Wall clock time and date at job start Tue Mar 31 2020 23:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47488 * 2 1 4 4 O 1.42899 * 109.47183 * 239.99665 * 2 1 3 5 5 C 1.50700 * 109.47076 * 119.99885 * 2 1 3 6 6 C 1.38241 * 119.99844 * 264.99845 * 5 2 1 7 7 C 1.38229 * 120.00111 * 179.97438 * 6 5 2 8 8 C 1.38238 * 119.99884 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99921 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47383 * 89.99683 * 9 8 7 11 11 S 1.65598 * 120.00131 * 164.99940 * 10 9 8 12 12 O 1.42100 * 104.27506 * 308.93096 * 11 10 9 13 13 O 1.42100 * 104.27809 * 181.07098 * 11 10 9 14 14 C 1.81403 * 104.44862 * 64.99974 * 11 10 9 15 15 C 1.53002 * 109.46891 * 181.99457 * 14 11 10 16 16 C 1.50698 * 115.55492 * 294.71903 * 15 14 11 17 17 H 1.07999 * 119.99841 * 95.18621 * 16 15 14 18 18 C 1.37877 * 119.99491 * 274.91366 * 16 15 14 19 19 N 1.31511 * 120.00240 * 6.47682 * 18 16 15 20 20 Si 1.86803 * 119.99653 * 186.47170 * 18 16 15 21 21 H 1.48500 * 109.46975 * 90.00093 * 20 18 16 22 22 H 1.48496 * 109.47095 * 210.00185 * 20 18 16 23 23 H 1.48505 * 109.47192 * 330.00237 * 20 18 16 24 24 C 1.53004 * 117.49346 * 80.38919 * 15 14 11 25 25 C 1.53005 * 117.49404 * 149.04497 * 15 14 11 26 26 C 1.38237 * 119.99982 * 0.26968 * 8 7 6 27 27 C 1.38230 * 119.99843 * 359.52187 * 26 8 7 28 28 H 1.09000 * 109.47120 * 300.00121 * 1 2 3 29 29 H 1.09000 * 109.47156 * 60.00491 * 1 2 3 30 30 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 31 31 H 0.96696 * 113.99922 * 299.99932 * 4 2 1 32 32 H 1.08001 * 119.99643 * 359.97438 * 6 5 2 33 33 H 1.07998 * 119.99981 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46860 * 329.99688 * 9 8 7 35 35 H 1.09000 * 109.46467 * 209.99761 * 9 8 7 36 36 H 0.97003 * 120.00348 * 345.00359 * 10 9 8 37 37 H 1.08998 * 109.47076 * 61.99764 * 14 11 10 38 38 H 1.08999 * 109.47201 * 301.99827 * 14 11 10 39 39 H 0.97003 * 119.99981 * 185.08493 * 19 18 16 40 40 H 1.09003 * 117.49911 * 214.99518 * 24 15 14 41 41 H 1.08994 * 117.50007 * 0.02562 * 24 15 14 42 42 H 1.09002 * 117.49894 * 359.97438 * 25 15 14 43 43 H 1.08995 * 117.49405 * 144.97694 * 25 15 14 44 44 H 1.08000 * 119.99514 * 179.72524 * 26 8 7 45 45 H 1.07998 * 120.00059 * 180.27317 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 2.3611 0.0141 2.3610 7 6 2.8214 -0.6375 3.4899 8 6 2.9523 -2.0137 3.4885 9 6 3.4536 -2.7241 4.7194 10 7 2.3185 -3.0783 5.5751 11 16 2.5145 -4.1783 6.7973 12 8 3.1300 -5.2943 6.1689 13 8 1.2238 -4.2864 7.3818 14 6 3.6684 -3.3782 7.9458 15 6 3.9713 -4.3265 9.1076 16 6 2.8035 -4.6515 10.0029 17 1 2.2239 -5.5464 9.8309 18 6 2.4787 -3.8093 11.0451 19 7 3.1044 -2.6607 11.1819 20 14 1.1497 -4.2998 12.2628 21 1 1.7621 -5.0509 13.3880 22 1 0.4834 -3.0803 12.7861 23 1 0.1471 -5.1582 11.5821 24 6 5.0066 -5.4276 8.8691 25 6 5.3536 -4.2296 9.7565 26 6 2.6284 -2.7376 2.3563 27 6 2.1640 -2.0864 1.2289 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7210 -1.5952 -1.2328 32 1 2.2583 1.0892 2.3622 33 1 3.0778 -0.0715 4.3732 34 1 4.1307 -2.0685 5.2669 35 1 3.9836 -3.6301 4.4254 36 1 1.4521 -2.6684 5.4259 37 1 3.2205 -2.4624 8.3316 38 1 4.5937 -3.1375 7.4224 39 1 2.9290 -2.1019 11.9552 40 1 4.8430 -6.3871 9.3598 41 1 5.4720 -5.4761 7.8847 42 1 6.0472 -3.4905 9.3554 43 1 5.4181 -4.4005 10.8311 44 1 2.7349 -3.8124 2.3538 45 1 1.9067 -2.6524 0.3458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830609372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:54 Heat of formation + Delta-G solvation = -82.600472 kcal Electronic energy + Delta-G solvation = -26996.907709 eV Core-core repulsion = 23106.876218 eV Total energy + Delta-G solvation = -3890.031491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.08598 -37.65352 -36.77335 -36.27171 -35.20511 -34.99450 -32.15826 -32.04562 -31.13579 -29.75685 -28.19118 -25.92286 -25.46199 -23.34922 -22.81968 -21.23411 -20.93123 -19.76407 -18.68264 -17.91732 -17.06533 -16.53036 -16.27318 -16.25128 -15.38840 -15.17371 -15.02071 -14.71703 -14.63330 -14.26787 -13.99315 -13.79874 -13.74345 -13.52586 -13.25762 -12.92758 -12.51555 -12.35465 -12.14804 -11.93209 -11.83570 -11.43500 -11.32022 -11.24931 -11.20039 -11.12969 -11.05306 -10.90844 -10.60541 -10.49453 -10.47515 -10.13325 -9.74841 -9.28979 -9.15080 -8.96000 -8.88963 -8.56232 -8.11686 -6.15446 -4.25480 0.85328 1.17015 1.18961 3.28801 3.29342 3.35753 3.43897 3.64724 4.03132 4.23334 4.37647 4.48530 4.50919 4.61867 4.68824 4.78161 4.82103 4.97543 5.12690 5.14354 5.19067 5.20312 5.29735 5.35517 5.43568 5.56814 5.65970 5.68323 5.75159 5.83001 5.85265 6.03324 6.16430 6.23723 6.26808 6.36055 6.40773 6.59182 6.69769 6.72731 6.96897 7.18213 7.20794 7.24871 7.37651 7.79807 8.18679 8.80927 9.46184 10.92916 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.002520 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.177887 B =11109.553823 C =11491.707039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.143 3.857 3 H 0.107 0.893 4 O -0.558 6.558 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.100 4.100 8 C -0.091 4.091 9 C 0.155 3.845 10 N -1.128 6.128 11 S 2.606 3.394 12 O -0.975 6.975 13 O -0.947 6.947 14 C -0.553 4.553 15 C 0.042 3.958 16 C -0.511 4.511 17 H 0.069 0.931 18 C 0.080 3.920 19 N -0.875 5.875 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.210 4.210 25 C -0.140 4.140 26 C -0.096 4.096 27 C -0.116 4.116 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.374 0.626 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.412 0.588 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.262 0.738 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 6.869 -19.657 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 H 0.125 0.875 4 O -0.365 6.365 5 C -0.117 4.117 6 C -0.132 4.132 7 C -0.118 4.118 8 C -0.093 4.093 9 C 0.029 3.971 10 N -0.885 5.885 11 S 2.703 3.297 12 O -0.965 6.965 13 O -0.937 6.937 14 C -0.686 4.686 15 C 0.039 3.961 16 C -0.549 4.549 17 H 0.087 0.913 18 C -0.125 4.125 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.247 4.247 25 C -0.179 4.179 26 C -0.115 4.115 27 C -0.134 4.134 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.223 0.777 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.153 0.847 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.146 0.854 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.634 6.704 -19.642 20.765 hybrid contribution -0.831 0.208 1.074 1.374 sum -1.465 6.912 -18.568 19.867 Atomic orbital electron populations 1.22491 0.95316 1.03023 1.03009 1.20811 0.93066 0.95950 0.81725 0.87543 1.86618 1.77308 1.29261 1.43270 1.20575 1.00215 0.94483 0.96437 1.20938 0.99663 0.99802 0.92775 1.21148 0.98469 0.93882 0.98334 1.19915 1.00388 0.93798 0.95182 1.20158 0.88328 0.99724 0.88891 1.56064 1.18215 1.65183 1.49052 1.05188 0.76363 0.74290 0.73865 1.93491 1.79459 1.48944 1.74603 1.93562 1.37814 1.85135 1.77238 1.29982 1.13602 1.12952 1.12097 1.18297 0.91121 0.93254 0.93387 1.20556 1.12281 1.08514 1.13500 0.91295 1.24941 0.95943 0.93913 0.97666 1.70008 1.42606 1.10055 1.28397 0.86595 0.82236 0.78375 0.81105 1.20472 1.21036 1.19107 1.23221 1.06652 0.94745 1.00095 1.22541 0.99001 0.98151 0.98201 1.21133 0.97686 1.00293 0.92378 1.20808 1.00574 0.93665 0.98345 0.91183 0.91448 0.92033 0.77736 0.85815 0.85336 0.91020 0.89502 0.75487 0.84697 0.88413 0.92801 0.89501 0.90633 0.91535 0.89550 0.85366 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.52 37.16 0.35 -0.76 16 2 C 0.14 1.05 3.83 -27.88 -0.11 0.94 16 3 H 0.11 0.73 8.05 -51.93 -0.42 0.31 16 4 O -0.56 -4.52 13.14 -35.23 -0.46 -4.98 16 5 C -0.12 -1.01 5.00 -104.62 -0.52 -1.54 16 6 C -0.11 -1.01 9.68 -39.58 -0.38 -1.39 16 7 C -0.10 -0.98 9.70 -39.58 -0.38 -1.37 16 8 C -0.09 -1.00 5.28 -104.62 -0.55 -1.55 16 9 C 0.16 1.88 6.26 -5.19 -0.03 1.85 16 10 N -1.13 -16.43 5.88 -11.66 -0.07 -16.50 16 11 S 2.61 51.30 5.25 -107.50 -0.56 50.74 16 12 O -0.97 -20.76 17.50 -57.54 -1.01 -21.77 16 13 O -0.95 -22.39 17.52 -57.54 -1.01 -23.40 16 14 C -0.55 -11.28 5.93 37.16 0.22 -11.06 16 15 C 0.04 1.00 1.33 -155.66 -0.21 0.79 16 16 C -0.51 -13.91 8.01 -34.44 -0.28 -14.18 16 17 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 18 C 0.08 2.18 5.39 -17.82 -0.10 2.08 16 19 N -0.88 -23.92 12.93 55.43 0.72 -23.21 16 20 Si 0.89 21.33 29.55 -169.99 -5.02 16.31 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.21 -4.53 9.96 -26.69 -0.27 -4.79 16 25 C -0.14 -3.13 9.44 -26.69 -0.25 -3.39 16 26 C -0.10 -0.99 9.70 -39.58 -0.38 -1.38 16 27 C -0.12 -1.03 9.33 -39.59 -0.37 -1.40 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.37 1.85 7.39 45.56 0.34 2.19 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.09 1.05 7.64 -51.93 -0.40 0.66 16 36 H 0.41 5.47 8.61 -34.47 -0.30 5.17 16 37 H 0.13 2.87 8.14 -51.93 -0.42 2.45 16 38 H 0.10 1.65 8.09 -51.92 -0.42 1.23 16 39 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 44 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.12 0.77 6.61 -52.49 -0.35 0.42 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -33.98 391.35 -10.93 -44.91 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.16 Total: 9.13 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: -3.26 Total: -37.13 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.65 Total: -39.71 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -2.48 Total: -50.15 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 51.30 SS G_CDS: -0.56 Total: 50.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.98 -10.93 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830609372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.691 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds