Wall clock time and date at job start Tue Mar 31 2020 22:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47333 * 2 1 4 4 H 1.08994 * 109.47747 * 305.76132 * 3 2 1 5 5 C 1.53004 * 109.46807 * 65.76034 * 3 2 1 6 6 C 1.50697 * 109.47027 * 186.74428 * 5 3 2 7 7 C 1.38259 * 119.99886 * 257.85260 * 6 5 3 8 8 C 1.38217 * 119.99843 * 179.79318 * 7 6 5 9 9 C 1.38250 * 119.99870 * 0.45778 * 8 7 6 10 10 C 1.38215 * 120.00407 * 359.77521 * 9 8 7 11 11 C 1.38210 * 120.00193 * 78.12973 * 6 5 3 12 12 C 1.50703 * 119.99860 * 359.97431 * 11 6 5 13 13 C 1.50703 * 109.47506 * 185.75574 * 3 2 1 14 14 O 1.21271 * 120.00387 * 240.00451 * 13 3 2 15 15 N 1.34778 * 119.99316 * 60.00377 * 13 3 2 16 16 S 1.65603 * 119.99660 * 179.97438 * 15 13 3 17 17 O 1.42105 * 104.27651 * 181.07384 * 16 15 13 18 18 O 1.42102 * 104.27627 * 308.92756 * 16 15 13 19 19 C 1.81395 * 104.44765 * 65.00230 * 16 15 13 20 20 C 1.50707 * 109.47016 * 180.02562 * 19 16 15 21 21 H 1.08001 * 120.00073 * 359.97438 * 20 19 16 22 22 C 1.37878 * 119.99857 * 180.02562 * 20 19 16 23 23 N 1.31511 * 120.00274 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99598 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47061 * 59.99977 * 24 22 20 26 26 H 1.48503 * 109.47035 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47655 * 299.99760 * 24 22 20 28 28 H 1.08992 * 109.47331 * 183.25233 * 1 2 3 29 29 H 1.09002 * 109.46734 * 303.24725 * 1 2 3 30 30 H 1.08994 * 109.47594 * 63.24297 * 1 2 3 31 31 H 1.08998 * 109.46887 * 240.00653 * 2 1 3 32 32 H 1.08995 * 109.47455 * 120.00260 * 2 1 3 33 33 H 1.09008 * 109.47033 * 66.74749 * 5 3 2 34 34 H 1.09000 * 109.47227 * 306.74492 * 5 3 2 35 35 H 1.07993 * 120.00384 * 359.97438 * 7 6 5 36 36 H 1.08002 * 120.00056 * 180.25684 * 8 7 6 37 37 H 1.08005 * 120.00277 * 179.79575 * 9 8 7 38 38 H 1.07993 * 120.00652 * 179.97438 * 10 9 8 39 39 H 1.09002 * 109.46633 * 94.67997 * 12 11 6 40 40 H 1.08990 * 109.47495 * 214.67784 * 12 11 6 41 41 H 1.08999 * 109.46973 * 334.68539 * 12 11 6 42 42 H 0.96995 * 120.00456 * 0.02562 * 15 13 3 43 43 H 1.08996 * 109.47338 * 299.99299 * 19 16 15 44 44 H 1.08999 * 109.47853 * 60.00135 * 19 16 15 45 45 H 0.96998 * 119.99791 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9853 -0.8338 5 6 1.6516 2.1207 1.3154 6 6 2.0062 3.5839 1.2499 7 6 3.1403 4.0496 1.8890 8 6 3.4678 5.3909 1.8254 9 6 2.6562 6.2684 1.1306 10 6 1.5199 5.8037 0.4958 11 6 1.1946 4.4613 0.5559 12 6 -0.0447 3.9546 -0.1360 13 6 3.5403 1.4449 -0.1425 14 8 4.2308 1.9402 0.7227 15 7 4.1145 0.8966 -1.2316 16 16 5.7631 0.8997 -1.3885 17 8 5.9969 0.2748 -2.6432 18 8 6.1339 2.2530 -1.1638 19 6 6.3488 -0.1543 -0.0334 20 6 7.8535 -0.2301 -0.0703 21 1 8.4025 0.3022 -0.8330 22 6 8.5292 -0.9799 0.8690 23 7 7.8607 -1.6285 1.7974 24 14 10.3943 -1.0745 0.8227 25 1 10.9629 0.2889 0.9753 26 1 10.8738 -1.9373 1.9322 27 1 10.8288 -1.6496 -0.4755 28 1 -0.3633 -1.0259 0.0583 29 1 -0.3633 0.5634 0.8595 30 1 -0.3634 0.4626 -0.9175 31 1 1.8932 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1913 1.6526 2.1387 34 1 0.5789 2.0136 1.4765 35 1 3.7719 3.3650 2.4354 36 1 4.3560 5.7541 2.3211 37 1 2.9103 7.3171 1.0836 38 1 0.8856 6.4892 -0.0466 39 1 -0.9048 4.0797 0.5218 40 1 -0.2046 4.5190 -1.0545 41 1 0.0790 2.8984 -0.3753 42 1 3.5622 0.5007 -1.9237 43 1 6.0301 0.2683 0.9194 44 1 5.9314 -1.1550 -0.1449 45 1 8.3362 -2.1557 2.4584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821047216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:14 Heat of formation + Delta-G solvation = -110.577858 kcal Electronic energy + Delta-G solvation = -28351.634768 eV Core-core repulsion = 24460.390086 eV Total energy + Delta-G solvation = -3891.244681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.50285 -38.99630 -36.31678 -35.77697 -35.14626 -34.11236 -33.35742 -32.74571 -31.74422 -29.06764 -28.76235 -26.94304 -25.41531 -23.56278 -22.51661 -21.92728 -20.87387 -20.12195 -19.15075 -17.74127 -17.22603 -16.49367 -16.38898 -15.64882 -15.45788 -15.20955 -14.79071 -14.58450 -14.40744 -14.34921 -14.24750 -13.88005 -13.23241 -13.01115 -12.93233 -12.67555 -12.52175 -12.31145 -12.14464 -12.11227 -11.98795 -11.82028 -11.65557 -11.47582 -11.29652 -11.27312 -11.16949 -10.89917 -10.88656 -10.72265 -10.65659 -10.57126 -10.41579 -9.91838 -9.69778 -9.15144 -8.70652 -8.54194 -8.43130 -6.33548 -4.44595 1.06000 1.47973 1.60111 2.46153 3.21035 3.24187 3.26663 3.31422 3.89307 4.20930 4.33630 4.55588 4.60341 4.68225 4.87320 4.94449 4.98583 5.05314 5.08129 5.10867 5.22571 5.25393 5.30313 5.33413 5.38641 5.48402 5.50310 5.62105 5.69188 5.77263 5.81427 5.83268 5.94092 5.98793 6.08549 6.24102 6.33373 6.58712 6.62511 6.74774 6.76229 6.85655 7.03869 7.21107 7.41296 7.73137 7.85754 8.56170 9.22683 10.78145 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003735 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.477037 B = 7495.490839 C = 8210.703524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.107 4.107 4 H 0.106 0.894 5 C -0.066 4.066 6 C -0.089 4.089 7 C -0.075 4.075 8 C -0.127 4.127 9 C -0.120 4.120 10 C -0.131 4.131 11 C -0.090 4.090 12 C -0.120 4.120 13 C 0.535 3.465 14 O -0.479 6.479 15 N -1.061 6.061 16 S 2.552 3.448 17 O -0.972 6.972 18 O -0.952 6.952 19 C -0.402 4.402 20 C -0.536 4.536 21 H 0.069 0.931 22 C 0.079 3.921 23 N -0.877 5.877 24 Si 0.905 3.095 25 H -0.269 1.269 26 H -0.281 1.281 27 H -0.269 1.269 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.422 0.578 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.130 6.565 -1.232 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.130 4.130 4 H 0.123 0.877 5 C -0.104 4.104 6 C -0.089 4.089 7 C -0.093 4.093 8 C -0.146 4.146 9 C -0.139 4.139 10 C -0.149 4.149 11 C -0.090 4.090 12 C -0.176 4.176 13 C 0.321 3.679 14 O -0.349 6.349 15 N -0.821 5.821 16 S 2.654 3.346 17 O -0.963 6.963 18 O -0.942 6.942 19 C -0.539 4.539 20 C -0.575 4.575 21 H 0.087 0.913 22 C -0.128 4.128 23 N -0.513 5.513 24 Si 0.731 3.269 25 H -0.194 1.194 26 H -0.206 1.206 27 H -0.194 1.194 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.151 0.849 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.256 0.744 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.185 7.333 -1.122 19.640 hybrid contribution 0.616 -0.592 0.004 0.854 sum -17.569 6.742 -1.118 18.851 Atomic orbital electron populations 1.21846 0.94788 1.02242 1.02160 1.21583 0.96787 0.93848 1.03780 1.21587 0.91761 0.98716 1.00969 0.87655 1.20548 1.01799 0.91492 0.96538 1.19630 0.95640 0.94831 0.98771 1.21267 0.95132 0.95228 0.97627 1.21188 0.99531 0.93852 0.99980 1.21085 0.95231 0.99431 0.98105 1.20878 0.97863 0.94911 1.01261 1.19711 0.96917 0.93514 0.98865 1.20914 0.95121 1.01794 0.99790 1.20487 0.91692 0.75454 0.80283 1.90867 1.64646 1.40425 1.38959 1.55491 1.31143 1.66384 1.29085 1.07138 0.71945 0.77234 0.78253 1.93515 1.82408 1.78693 1.41661 1.93534 1.79623 1.34080 1.86956 1.27583 1.06658 1.08488 1.11189 1.20248 0.87232 1.33615 1.16414 0.91277 1.24902 0.99640 0.94025 0.94242 1.69941 1.36497 1.29536 1.15303 0.86419 0.83447 0.78796 0.78237 1.19362 1.20643 1.19396 0.92143 0.92043 0.92481 0.90891 0.90421 0.89678 0.89727 0.84930 0.86271 0.86606 0.86663 0.91381 0.91800 0.91092 0.74374 0.88353 0.89817 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.76 37.16 0.36 -0.64 16 2 C -0.12 -1.08 5.35 -26.73 -0.14 -1.22 16 3 C -0.11 -1.19 1.79 -91.77 -0.16 -1.36 16 4 H 0.11 1.01 6.38 -51.93 -0.33 0.68 16 5 C -0.07 -0.74 3.75 -27.88 -0.10 -0.84 16 6 C -0.09 -1.18 4.64 -104.63 -0.49 -1.67 16 7 C -0.07 -1.14 7.98 -39.58 -0.32 -1.46 16 8 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 9 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 10 C -0.13 -1.57 9.72 -39.58 -0.38 -1.95 16 11 C -0.09 -1.07 5.83 -104.62 -0.61 -1.68 16 12 C -0.12 -1.01 9.25 36.01 0.33 -0.68 16 13 C 0.54 8.58 6.65 -10.98 -0.07 8.51 16 14 O -0.48 -9.41 10.87 -11.56 -0.13 -9.53 16 15 N -1.06 -17.03 5.46 31.22 0.17 -16.86 16 16 S 2.55 55.87 5.03 -107.50 -0.54 55.33 16 17 O -0.97 -22.57 18.08 -57.54 -1.04 -23.61 16 18 O -0.95 -24.00 17.04 -64.79 -1.10 -25.10 16 19 C -0.40 -9.98 5.64 36.01 0.20 -9.78 16 20 C -0.54 -15.06 9.13 -34.44 -0.31 -15.38 16 21 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 22 C 0.08 2.19 5.46 -17.82 -0.10 2.09 16 23 N -0.88 -24.94 13.29 55.43 0.74 -24.20 16 24 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.59 7.41 -51.93 -0.38 0.20 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.03 7.73 -51.92 -0.40 0.63 16 34 H 0.08 0.72 5.42 -51.93 -0.28 0.44 16 35 H 0.13 2.17 7.03 -52.49 -0.37 1.80 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 41 H 0.07 0.53 4.87 -51.93 -0.25 0.28 16 42 H 0.42 4.97 8.14 -34.47 -0.28 4.69 16 43 H 0.10 2.53 7.19 -51.93 -0.37 2.16 16 44 H 0.08 2.00 8.14 -51.92 -0.42 1.58 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -35.96 375.17 -10.21 -46.16 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.35 Total: 6.25 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -2.59 Total: -30.24 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.91 Total: -41.06 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -2.27 Total: -58.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 55.87 SS G_CDS: -0.54 Total: 55.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.96 -10.21 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821047216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.417 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds