Wall clock time and date at job start Tue Mar 31 2020 22:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47376 * 2 1 4 4 H 1.09000 * 109.47073 * 185.73884 * 3 2 1 5 5 C 1.52996 * 109.46942 * 65.73726 * 3 2 1 6 6 C 1.50705 * 109.47244 * 64.99835 * 5 3 2 7 7 C 1.38255 * 120.00402 * 265.25510 * 6 5 3 8 8 C 1.38210 * 120.00339 * 180.27342 * 7 6 5 9 9 C 1.38260 * 119.99655 * 359.74856 * 8 7 6 10 10 C 1.38212 * 119.99837 * 359.97438 * 9 8 7 11 11 C 1.38220 * 119.99547 * 84.99947 * 6 5 3 12 12 C 1.50695 * 120.00246 * 0.02562 * 11 6 5 13 13 C 1.50699 * 109.46821 * 305.73811 * 3 2 1 14 14 O 1.21290 * 119.99858 * 117.57410 * 13 3 2 15 15 N 1.34778 * 120.00350 * 297.56393 * 13 3 2 16 16 S 1.65592 * 119.99884 * 174.99543 * 15 13 3 17 17 O 1.42111 * 104.27566 * 181.07520 * 16 15 13 18 18 O 1.42098 * 104.28227 * 308.92798 * 16 15 13 19 19 C 1.81403 * 104.45209 * 65.00482 * 16 15 13 20 20 C 1.50693 * 109.46992 * 179.97438 * 19 16 15 21 21 H 1.07997 * 120.00646 * 359.97438 * 20 19 16 22 22 C 1.37878 * 120.00020 * 179.97438 * 20 19 16 23 23 N 1.31514 * 120.00228 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99786 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47373 * 90.00021 * 24 22 20 26 26 H 1.48497 * 109.47067 * 209.99994 * 24 22 20 27 27 H 1.48506 * 109.47140 * 329.99894 * 24 22 20 28 28 H 1.09000 * 109.46513 * 300.81297 * 1 2 3 29 29 H 1.09004 * 109.47110 * 60.81003 * 1 2 3 30 30 H 1.08991 * 109.47505 * 180.81290 * 1 2 3 31 31 H 1.09006 * 109.47053 * 240.00459 * 2 1 3 32 32 H 1.08999 * 109.47294 * 120.00578 * 2 1 3 33 33 H 1.08999 * 109.47252 * 305.00089 * 5 3 2 34 34 H 1.08994 * 109.47330 * 184.99766 * 5 3 2 35 35 H 1.08008 * 119.99806 * 0.03861 * 7 6 5 36 36 H 1.07997 * 120.00299 * 179.76512 * 8 7 6 37 37 H 1.07997 * 120.00068 * 180.02562 * 9 8 7 38 38 H 1.08009 * 119.99578 * 180.02562 * 10 9 8 39 39 H 1.08999 * 109.46826 * 269.72918 * 12 11 6 40 40 H 1.08996 * 109.47074 * 149.72647 * 12 11 6 41 41 H 1.09001 * 109.47469 * 29.72380 * 12 11 6 42 42 H 0.96998 * 119.99616 * 354.99598 * 15 13 3 43 43 H 1.09002 * 109.46672 * 299.99824 * 19 16 15 44 44 H 1.08995 * 109.47302 * 59.99408 * 19 16 15 45 45 H 0.97006 * 120.00068 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1253 1.4442 -0.1028 5 6 1.6513 2.1209 1.3151 6 6 2.3641 1.4459 2.4585 7 6 1.7349 0.4399 3.1681 8 6 2.3865 -0.1752 4.2204 9 6 3.6696 0.2119 4.5600 10 6 4.3008 1.2136 3.8469 11 6 3.6490 1.8290 2.7943 12 6 4.3368 2.9219 2.0176 13 6 1.4251 2.1927 -1.1533 14 8 0.7072 3.1472 -0.9420 15 7 1.6730 1.8032 -2.4195 16 16 0.9009 2.5478 -3.6810 17 8 1.3814 1.8711 -4.8346 18 8 -0.4742 2.5036 -3.3256 19 6 1.5137 4.2548 -3.6428 20 6 0.8760 5.0424 -4.7581 21 1 0.1728 4.5641 -5.4236 22 6 1.1904 6.3740 -4.9289 23 7 0.6343 7.0613 -5.9025 24 14 2.4063 7.2017 -3.7774 25 1 3.7797 7.0635 -4.3251 26 1 2.0665 8.6417 -3.6508 27 1 2.3393 6.5579 -2.4408 28 1 -0.3632 0.5264 0.8826 29 1 -0.3633 0.5012 -0.8972 30 1 -0.3634 -1.0275 0.0146 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.5740 2.0408 1.4606 34 1 1.9359 3.1724 1.2795 35 1 0.7327 0.1374 2.9026 36 1 1.8936 -0.9584 4.7771 37 1 4.1790 -0.2690 5.3820 38 1 5.3033 1.5157 4.1120 39 1 4.8852 2.4846 1.1832 40 1 5.0305 3.4507 2.6711 41 1 3.5922 3.6207 1.6365 42 1 2.3038 1.0867 -2.5918 43 1 1.2611 4.7101 -2.6853 44 1 2.5961 4.2551 -3.7709 45 1 0.8558 7.9980 -6.0229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821047215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:10 Heat of formation + Delta-G solvation = -108.220335 kcal Electronic energy + Delta-G solvation = -28003.050711 eV Core-core repulsion = 24111.908259 eV Total energy + Delta-G solvation = -3891.142452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70392 -39.51675 -36.44314 -35.81815 -35.30915 -34.27108 -33.26000 -33.17786 -31.66657 -29.82161 -29.06695 -27.22742 -25.43265 -23.31350 -22.97819 -22.29747 -21.24770 -19.79115 -19.24128 -17.74832 -17.30183 -16.66312 -16.45388 -16.35884 -15.89772 -15.34158 -15.21053 -14.98231 -14.72833 -14.19950 -14.07670 -13.86304 -13.51213 -13.45224 -13.05494 -12.88339 -12.73267 -12.63923 -12.53715 -12.28463 -12.10237 -11.96729 -11.67551 -11.53370 -11.42625 -11.33181 -11.27730 -11.16982 -10.93019 -10.87353 -10.78560 -10.66690 -10.34043 -9.97870 -9.82790 -9.41964 -9.01076 -8.83729 -8.79348 -6.32344 -4.41650 0.84813 1.11394 1.15067 2.24830 3.05882 3.14809 3.23725 3.25492 3.50919 4.13068 4.22299 4.42074 4.50030 4.55408 4.64135 4.66689 4.76053 4.82086 4.86247 4.96595 5.05188 5.11073 5.15427 5.18548 5.28716 5.33227 5.38051 5.46803 5.53765 5.60377 5.70753 5.74310 5.81790 5.85304 5.93086 6.08870 6.16685 6.21897 6.25713 6.28667 6.32189 6.47802 6.78900 6.84373 7.16705 7.63168 7.98807 8.57870 9.22416 10.78605 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.003426 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.516261 B = 8171.366994 C = 9426.853059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.104 4.104 4 H 0.105 0.895 5 C -0.073 4.073 6 C -0.077 4.077 7 C -0.110 4.110 8 C -0.126 4.126 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.080 4.080 12 C -0.125 4.125 13 C 0.539 3.461 14 O -0.488 6.488 15 N -1.062 6.062 16 S 2.577 3.423 17 O -0.961 6.961 18 O -0.945 6.945 19 C -0.459 4.459 20 C -0.533 4.533 21 H 0.086 0.914 22 C 0.091 3.909 23 N -0.879 5.879 24 Si 0.881 3.119 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.261 1.261 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.426 0.574 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 -14.796 20.658 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.156 4.156 3 C -0.127 4.127 4 H 0.123 0.877 5 C -0.111 4.111 6 C -0.077 4.077 7 C -0.128 4.128 8 C -0.144 4.144 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.080 4.080 12 C -0.181 4.181 13 C 0.325 3.675 14 O -0.359 6.359 15 N -0.822 5.822 16 S 2.678 3.322 17 O -0.952 6.952 18 O -0.935 6.935 19 C -0.594 4.594 20 C -0.572 4.572 21 H 0.104 0.896 22 C -0.116 4.116 23 N -0.515 5.515 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.260 0.740 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.836 -14.377 20.164 25.975 hybrid contribution 1.400 0.493 0.661 1.625 sum 9.237 -13.884 20.825 26.679 Atomic orbital electron populations 1.21969 0.94993 1.02239 1.03129 1.21584 0.97033 0.93564 1.03385 1.21462 1.01980 0.96497 0.92772 0.87677 1.20572 1.01228 0.99704 0.89570 1.19700 0.94016 0.96793 0.97172 1.21101 1.00061 0.95987 0.95639 1.21115 0.95271 1.00334 0.97698 1.21110 0.95356 0.97704 0.99860 1.21019 0.99824 0.97028 0.95939 1.19815 0.94054 0.97681 0.96475 1.20936 1.00659 0.96698 0.99802 1.20507 0.79575 0.83483 0.83931 1.90901 1.34507 1.26051 1.84411 1.55530 1.56706 1.48501 1.21493 1.06321 0.75043 0.78734 0.72146 1.93544 1.81722 1.73620 1.46298 1.93545 1.31013 1.87061 1.81862 1.28109 1.07032 1.16504 1.07792 1.20027 1.28556 0.96194 1.12445 0.89564 1.24854 0.95435 0.96477 0.94867 1.69861 1.41969 1.09492 1.30142 0.86738 0.81444 0.79218 0.81927 1.19603 1.20480 1.18490 0.91906 0.91910 0.92120 0.91156 0.89985 0.89455 0.89339 0.85883 0.86257 0.86354 0.86243 0.90956 0.91541 0.90699 0.73966 0.88266 0.90238 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.36 37.16 0.35 -1.37 16 2 C -0.12 -1.04 5.44 -26.73 -0.15 -1.19 16 3 C -0.10 -1.07 2.49 -91.77 -0.23 -1.30 16 4 H 0.11 0.85 7.94 -51.93 -0.41 0.44 16 5 C -0.07 -0.77 3.53 -27.88 -0.10 -0.86 16 6 C -0.08 -0.72 4.58 -104.62 -0.48 -1.19 16 7 C -0.11 -0.94 8.18 -39.59 -0.32 -1.26 16 8 C -0.13 -0.99 10.05 -39.58 -0.40 -1.38 16 9 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 10 C -0.12 -0.98 9.70 -39.59 -0.38 -1.37 16 11 C -0.08 -0.72 5.88 -104.63 -0.62 -1.33 16 12 C -0.12 -1.00 9.41 36.00 0.34 -0.66 16 13 C 0.54 7.89 5.34 -10.99 -0.06 7.83 16 14 O -0.49 -9.07 13.95 -9.86 -0.14 -9.20 16 15 N -1.06 -15.45 5.52 31.22 0.17 -15.28 16 16 S 2.58 53.46 5.02 -107.50 -0.54 52.92 16 17 O -0.96 -21.37 18.08 -57.54 -1.04 -22.41 16 18 O -0.94 -22.67 17.16 -64.28 -1.10 -23.77 16 19 C -0.46 -10.62 4.69 36.00 0.17 -10.45 16 20 C -0.53 -15.16 9.68 -34.44 -0.33 -15.50 16 21 H 0.09 2.63 7.96 -52.49 -0.42 2.21 16 22 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 23 N -0.88 -26.36 13.96 55.43 0.77 -25.58 16 24 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 28 H 0.06 0.62 6.19 -51.93 -0.32 0.30 16 29 H 0.06 0.84 7.09 -51.93 -0.37 0.47 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 32 H 0.08 0.63 6.15 -51.93 -0.32 0.31 16 33 H 0.09 0.96 6.27 -51.93 -0.33 0.63 16 34 H 0.09 0.99 6.01 -51.93 -0.31 0.68 16 35 H 0.12 0.92 7.80 -52.48 -0.41 0.52 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 41 H 0.07 0.66 6.02 -51.93 -0.31 0.34 16 42 H 0.43 4.34 8.69 -34.47 -0.30 4.04 16 43 H 0.10 2.28 6.06 -51.92 -0.31 1.97 16 44 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -36.26 374.38 -9.93 -46.19 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.32 Total: 4.28 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: -2.70 Total: -28.89 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.95 Total: -40.86 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -2.28 Total: -55.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 16 Polarization: 53.46 SS G_CDS: -0.54 Total: 52.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.26 -9.93 -46.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821047215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.031 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds