Wall clock time and date at job start Tue Mar 31 2020 23:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46937 * 2 1 4 4 C 1.52998 * 109.47258 * 119.99986 * 2 1 3 5 5 N 1.46508 * 109.47135 * 305.00092 * 4 2 1 6 6 S 1.65600 * 119.99972 * 164.99935 * 5 4 2 7 7 O 1.42101 * 104.27668 * 181.07119 * 6 5 4 8 8 O 1.42096 * 104.27505 * 308.92593 * 6 5 4 9 9 C 1.81398 * 104.44942 * 65.00026 * 6 5 4 10 10 C 1.53001 * 109.47164 * 173.81233 * 9 6 5 11 11 C 1.50701 * 115.55140 * 65.19097 * 10 9 6 12 12 H 1.08001 * 120.00084 * 264.78682 * 11 10 9 13 13 C 1.37879 * 120.00004 * 84.78209 * 11 10 9 14 14 N 1.31509 * 119.99991 * 352.23937 * 13 11 10 15 15 Si 1.86797 * 119.99968 * 172.23259 * 13 11 10 16 16 H 1.48505 * 109.47135 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47273 * 120.00339 * 15 13 11 18 18 H 1.48505 * 109.47427 * 240.00595 * 15 13 11 19 19 C 1.52995 * 117.49853 * 279.52596 * 10 9 6 20 20 C 1.52994 * 117.49830 * 210.86327 * 10 9 6 21 21 C 1.50703 * 109.46789 * 239.99800 * 2 1 3 22 22 C 1.38232 * 119.99694 * 90.00412 * 21 2 1 23 23 C 1.38239 * 120.00036 * 180.02562 * 22 21 2 24 24 C 1.38238 * 119.99513 * 359.94915 * 23 22 21 25 25 C 1.38229 * 120.00261 * 0.28483 * 24 23 22 26 26 C 1.38229 * 120.00163 * 270.02227 * 21 2 1 27 27 H 1.08997 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46898 * 300.00219 * 1 2 3 29 29 H 1.09000 * 109.47155 * 60.00051 * 1 2 3 30 30 H 0.96707 * 113.99707 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47400 * 64.99591 * 4 2 1 32 32 H 1.08998 * 109.47231 * 184.99871 * 4 2 1 33 33 H 0.96999 * 119.99678 * 344.99917 * 5 4 2 34 34 H 1.09010 * 109.46745 * 293.80775 * 9 6 5 35 35 H 1.08992 * 109.47486 * 53.81031 * 9 6 5 36 36 H 0.97003 * 120.00005 * 185.01847 * 14 13 11 37 37 H 1.09003 * 117.49587 * 359.97438 * 19 10 9 38 38 H 1.08998 * 117.50427 * 145.02228 * 19 10 9 39 39 H 1.09006 * 117.49594 * 214.97380 * 20 10 9 40 40 H 1.09001 * 117.49742 * 359.97438 * 20 10 9 41 41 H 1.08000 * 120.00460 * 359.97438 * 22 21 2 42 42 H 1.07995 * 120.00218 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99485 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00431 * 179.72793 * 25 24 23 45 45 H 1.08002 * 120.00212 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.4559 -0.1036 2.4424 6 16 1.5241 -0.8887 3.8989 7 8 0.8494 -0.0192 4.7977 8 8 1.0213 -2.1882 3.6203 9 6 3.2937 -0.9615 4.2914 10 6 3.4809 -1.5329 5.6982 11 6 3.0524 -2.9663 5.8800 12 1 2.0656 -3.1912 6.2567 13 6 3.9202 -3.9905 5.5653 14 7 5.0602 -3.7255 4.9655 15 14 3.4767 -5.7544 5.9910 16 1 2.1495 -5.7843 6.6565 17 1 3.4252 -6.5656 4.7483 18 1 4.5026 -6.3157 6.9064 19 6 3.2824 -0.5811 6.8795 20 6 4.6899 -1.0497 6.5018 21 6 2.0323 -0.7105 -1.2305 22 6 2.2627 0.0005 -2.3934 23 6 2.7229 -0.6513 -3.5223 24 6 2.9537 -2.0138 -3.4878 25 6 2.7187 -2.7255 -2.3264 26 6 2.2622 -2.0731 -1.1964 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9704 1.4236 -0.0004 31 1 1.7517 -1.7715 1.2056 32 1 3.1264 -0.6443 1.2951 33 1 1.0291 0.7652 2.3792 34 1 3.8000 -1.6017 3.5688 35 1 3.7172 0.0418 4.2474 36 1 5.6374 -4.4505 4.6788 37 1 3.0188 0.4523 6.6543 38 1 2.8423 -0.9917 7.7883 39 1 5.1750 -1.7685 7.1623 40 1 5.3520 -0.3250 6.0280 41 1 2.0824 1.0650 -2.4203 42 1 2.9025 -0.0959 -4.4309 43 1 3.3136 -2.5229 -4.3697 44 1 2.8948 -3.7908 -2.3008 45 1 2.0823 -2.6286 -0.2878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830633713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:08 Heat of formation + Delta-G solvation = -74.359476 kcal Electronic energy + Delta-G solvation = -28099.950535 eV Core-core repulsion = 24210.276400 eV Total energy + Delta-G solvation = -3889.674135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.15082 -37.67389 -36.76590 -36.24372 -35.10698 -34.42159 -32.19575 -32.06131 -31.02144 -29.32030 -28.17012 -26.31414 -25.47126 -23.24448 -22.44765 -21.22302 -20.45118 -19.73939 -18.75460 -17.80991 -17.27177 -16.49243 -16.33505 -15.74192 -15.54981 -15.04782 -14.82819 -14.71369 -14.56920 -14.17724 -14.10269 -13.78894 -13.43871 -13.22321 -13.10596 -12.58660 -12.46653 -12.11481 -11.97100 -11.84820 -11.80364 -11.49629 -11.35764 -11.27728 -11.15519 -11.02876 -10.96611 -10.89178 -10.58539 -10.46810 -10.17120 -10.10955 -9.73724 -9.23791 -9.07574 -8.96694 -8.93762 -8.59064 -8.10444 -6.16173 -4.26398 1.05439 1.14638 1.24545 3.26682 3.34650 3.41889 3.42272 3.59434 4.02906 4.35495 4.37128 4.49771 4.58963 4.81923 4.86405 4.88027 4.99681 5.04542 5.13537 5.20396 5.28821 5.37238 5.48394 5.57092 5.64791 5.68593 5.74855 5.84945 5.88988 5.95425 6.07554 6.08967 6.24915 6.30699 6.35903 6.36635 6.39825 6.59705 6.71444 6.82183 6.97132 7.21120 7.28840 7.37967 7.45438 7.78729 8.18930 8.79606 9.44806 10.91560 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003801 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.390025 B = 7365.220029 C = 8555.063127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 O -0.550 6.550 4 C 0.092 3.908 5 N -1.127 6.127 6 S 2.607 3.393 7 O -0.973 6.973 8 O -0.951 6.951 9 C -0.554 4.554 10 C 0.043 3.957 11 C -0.515 4.515 12 H 0.069 0.931 13 C 0.082 3.918 14 N -0.875 5.875 15 Si 0.892 3.108 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.208 4.208 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.102 4.102 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.111 4.111 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.379 0.621 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.413 0.587 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 7.358 -15.969 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.129 3.871 3 O -0.356 6.356 4 C -0.035 4.035 5 N -0.885 5.885 6 S 2.704 3.296 7 O -0.964 6.964 8 O -0.941 6.941 9 C -0.688 4.688 10 C 0.040 3.960 11 C -0.552 4.552 12 H 0.087 0.913 13 C -0.123 4.123 14 N -0.511 5.511 15 Si 0.719 3.281 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.208 1.208 19 C -0.245 4.245 20 C -0.181 4.181 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.129 4.129 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.247 0.753 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.561 6.894 -15.518 17.350 hybrid contribution 1.217 -0.647 -0.211 1.395 sum -2.344 6.247 -15.729 17.086 Atomic orbital electron populations 1.21743 0.91160 1.03203 1.03075 1.20114 0.95458 0.81681 0.89841 1.86538 1.27094 1.25193 1.96728 1.21995 0.97897 0.98492 0.85147 1.55913 1.74071 1.34327 1.24161 1.05129 0.78687 0.73679 0.72065 1.93509 1.72843 1.66974 1.63045 1.93527 1.77883 1.39724 1.82926 1.29981 1.22199 1.07054 1.09519 1.18284 1.00743 0.93389 0.83551 1.20575 1.00748 0.87836 1.46024 0.91287 1.24948 0.94256 0.99259 0.93826 1.69986 1.11054 1.32312 1.37702 0.86525 0.78868 0.84225 0.78523 1.19193 1.20648 1.20833 1.23200 1.01622 0.98341 1.01380 1.22553 0.89837 1.01604 1.04068 1.20419 1.00842 0.94476 0.95945 1.20982 0.98631 1.00323 0.92079 1.21146 1.00049 0.94746 0.98296 1.21206 0.99939 0.94483 0.98135 1.21202 0.99221 1.00192 0.92965 1.21308 0.98460 0.94011 0.99120 0.90566 0.91010 0.91720 0.77308 0.89002 0.91298 0.75298 0.84976 0.88241 0.92797 0.90660 0.89510 0.89592 0.91544 0.85412 0.86136 0.86186 0.85753 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.60 37.16 0.32 -1.17 16 2 C 0.17 1.88 0.89 -91.77 -0.08 1.80 16 3 O -0.55 -5.58 11.77 -35.23 -0.41 -5.99 16 4 C 0.09 1.19 4.75 -4.04 -0.02 1.17 16 5 N -1.13 -16.52 5.29 -10.61 -0.06 -16.58 16 6 S 2.61 51.76 5.19 -107.50 -0.56 51.20 16 7 O -0.97 -21.33 18.08 -57.54 -1.04 -22.37 16 8 O -0.95 -22.09 17.16 -57.54 -0.99 -23.07 16 9 C -0.55 -11.41 5.93 37.16 0.22 -11.19 16 10 C 0.04 1.03 1.32 -155.66 -0.21 0.82 16 11 C -0.51 -13.95 8.18 -34.44 -0.28 -14.23 16 12 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 13 C 0.08 2.21 5.38 -17.82 -0.10 2.11 16 14 N -0.87 -23.70 12.98 55.43 0.72 -22.98 16 15 Si 0.89 21.17 29.55 -169.99 -5.02 16.15 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.21 -4.56 9.96 -26.70 -0.27 -4.83 16 20 C -0.14 -3.20 9.49 -26.70 -0.25 -3.46 16 21 C -0.12 -1.24 4.81 -104.63 -0.50 -1.74 16 22 C -0.10 -0.99 9.35 -39.58 -0.37 -1.36 16 23 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 26 C -0.11 -1.24 9.14 -39.58 -0.36 -1.60 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.81 6.89 -51.93 -0.36 0.45 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.38 2.83 9.04 45.56 0.41 3.24 16 31 H 0.09 1.27 5.77 -51.93 -0.30 0.97 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.41 5.41 7.54 -34.47 -0.26 5.15 16 34 H 0.13 2.79 8.14 -51.92 -0.42 2.37 16 35 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 36 H 0.26 6.75 8.32 -40.82 -0.34 6.42 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 39 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.13 1.11 7.48 -52.49 -0.39 0.72 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.13 1.48 6.05 -52.49 -0.32 1.16 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -33.02 385.60 -10.47 -43.49 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -5.83 Total: 12.58 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: -3.09 Total: -38.23 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.66 Total: -39.56 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -2.44 Total: -51.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 51.76 SS G_CDS: -0.56 Total: 51.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.02 -10.47 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830633713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.871 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds