 3.2542 20 1 8.9846 -3.6702 2.2914 21 6 8.8813 -5.5328 3.3667 22 7 8.6719 -6.0705 4.5408 23 14 8.9229 -6.6091 1.8405 24 1 7.5398 -6.8106 1.3390 25 1 9.7388 -5.9477 0.7905 26 1 9.5234 -7.9245 2.1787 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 4.1445 0.4650 1.3579 35 1 4.2908 -1.0448 0.4266 36 1 4.4031 -2.3378 2.5390 37 1 4.2569 -0.8285 3.4709 38 1 6.4363 -0.5698 1.6930 39 1 8.5946 -0.2925 3.2826 40 1 8.7408 -1.8022 2.3512 41 1 9.1093 -0.2344 5.6161 42 1 10.2365 -1.2985 7.5261 43 1 10.8242 -3.6867 7.4545 44 1 10.2898 -5.0323 5.4707 45 1 8.5384 -7.0281 4.6189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811555374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:04 Heat of formation + Delta-G solvation = -97.766423 kcal Electronic energy + Delta-G solvation = -26992.634993 eV Core-core repulsion = 23101.945857 eV Total energy + Delta-G solvation = -3890.689136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.19666 -37.35581 -37.28727 -36.31671 -35.55510 -35.05583 -33.55675 -31.89778 -30.78008 -29.40821 -27.94057 -26.77163 -25.01806 -23.78906 -22.58512 -20.91427 -20.63495 -19.40006 -18.93552 -17.50876 -17.19350 -16.65028 -16.45892 -15.92401 -15.64828 -15.45527 -15.26650 -14.84064 -14.40436 -14.17433 -13.85211 -13.65967 -13.51337 -13.17505 -13.08055 -12.86308 -12.55477 -12.44692 -12.33739 -12.23750 -12.09842 -11.92747 -11.84123 -11.72062 -11.48122 -11.25013 -11.11381 -11.07157 -10.86963 -10.67022 -10.59502 -10.37555 -9.45124 -9.31591 -9.11391 -9.09359 -8.75402 -7.28423 -7.26123 -6.66244 -4.27794 -0.40746 2.38383 2.82867 2.98549 3.09876 3.12494 3.22927 3.30411 3.41133 3.61249 3.75056 3.97540 4.02828 4.07961 4.22191 4.50943 4.56430 4.72788 4.91866 4.94574 5.08795 5.09518 5.23673 5.44739 5.48117 5.51333 5.54898 5.71151 5.82363 5.99886 6.16263 6.31915 6.38824 6.56191 6.70236 6.80697 7.15634 7.32726 7.46288 7.67805 7.89681 7.98140 8.08182 8.17055 8.36462 8.68929 8.91860 8.95816 9.05485 10.28735 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.002871 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.788161 B = 9749.920557 C =11018.509465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.575 4.575 3 C -0.148 4.148 4 S 2.423 3.577 5 O -0.930 6.930 6 O -0.929 6.929 7 C -0.632 4.632 8 C 0.134 3.866 9 N -0.742 5.742 10 C 0.513 3.487 11 O -0.506 6.506 12 C -0.066 4.066 13 C -0.185 4.185 14 C -0.080 4.080 15 C -0.242 4.242 16 C -0.105 4.105 17 C -0.162 4.162 18 C 0.130 3.870 19 C -0.461 4.461 20 H 0.075 0.925 21 C 0.078 3.922 22 N -0.788 5.788 23 Si 0.901 3.099 24 H -0.271 1.271 25 H -0.261 1.261 26 H -0.275 1.275 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.138 0.862 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.397 0.603 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.139 13.266 -13.555 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.685 4.685 3 C -0.206 4.206 4 S 2.603 3.397 5 O -0.927 6.927 6 O -0.926 6.926 7 C -0.760 4.760 8 C 0.009 3.991 9 N -0.399 5.399 10 C 0.300 3.700 11 O -0.378 6.378 12 C -0.106 4.106 13 C -0.187 4.187 14 C -0.098 4.098 15 C -0.262 4.262 16 C -0.123 4.123 17 C -0.182 4.182 18 C 0.128 3.872 19 C -0.490 4.490 20 H 0.093 0.907 21 C -0.140 4.140 22 N -0.413 5.413 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.185 1.185 26 H -0.200 1.200 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.156 0.844 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.013 12.099 -12.070 20.890 hybrid contribution 0.487 0.029 -1.767 1.834 sum -11.526 12.128 -13.838 21.712 Atomic orbital electron populations 1.21637 0.89753 1.03989 1.04742 1.30073 1.07264 1.09788 1.21360 1.21778 1.01655 0.92102 1.05066 1.08207 0.77860 0.76115 0.77540 1.93619 1.82940 1.29681 1.86465 1.93593 1.78133 1.75552 1.45285 1.30682 1.25615 1.11213 1.08457 1.20777 0.82683 1.00880 0.94769 1.46056 1.05193 1.59879 1.28783 1.21235 0.89450 0.77942 0.81373 1.90733 1.77217 1.37643 1.32159 1.20237 0.89640 1.00097 1.00616 1.18976 1.08749 0.95611 0.95361 1.20287 0.98802 0.96975 0.93720 1.20295 1.11550 0.95401 0.98917 1.20678 1.00307 0.93999 0.97333 1.21281 1.02491 0.99731 0.94662 1.17330 0.87293 0.90008 0.92559 1.19441 1.42753 0.91828 0.95019 0.90746 1.25847 0.92424 0.98798 0.96935 1.69837 1.33465 1.13269 1.24777 0.86422 0.79202 0.79506 0.82321 1.19652 1.18503 1.20027 0.90561 0.90025 0.90869 0.84441 0.90957 0.90202 0.90309 0.84185 0.84213 0.90123 0.90288 0.76966 0.90675 0.88937 0.89765 0.89680 0.89604 0.86575 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.19 37.16 0.34 -0.48 16 2 C -0.58 -3.12 3.35 -26.73 -0.09 -3.21 16 3 C -0.15 -0.59 8.90 37.16 0.33 -0.26 16 4 S 2.42 22.91 4.26 -107.50 -0.46 22.45 16 5 O -0.93 -12.64 18.10 -57.83 -1.05 -13.69 16 6 O -0.93 -11.81 18.06 -57.83 -1.04 -12.85 16 7 C -0.63 -4.96 5.31 37.16 0.20 -4.76 16 8 C 0.13 1.84 5.68 -4.04 -0.02 1.82 16 9 N -0.74 -10.74 5.56 -60.30 -0.33 -11.07 16 10 C 0.51 10.31 7.82 -10.99 -0.09 10.23 16 11 O -0.51 -12.98 16.03 5.56 0.09 -12.89 16 12 C -0.07 -1.27 5.35 -29.04 -0.16 -1.43 16 13 C -0.19 -4.47 4.43 -103.91 -0.46 -4.93 16 14 C -0.08 -1.85 9.66 -39.66 -0.38 -2.23 16 15 C -0.24 -5.71 10.05 -39.29 -0.39 -6.11 16 16 C -0.10 -2.59 10.02 -39.66 -0.40 -2.98 16 17 C -0.16 -4.38 8.68 -38.87 -0.34 -4.72 16 18 C 0.13 3.51 5.56 -106.82 -0.59 2.92 16 19 C -0.46 -12.15 8.46 -37.74 -0.32 -12.47 16 20 H 0.07 1.83 6.36 -52.48 -0.33 1.49 16 21 C 0.08 2.01 5.16 -17.34 -0.09 1.92 16 22 N -0.79 -21.37 10.98 55.55 0.61 -20.76 16 23 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.14 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.16 6.39 -51.93 -0.33 -0.17 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.14 0.66 6.77 -51.93 -0.35 0.30 16 35 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.40 4.02 8.47 -40.82 -0.35 3.68 16 39 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 40 H 0.09 1.68 6.48 -51.93 -0.34 1.34 16 41 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.12 3.21 6.23 -52.49 -0.33 2.89 16 45 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -38.21 386.04 -10.51 -48.72 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.65 Total: 6.97 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -2.46 Total: -26.71 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.27 Total: -31.84 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -2.00 Total: -39.44 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Atomic # 16 Polarization: 22.91 SS G_CDS: -0.46 Total: 22.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.21 -10.51 -48.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811555374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.048 kcal (2) G-P(sol) polarization free energy of solvation -38.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds