Wall clock time and date at job start Tue Mar 31 2020 23:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46914 * 2 1 4 4 O 1.42899 * 109.46944 * 119.99793 * 2 1 3 5 5 C 1.50692 * 109.47172 * 239.99708 * 2 1 3 6 6 C 1.38235 * 120.00052 * 100.00245 * 5 2 1 7 7 C 1.38233 * 120.00420 * 180.02562 * 6 5 2 8 8 C 1.38231 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00365 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47171 * 89.99676 * 9 8 7 11 11 S 1.65599 * 119.99648 * 165.27545 * 10 9 8 12 12 O 1.42110 * 104.27597 * 180.79661 * 11 10 9 13 13 O 1.42098 * 104.28200 * 308.65315 * 11 10 9 14 14 C 1.81403 * 104.45003 * 64.72875 * 11 10 9 15 15 C 1.52997 * 109.47124 * 173.80420 * 14 11 10 16 16 C 1.50700 * 115.54884 * 65.19552 * 15 14 11 17 17 H 1.08004 * 120.00091 * 264.77971 * 16 15 14 18 18 C 1.37879 * 120.00026 * 84.78402 * 16 15 14 19 19 N 1.31516 * 119.99983 * 352.23228 * 18 16 15 20 20 Si 1.86802 * 120.00072 * 172.23252 * 18 16 15 21 21 H 1.48497 * 109.47048 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47087 * 120.00078 * 20 18 16 23 23 H 1.48503 * 109.46948 * 239.99695 * 20 18 16 24 24 C 1.53003 * 117.50167 * 279.52594 * 15 14 11 25 25 C 1.53002 * 117.50015 * 210.86444 * 15 14 11 26 26 C 1.38236 * 119.99822 * 0.25365 * 8 7 6 27 27 C 1.38231 * 120.00363 * 280.02189 * 5 2 1 28 28 H 1.09005 * 109.46959 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46765 * 299.99843 * 1 2 3 30 30 H 1.08992 * 109.46916 * 60.00407 * 1 2 3 31 31 H 0.96700 * 114.00396 * 60.00323 * 4 2 1 32 32 H 1.08001 * 119.99901 * 359.97438 * 6 5 2 33 33 H 1.07997 * 120.00106 * 179.97438 * 7 6 5 34 34 H 1.09006 * 109.46804 * 329.99483 * 9 8 7 35 35 H 1.08995 * 109.47057 * 210.00601 * 9 8 7 36 36 H 0.97002 * 120.00143 * 345.00445 * 10 9 8 37 37 H 1.08997 * 109.47169 * 293.80869 * 14 11 10 38 38 H 1.09005 * 109.46878 * 53.80995 * 14 11 10 39 39 H 0.97003 * 120.00122 * 185.02211 * 19 18 16 40 40 H 1.08997 * 117.49767 * 359.97438 * 24 15 14 41 41 H 1.08999 * 117.49842 * 145.02264 * 24 15 14 42 42 H 1.09001 * 117.49716 * 214.98342 * 25 15 14 43 43 H 1.09001 * 117.49794 * 359.97438 * 25 15 14 44 44 H 1.08002 * 120.00286 * 179.72144 * 26 8 7 45 45 H 1.08002 * 119.99832 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 2.4588 0.0193 -2.3242 7 6 2.9191 -0.6323 -3.4531 8 6 2.9535 -2.0137 -3.4880 9 6 3.4548 -2.7242 -4.7188 10 7 4.9001 -2.9353 -4.6062 11 16 5.6628 -3.9990 -5.6206 12 8 7.0238 -3.9568 -5.2136 13 8 4.9023 -5.1944 -5.5114 14 6 5.4690 -3.2697 -7.2702 15 6 6.2696 -4.0865 -8.2863 16 6 5.7947 -5.5003 -8.5025 17 1 6.2510 -6.3127 -7.9562 18 6 4.7779 -5.7568 -9.3977 19 7 4.1196 -4.7602 -9.9482 20 14 4.3354 -7.5197 -9.8287 21 1 5.2194 -8.4490 -9.0802 22 1 2.9200 -7.7786 -9.4617 23 1 4.5156 -7.7329 -11.2872 24 6 7.7747 -3.8257 -8.3740 25 6 6.8474 -3.3432 -9.4924 26 6 2.5227 -2.7436 -2.3959 27 6 2.0664 -2.0919 -1.2654 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.7211 -1.5952 1.2330 32 1 2.4316 1.0987 -2.2971 33 1 3.2519 -0.0621 -4.3078 34 1 3.2436 -2.1178 -5.5997 35 1 2.9529 -3.6872 -4.8121 36 1 5.4108 -2.4492 -3.9401 37 1 4.4152 -3.2757 -7.5486 38 1 5.8360 -2.2433 -7.2591 39 1 3.3576 -4.9399 -10.5210 40 1 8.1944 -3.0717 -7.7080 41 1 8.4213 -4.6765 -8.5884 42 1 6.8844 -3.8769 -10.4421 43 1 6.6568 -2.2723 -9.5621 44 1 2.5453 -3.8230 -2.4248 45 1 1.7325 -2.6621 -0.4111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830609371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:49 Heat of formation + Delta-G solvation = -106.819002 kcal Electronic energy + Delta-G solvation = -27037.101683 eV Core-core repulsion = 23146.019998 eV Total energy + Delta-G solvation = -3891.081685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.76618 -38.56259 -38.32973 -37.91931 -36.80108 -36.07944 -34.08130 -32.86886 -31.84473 -30.44550 -29.84414 -27.48909 -26.76410 -24.05596 -23.48862 -22.98605 -21.66579 -21.48552 -20.25040 -18.70858 -18.39972 -18.29167 -17.41220 -17.00886 -16.72283 -16.69655 -16.18883 -15.97477 -15.73012 -15.43460 -15.36571 -14.90709 -14.59697 -14.39912 -14.17045 -13.95379 -13.74830 -13.63887 -13.53824 -13.12384 -12.95655 -12.90456 -12.89494 -12.85255 -12.76649 -12.44123 -12.38557 -12.20959 -12.04127 -11.91097 -11.76335 -11.54166 -11.08678 -10.87077 -10.56736 -10.51900 -9.87900 -9.85353 -9.62173 -8.19421 -6.33551 -0.54633 0.28420 0.46780 1.36822 1.40436 1.51395 2.05966 2.39786 2.78381 2.94668 3.07775 3.39001 3.44643 3.54577 3.61205 3.79746 3.85579 3.98609 4.08481 4.18266 4.27276 4.31815 4.43357 4.44530 4.51923 4.54134 4.60524 4.71307 4.83085 4.84565 4.90325 4.98602 5.00536 5.01513 5.14955 5.22048 5.25086 5.42677 5.47835 5.59517 5.60812 5.66110 5.72332 6.02878 6.12154 6.23234 6.72538 6.75881 7.38600 8.87659 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.002611 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.392817 B =10719.335381 C =11163.236402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.145 3.855 3 H 0.112 0.888 4 O -0.575 6.575 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.105 4.105 8 C -0.104 4.104 9 C 0.149 3.851 10 N -1.111 6.111 11 S 2.624 3.376 12 O -0.996 6.996 13 O -0.993 6.993 14 C -0.551 4.551 15 C 0.010 3.990 16 C -0.534 4.534 17 H 0.047 0.953 18 C 0.043 3.957 19 N -0.890 5.890 20 Si 0.935 3.065 21 H -0.275 1.275 22 H -0.275 1.275 23 H -0.272 1.272 24 C -0.198 4.198 25 C -0.138 4.138 26 C -0.113 4.113 27 C -0.120 4.120 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.386 0.614 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.421 0.579 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.266 0.734 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.123 0.877 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 13.313 16.251 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.086 3.914 3 H 0.130 0.870 4 O -0.383 6.383 5 C -0.118 4.118 6 C -0.135 4.135 7 C -0.123 4.123 8 C -0.106 4.106 9 C 0.023 3.977 10 N -0.871 5.871 11 S 2.721 3.279 12 O -0.986 6.986 13 O -0.982 6.982 14 C -0.683 4.683 15 C 0.008 3.992 16 C -0.572 4.572 17 H 0.065 0.935 18 C -0.160 4.160 19 N -0.526 5.526 20 Si 0.761 3.239 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.198 1.198 24 C -0.235 4.235 25 C -0.177 4.177 26 C -0.132 4.132 27 C -0.137 4.137 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.236 0.764 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.256 0.744 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.141 0.859 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.701 12.997 16.337 22.251 hybrid contribution -0.575 -1.100 -0.909 1.539 sum -8.277 11.897 15.428 21.168 Atomic orbital electron populations 1.22447 0.94239 1.03276 1.03383 1.20876 0.93842 0.95896 0.80773 0.87043 1.86596 1.77771 1.30374 1.43534 1.20836 0.99370 0.94389 0.97179 1.21259 0.98576 1.01029 0.92586 1.21324 0.98518 0.93236 0.99243 1.19826 1.01001 0.94441 0.95320 1.20341 0.79319 1.00875 0.97121 1.55539 1.16245 1.63910 1.51424 1.04358 0.72674 0.74196 0.76656 1.93467 1.36063 1.87166 1.81947 1.93476 1.72377 1.46045 1.86340 1.29858 1.10315 1.09930 1.18247 1.18418 0.90130 0.94107 0.96530 1.20729 1.20397 0.91337 1.24688 0.93458 1.25501 0.95602 1.00211 0.94666 1.70019 1.18999 1.31802 1.31810 0.85853 0.78413 0.81482 0.78185 1.19919 1.20065 1.19753 1.23249 0.93639 1.03119 1.03506 1.22516 1.03513 0.98492 0.93148 1.21269 0.98240 1.00444 0.93271 1.21070 1.00180 0.94179 0.98305 0.91852 0.90922 0.90895 0.76384 0.83539 0.84019 0.89154 0.90700 0.74380 0.85584 0.84611 0.92518 0.88280 0.90047 0.91589 0.89248 0.85867 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.51 71.98 0.68 -1.00 16 2 C 0.14 1.81 3.83 29.85 0.11 1.92 16 3 H 0.11 1.26 8.00 -2.39 -0.02 1.24 16 4 O -0.57 -8.51 13.19 -148.98 -1.96 -10.48 16 5 C -0.12 -1.82 4.97 -19.87 -0.10 -1.92 16 6 C -0.12 -1.79 9.67 22.27 0.22 -1.58 16 7 C -0.10 -1.87 9.70 22.27 0.22 -1.65 16 8 C -0.10 -2.26 5.28 -19.87 -0.10 -2.36 16 9 C 0.15 3.78 6.25 85.63 0.54 4.32 16 10 N -1.11 -31.62 5.88 -190.80 -1.12 -32.74 16 11 S 2.62 103.46 5.19 -56.49 -0.29 103.17 16 12 O -1.00 -43.03 18.08 -127.65 -2.31 -45.34 16 13 O -0.99 -47.45 17.18 -127.65 -2.19 -49.65 16 14 C -0.55 -21.93 5.92 71.98 0.43 -21.51 16 15 C 0.01 0.49 1.32 -52.93 -0.07 0.42 16 16 C -0.53 -29.43 8.18 25.60 0.21 -29.22 16 17 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 18 C 0.04 2.35 5.38 84.65 0.46 2.81 16 19 N -0.89 -48.24 12.98 21.45 0.28 -47.96 16 20 Si 0.94 43.82 29.55 68.60 2.03 45.84 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 24 C -0.20 -8.43 9.96 30.62 0.30 -8.13 16 25 C -0.14 -6.07 9.49 30.62 0.29 -5.78 16 26 C -0.11 -2.38 9.70 22.27 0.22 -2.17 16 27 C -0.12 -2.01 9.32 22.27 0.21 -1.80 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.39 3.34 7.51 -74.06 -0.56 2.79 16 32 H 0.15 1.52 8.04 -2.91 -0.02 1.49 16 33 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.09 1.97 8.09 -2.38 -0.02 1.96 16 35 H 0.07 2.13 7.65 -2.39 -0.02 2.11 16 36 H 0.42 10.30 8.61 -96.74 -0.83 9.47 16 37 H 0.13 5.22 8.14 -2.39 -0.02 5.20 16 38 H 0.14 4.30 8.09 -2.39 -0.02 4.28 16 39 H 0.27 13.64 8.32 -92.71 -0.77 12.87 16 40 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 41 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 44 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.14 1.63 6.79 -2.91 -0.02 1.61 16 Total: -1.00 -72.21 392.01 -2.36 -74.56 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.38 Total: 30.22 kcal Atomic # 6 Polarization: -71.24 SS G_CDS: 3.60 Total: -67.63 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -0.84 Total: -80.70 kcal Atomic # 8 Polarization: -99.00 SS G_CDS: -6.47 Total: -105.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 103.46 SS G_CDS: -0.29 Total: 103.17 kcal Total: -72.21 -2.36 -74.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830609371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.255 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds