Wall clock time and date at job start Tue Mar 31 2020 23:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47488 * 2 1 4 4 O 1.42899 * 109.47183 * 239.99665 * 2 1 3 5 5 C 1.50700 * 109.47076 * 119.99885 * 2 1 3 6 6 C 1.38241 * 119.99844 * 264.99845 * 5 2 1 7 7 C 1.38229 * 120.00111 * 179.97438 * 6 5 2 8 8 C 1.38238 * 119.99884 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99921 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47383 * 89.99683 * 9 8 7 11 11 S 1.65598 * 120.00131 * 164.99940 * 10 9 8 12 12 O 1.42100 * 104.27506 * 308.93096 * 11 10 9 13 13 O 1.42100 * 104.27809 * 181.07098 * 11 10 9 14 14 C 1.81403 * 104.44862 * 64.99974 * 11 10 9 15 15 C 1.53002 * 109.46891 * 181.99457 * 14 11 10 16 16 C 1.50698 * 115.55492 * 294.71903 * 15 14 11 17 17 H 1.07999 * 119.99841 * 95.18621 * 16 15 14 18 18 C 1.37877 * 119.99491 * 274.91366 * 16 15 14 19 19 N 1.31511 * 120.00240 * 6.47682 * 18 16 15 20 20 Si 1.86803 * 119.99653 * 186.47170 * 18 16 15 21 21 H 1.48500 * 109.46975 * 90.00093 * 20 18 16 22 22 H 1.48496 * 109.47095 * 210.00185 * 20 18 16 23 23 H 1.48505 * 109.47192 * 330.00237 * 20 18 16 24 24 C 1.53004 * 117.49346 * 80.38919 * 15 14 11 25 25 C 1.53005 * 117.49404 * 149.04497 * 15 14 11 26 26 C 1.38237 * 119.99982 * 0.26968 * 8 7 6 27 27 C 1.38230 * 119.99843 * 359.52187 * 26 8 7 28 28 H 1.09000 * 109.47120 * 300.00121 * 1 2 3 29 29 H 1.09000 * 109.47156 * 60.00491 * 1 2 3 30 30 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 31 31 H 0.96696 * 113.99922 * 299.99932 * 4 2 1 32 32 H 1.08001 * 119.99643 * 359.97438 * 6 5 2 33 33 H 1.07998 * 119.99981 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46860 * 329.99688 * 9 8 7 35 35 H 1.09000 * 109.46467 * 209.99761 * 9 8 7 36 36 H 0.97003 * 120.00348 * 345.00359 * 10 9 8 37 37 H 1.08998 * 109.47076 * 61.99764 * 14 11 10 38 38 H 1.08999 * 109.47201 * 301.99827 * 14 11 10 39 39 H 0.97003 * 119.99981 * 185.08493 * 19 18 16 40 40 H 1.09003 * 117.49911 * 214.99518 * 24 15 14 41 41 H 1.08994 * 117.50007 * 0.02562 * 24 15 14 42 42 H 1.09002 * 117.49894 * 359.97438 * 25 15 14 43 43 H 1.08995 * 117.49405 * 144.97694 * 25 15 14 44 44 H 1.08000 * 119.99514 * 179.72524 * 26 8 7 45 45 H 1.07998 * 120.00059 * 180.27317 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 2.3611 0.0141 2.3610 7 6 2.8214 -0.6375 3.4899 8 6 2.9523 -2.0137 3.4885 9 6 3.4536 -2.7241 4.7194 10 7 2.3185 -3.0783 5.5751 11 16 2.5145 -4.1783 6.7973 12 8 3.1300 -5.2943 6.1689 13 8 1.2238 -4.2864 7.3818 14 6 3.6684 -3.3782 7.9458 15 6 3.9713 -4.3265 9.1076 16 6 2.8035 -4.6515 10.0029 17 1 2.2239 -5.5464 9.8309 18 6 2.4787 -3.8093 11.0451 19 7 3.1044 -2.6607 11.1819 20 14 1.1497 -4.2998 12.2628 21 1 1.7621 -5.0509 13.3880 22 1 0.4834 -3.0803 12.7861 23 1 0.1471 -5.1582 11.5821 24 6 5.0066 -5.4276 8.8691 25 6 5.3536 -4.2296 9.7565 26 6 2.6284 -2.7376 2.3563 27 6 2.1640 -2.0864 1.2289 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7210 -1.5952 -1.2328 32 1 2.2583 1.0892 2.3622 33 1 3.0778 -0.0715 4.3732 34 1 4.1307 -2.0685 5.2669 35 1 3.9836 -3.6301 4.4254 36 1 1.4521 -2.6684 5.4259 37 1 3.2205 -2.4624 8.3316 38 1 4.5937 -3.1375 7.4224 39 1 2.9290 -2.1019 11.9552 40 1 4.8430 -6.3871 9.3598 41 1 5.4720 -5.4761 7.8847 42 1 6.0472 -3.4905 9.3554 43 1 5.4181 -4.4005 10.8311 44 1 2.7349 -3.8124 2.3538 45 1 1.9067 -2.6524 0.3458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830609372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:53 Heat of formation + Delta-G solvation = -106.792632 kcal Electronic energy + Delta-G solvation = -26997.956760 eV Core-core repulsion = 23106.876218 eV Total energy + Delta-G solvation = -3891.080542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.76402 -38.55784 -38.33733 -37.91318 -36.80360 -36.06993 -34.07662 -32.87471 -31.82723 -30.44873 -29.84476 -27.48501 -26.75225 -24.02283 -23.51361 -22.97895 -21.67837 -21.47383 -20.23604 -18.68716 -18.40794 -18.29284 -17.49118 -17.00016 -16.78563 -16.55396 -16.17211 -15.97156 -15.65760 -15.50449 -15.35659 -14.91540 -14.69165 -14.40717 -14.12935 -13.94756 -13.70224 -13.64452 -13.41987 -13.16334 -12.98045 -12.91582 -12.88851 -12.86967 -12.82860 -12.45651 -12.33336 -12.19962 -12.03641 -11.90471 -11.77917 -11.55014 -11.09926 -10.86609 -10.56579 -10.47697 -9.87798 -9.85038 -9.60934 -8.20058 -6.33681 -0.53679 0.28986 0.47306 1.37384 1.40304 1.50762 2.05326 2.40317 2.79235 2.96753 3.08110 3.36837 3.46487 3.52443 3.60195 3.79066 3.86839 4.02823 4.08541 4.19416 4.24853 4.29645 4.43281 4.45717 4.51885 4.54010 4.60980 4.71717 4.83550 4.84157 4.90358 4.99047 4.99849 5.02323 5.15252 5.23066 5.24163 5.43647 5.47906 5.60516 5.60908 5.66102 5.72381 6.03326 6.10078 6.22889 6.73074 6.75790 7.38836 8.87625 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.002520 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.177887 B =11109.553823 C =11491.707039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.146 3.854 3 H 0.112 0.888 4 O -0.573 6.573 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.107 4.107 8 C -0.105 4.105 9 C 0.147 3.853 10 N -1.114 6.114 11 S 2.624 3.376 12 O -0.993 6.993 13 O -0.995 6.995 14 C -0.551 4.551 15 C 0.008 3.992 16 C -0.530 4.530 17 H 0.048 0.952 18 C 0.041 3.959 19 N -0.892 5.892 20 Si 0.933 3.067 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.277 1.277 24 C -0.198 4.198 25 C -0.137 4.137 26 C -0.111 4.111 27 C -0.121 4.121 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.386 0.614 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.419 0.581 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.265 0.735 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.128 0.872 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 7.993 -21.192 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.087 3.913 3 H 0.129 0.871 4 O -0.381 6.381 5 C -0.118 4.118 6 C -0.137 4.137 7 C -0.125 4.125 8 C -0.107 4.107 9 C 0.022 3.978 10 N -0.874 5.874 11 S 2.722 3.278 12 O -0.983 6.983 13 O -0.985 6.985 14 C -0.684 4.684 15 C 0.006 3.994 16 C -0.567 4.567 17 H 0.066 0.934 18 C -0.162 4.162 19 N -0.528 5.528 20 Si 0.759 3.241 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.235 4.235 25 C -0.176 4.176 26 C -0.130 4.130 27 C -0.139 4.139 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.237 0.763 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.254 0.746 37 H 0.142 0.858 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.146 0.854 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.216 7.815 -21.168 22.566 hybrid contribution -0.946 -0.127 1.429 1.719 sum -1.162 7.688 -19.739 21.215 Atomic orbital electron populations 1.22450 0.94425 1.03216 1.03345 1.20849 0.93664 0.95929 0.80879 0.87056 1.86593 1.77669 1.30402 1.43480 1.20833 0.99454 0.94560 0.96938 1.21228 0.99048 1.00966 0.92458 1.21327 0.98464 0.93589 0.99156 1.19846 1.01774 0.94287 0.94794 1.20425 0.87613 1.00393 0.89392 1.55589 1.19517 1.64402 1.47865 1.04328 0.75091 0.74466 0.73923 1.93459 1.79544 1.50437 1.74871 1.93494 1.40140 1.86174 1.78672 1.29861 1.15625 1.11484 1.11404 1.18426 0.90716 0.95533 0.94716 1.20736 1.13384 1.07900 1.14695 0.93411 1.25497 0.97576 0.94135 0.98984 1.70046 1.43550 1.10383 1.28834 0.85924 0.80216 0.78260 0.79713 1.19393 1.20164 1.20155 1.23272 1.05129 0.94028 1.01051 1.22503 0.98606 0.99190 0.97287 1.21282 0.98238 1.00518 0.92914 1.21083 0.99978 0.94100 0.98699 0.91075 0.90876 0.91934 0.76342 0.83835 0.84350 0.88988 0.89579 0.74568 0.85766 0.84643 0.92618 0.89986 0.88086 0.89231 0.91615 0.85383 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.52 71.98 0.68 -1.11 16 2 C 0.15 1.81 3.83 29.85 0.11 1.92 16 3 H 0.11 1.27 8.05 -2.39 -0.02 1.25 16 4 O -0.57 -8.07 13.14 -148.98 -1.96 -10.03 16 5 C -0.12 -1.79 5.00 -19.87 -0.10 -1.89 16 6 C -0.12 -1.85 9.68 22.27 0.22 -1.64 16 7 C -0.11 -1.90 9.70 22.27 0.22 -1.68 16 8 C -0.11 -2.13 5.28 -19.86 -0.10 -2.24 16 9 C 0.15 3.31 6.26 85.64 0.54 3.84 16 10 N -1.11 -31.26 5.88 -190.79 -1.12 -32.38 16 11 S 2.62 102.35 5.25 -56.49 -0.30 102.06 16 12 O -0.99 -41.63 17.50 -127.65 -2.23 -43.86 16 13 O -0.99 -47.88 17.52 -127.65 -2.24 -50.12 16 14 C -0.55 -21.86 5.93 71.98 0.43 -21.43 16 15 C 0.01 0.39 1.33 -52.92 -0.07 0.32 16 16 C -0.53 -29.25 8.01 25.60 0.20 -29.04 16 17 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 18 C 0.04 2.23 5.39 84.66 0.46 2.68 16 19 N -0.89 -48.80 12.93 21.45 0.28 -48.52 16 20 Si 0.93 44.03 29.55 68.60 2.03 46.06 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 24 C -0.20 -8.29 9.96 30.62 0.30 -7.99 16 25 C -0.14 -5.99 9.44 30.62 0.29 -5.70 16 26 C -0.11 -2.14 9.70 22.27 0.22 -1.92 16 27 C -0.12 -1.92 9.33 22.27 0.21 -1.71 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.39 3.01 7.39 -74.06 -0.55 2.46 16 32 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 35 H 0.09 1.96 7.64 -2.39 -0.02 1.94 16 36 H 0.42 10.80 8.61 -96.75 -0.83 9.97 16 37 H 0.12 5.22 8.14 -2.39 -0.02 5.20 16 38 H 0.14 4.20 8.09 -2.39 -0.02 4.18 16 39 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 40 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 45 H 0.14 1.50 6.61 -2.91 -0.02 1.48 16 Total: -1.00 -72.55 391.35 -2.32 -74.87 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.37 Total: 29.52 kcal Atomic # 6 Polarization: -71.18 SS G_CDS: 3.60 Total: -67.59 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -0.84 Total: -80.90 kcal Atomic # 8 Polarization: -97.59 SS G_CDS: -6.43 Total: -104.01 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 102.35 SS G_CDS: -0.30 Total: 102.06 kcal Total: -72.55 -2.32 -74.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830609372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.921 kcal (2) G-P(sol) polarization free energy of solvation -72.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds