Wall clock time and date at job start Tue Mar 31 2020 23:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46914 * 2 1 4 4 O 1.42899 * 109.46944 * 119.99793 * 2 1 3 5 5 C 1.50692 * 109.47172 * 239.99708 * 2 1 3 6 6 C 1.38235 * 120.00052 * 100.00245 * 5 2 1 7 7 C 1.38233 * 120.00420 * 180.02562 * 6 5 2 8 8 C 1.38231 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00365 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47171 * 89.99676 * 9 8 7 11 11 S 1.65599 * 119.99648 * 165.27545 * 10 9 8 12 12 O 1.42110 * 104.27597 * 180.79661 * 11 10 9 13 13 O 1.42098 * 104.28200 * 308.65315 * 11 10 9 14 14 C 1.81403 * 104.45003 * 64.72875 * 11 10 9 15 15 C 1.52997 * 109.47124 * 173.80420 * 14 11 10 16 16 C 1.50700 * 115.54884 * 65.19552 * 15 14 11 17 17 H 1.08004 * 120.00091 * 264.77971 * 16 15 14 18 18 C 1.37879 * 120.00026 * 84.78402 * 16 15 14 19 19 N 1.31516 * 119.99983 * 352.23228 * 18 16 15 20 20 Si 1.86802 * 120.00072 * 172.23252 * 18 16 15 21 21 H 1.48497 * 109.47048 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47087 * 120.00078 * 20 18 16 23 23 H 1.48503 * 109.46948 * 239.99695 * 20 18 16 24 24 C 1.53003 * 117.50167 * 279.52594 * 15 14 11 25 25 C 1.53002 * 117.50015 * 210.86444 * 15 14 11 26 26 C 1.38236 * 119.99822 * 0.25365 * 8 7 6 27 27 C 1.38231 * 120.00363 * 280.02189 * 5 2 1 28 28 H 1.09005 * 109.46959 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46765 * 299.99843 * 1 2 3 30 30 H 1.08992 * 109.46916 * 60.00407 * 1 2 3 31 31 H 0.96700 * 114.00396 * 60.00323 * 4 2 1 32 32 H 1.08001 * 119.99901 * 359.97438 * 6 5 2 33 33 H 1.07997 * 120.00106 * 179.97438 * 7 6 5 34 34 H 1.09006 * 109.46804 * 329.99483 * 9 8 7 35 35 H 1.08995 * 109.47057 * 210.00601 * 9 8 7 36 36 H 0.97002 * 120.00143 * 345.00445 * 10 9 8 37 37 H 1.08997 * 109.47169 * 293.80869 * 14 11 10 38 38 H 1.09005 * 109.46878 * 53.80995 * 14 11 10 39 39 H 0.97003 * 120.00122 * 185.02211 * 19 18 16 40 40 H 1.08997 * 117.49767 * 359.97438 * 24 15 14 41 41 H 1.08999 * 117.49842 * 145.02264 * 24 15 14 42 42 H 1.09001 * 117.49716 * 214.98342 * 25 15 14 43 43 H 1.09001 * 117.49794 * 359.97438 * 25 15 14 44 44 H 1.08002 * 120.00286 * 179.72144 * 26 8 7 45 45 H 1.08002 * 119.99832 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 2.4588 0.0193 -2.3242 7 6 2.9191 -0.6323 -3.4531 8 6 2.9535 -2.0137 -3.4880 9 6 3.4548 -2.7242 -4.7188 10 7 4.9001 -2.9353 -4.6062 11 16 5.6628 -3.9990 -5.6206 12 8 7.0238 -3.9568 -5.2136 13 8 4.9023 -5.1944 -5.5114 14 6 5.4690 -3.2697 -7.2702 15 6 6.2696 -4.0865 -8.2863 16 6 5.7947 -5.5003 -8.5025 17 1 6.2510 -6.3127 -7.9562 18 6 4.7779 -5.7568 -9.3977 19 7 4.1196 -4.7602 -9.9482 20 14 4.3354 -7.5197 -9.8287 21 1 5.2194 -8.4490 -9.0802 22 1 2.9200 -7.7786 -9.4617 23 1 4.5156 -7.7329 -11.2872 24 6 7.7747 -3.8257 -8.3740 25 6 6.8474 -3.3432 -9.4924 26 6 2.5227 -2.7436 -2.3959 27 6 2.0664 -2.0919 -1.2654 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.7211 -1.5952 1.2330 32 1 2.4316 1.0987 -2.2971 33 1 3.2519 -0.0621 -4.3078 34 1 3.2436 -2.1178 -5.5997 35 1 2.9529 -3.6872 -4.8121 36 1 5.4108 -2.4492 -3.9401 37 1 4.4152 -3.2757 -7.5486 38 1 5.8360 -2.2433 -7.2591 39 1 3.3576 -4.9399 -10.5210 40 1 8.1944 -3.0717 -7.7080 41 1 8.4213 -4.6765 -8.5884 42 1 6.8844 -3.8769 -10.4421 43 1 6.6568 -2.2723 -9.5621 44 1 2.5453 -3.8230 -2.4248 45 1 1.7325 -2.6621 -0.4111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830609371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:50 Heat of formation + Delta-G solvation = -82.766361 kcal Electronic energy + Delta-G solvation = -27036.058683 eV Core-core repulsion = 23146.019998 eV Total energy + Delta-G solvation = -3890.038684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05954 -37.62558 -36.76594 -36.25887 -35.20686 -34.94378 -32.13053 -32.05501 -31.12755 -29.74133 -28.17848 -25.89943 -25.46290 -23.35345 -22.77072 -21.22403 -20.90663 -19.74705 -18.67832 -17.88059 -17.08502 -16.55497 -16.25409 -16.07783 -15.37675 -15.23017 -15.02353 -14.73546 -14.61972 -14.30616 -13.86067 -13.80495 -13.69556 -13.50540 -13.15694 -12.96572 -12.61751 -12.39615 -11.97393 -11.91781 -11.83802 -11.51394 -11.31403 -11.23897 -11.15282 -11.06432 -11.01284 -10.95975 -10.58199 -10.47516 -10.46315 -10.13213 -9.74069 -9.26012 -9.12788 -8.96587 -8.87180 -8.58589 -8.10423 -6.15719 -4.25937 0.86891 1.19002 1.20757 3.27378 3.31863 3.35410 3.42815 3.67136 4.06398 4.25150 4.36135 4.49358 4.52013 4.65648 4.70156 4.79376 4.83658 5.00838 5.12541 5.17902 5.19854 5.22174 5.31275 5.40384 5.47276 5.58092 5.64076 5.68165 5.79279 5.86533 5.95323 6.04142 6.18725 6.25225 6.28929 6.35917 6.44521 6.59685 6.71327 6.75173 6.97134 7.20278 7.20532 7.26920 7.37995 7.79257 8.19133 8.80020 9.45260 10.91964 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.002611 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.392817 B =10719.335381 C =11163.236402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.143 3.857 3 H 0.106 0.894 4 O -0.558 6.558 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.101 4.101 8 C -0.089 4.089 9 C 0.155 3.845 10 N -1.129 6.129 11 S 2.606 3.394 12 O -0.973 6.973 13 O -0.950 6.950 14 C -0.554 4.554 15 C 0.043 3.957 16 C -0.515 4.515 17 H 0.069 0.931 18 C 0.081 3.919 19 N -0.875 5.875 20 Si 0.892 3.108 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.283 1.283 24 C -0.208 4.208 25 C -0.141 4.141 26 C -0.096 4.096 27 C -0.116 4.116 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.375 0.625 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.410 0.590 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.129 0.871 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 11.370 15.289 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 H 0.124 0.876 4 O -0.364 6.364 5 C -0.118 4.118 6 C -0.132 4.132 7 C -0.119 4.119 8 C -0.091 4.091 9 C 0.029 3.971 10 N -0.886 5.886 11 S 2.704 3.296 12 O -0.964 6.964 13 O -0.940 6.940 14 C -0.687 4.687 15 C 0.040 3.960 16 C -0.552 4.552 17 H 0.087 0.913 18 C -0.124 4.124 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.209 1.209 24 C -0.245 4.245 25 C -0.181 4.181 26 C -0.115 4.115 27 C -0.134 4.134 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.243 0.757 37 H 0.151 0.849 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.147 0.853 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.070 11.062 15.377 20.219 hybrid contribution -0.756 -0.539 -0.691 1.157 sum -7.826 10.522 14.686 19.689 Atomic orbital electron populations 1.22492 0.95395 1.02974 1.02941 1.20810 0.93020 0.95950 0.81773 0.87619 1.86623 1.77349 1.29248 1.43196 1.20560 1.00219 0.94424 0.96602 1.20942 0.99420 0.99719 0.93077 1.21135 0.98674 0.93833 0.98305 1.19940 0.99527 0.93757 0.95873 1.20178 0.80835 1.00941 0.95171 1.56056 1.15412 1.64734 1.52374 1.05172 0.73446 0.74405 0.76601 1.93510 1.34581 1.86681 1.81585 1.93530 1.71562 1.43178 1.85689 1.29978 1.11211 1.08473 1.19049 1.18285 0.88374 0.94720 0.94579 1.20575 1.20113 0.89924 1.24596 0.91282 1.24958 0.95460 0.97373 0.94564 1.69986 1.18726 1.30837 1.31465 0.86513 0.78676 0.84817 0.78059 1.19226 1.20624 1.20863 1.23200 0.94736 1.02853 1.03754 1.22554 1.03595 0.97623 0.94280 1.21160 0.97332 1.00453 0.92522 1.20818 1.00707 0.93625 0.98204 0.92044 0.91480 0.91240 0.77735 0.85864 0.85418 0.90832 0.89188 0.75739 0.84851 0.88220 0.92790 0.90671 0.89516 0.89588 0.91541 0.85290 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 9.51 37.16 0.35 -0.72 16 2 C 0.14 1.07 3.83 -27.88 -0.11 0.96 16 3 H 0.11 0.74 8.00 -51.93 -0.42 0.32 16 4 O -0.56 -4.72 13.19 -35.23 -0.46 -5.18 16 5 C -0.12 -1.04 4.97 -104.63 -0.52 -1.56 16 6 C -0.11 -1.02 9.67 -39.58 -0.38 -1.40 16 7 C -0.10 -1.00 9.70 -39.59 -0.38 -1.39 16 8 C -0.09 -1.02 5.28 -104.63 -0.55 -1.57 16 9 C 0.15 2.02 6.25 -5.20 -0.03 1.98 16 10 N -1.13 -16.56 5.88 -11.66 -0.07 -16.63 16 11 S 2.61 51.62 5.19 -107.50 -0.56 51.06 16 12 O -0.97 -21.26 18.08 -57.54 -1.04 -22.30 16 13 O -0.95 -22.16 17.18 -57.54 -0.99 -23.15 16 14 C -0.55 -11.32 5.92 37.16 0.22 -11.10 16 15 C 0.04 1.03 1.32 -155.66 -0.21 0.82 16 16 C -0.51 -13.96 8.18 -34.44 -0.28 -14.24 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C 0.08 2.20 5.38 -17.82 -0.10 2.10 16 19 N -0.87 -23.70 12.98 55.43 0.72 -22.98 16 20 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.21 -4.54 9.96 -26.69 -0.27 -4.81 16 25 C -0.14 -3.19 9.49 -26.69 -0.25 -3.44 16 26 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 27 C -0.12 -1.06 9.32 -39.58 -0.37 -1.43 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.37 1.99 7.51 45.56 0.34 2.34 16 32 H 0.12 0.84 8.04 -52.49 -0.42 0.42 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.09 1.25 7.65 -51.93 -0.40 0.85 16 36 H 0.41 5.29 8.61 -34.47 -0.30 4.99 16 37 H 0.13 2.80 8.14 -51.93 -0.42 2.37 16 38 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 39 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 0.80 6.79 -52.49 -0.36 0.44 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -33.80 392.01 -10.93 -44.74 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.16 Total: 9.53 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -3.26 Total: -37.21 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.65 Total: -39.60 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -2.49 Total: -50.63 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 51.62 SS G_CDS: -0.56 Total: 51.06 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.80 -10.93 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830609371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.028 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds