Wall clock time and date at job start Tue Mar 31 2020 23:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46937 * 2 1 4 4 C 1.52998 * 109.47258 * 119.99986 * 2 1 3 5 5 N 1.46508 * 109.47135 * 305.00092 * 4 2 1 6 6 S 1.65600 * 119.99972 * 164.99935 * 5 4 2 7 7 O 1.42101 * 104.27668 * 181.07119 * 6 5 4 8 8 O 1.42096 * 104.27505 * 308.92593 * 6 5 4 9 9 C 1.81398 * 104.44942 * 65.00026 * 6 5 4 10 10 C 1.53001 * 109.47164 * 173.81233 * 9 6 5 11 11 C 1.50701 * 115.55140 * 65.19097 * 10 9 6 12 12 H 1.08001 * 120.00084 * 264.78682 * 11 10 9 13 13 C 1.37879 * 120.00004 * 84.78209 * 11 10 9 14 14 N 1.31509 * 119.99991 * 352.23937 * 13 11 10 15 15 Si 1.86797 * 119.99968 * 172.23259 * 13 11 10 16 16 H 1.48505 * 109.47135 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47273 * 120.00339 * 15 13 11 18 18 H 1.48505 * 109.47427 * 240.00595 * 15 13 11 19 19 C 1.52995 * 117.49853 * 279.52596 * 10 9 6 20 20 C 1.52994 * 117.49830 * 210.86327 * 10 9 6 21 21 C 1.50703 * 109.46789 * 239.99800 * 2 1 3 22 22 C 1.38232 * 119.99694 * 90.00412 * 21 2 1 23 23 C 1.38239 * 120.00036 * 180.02562 * 22 21 2 24 24 C 1.38238 * 119.99513 * 359.94915 * 23 22 21 25 25 C 1.38229 * 120.00261 * 0.28483 * 24 23 22 26 26 C 1.38229 * 120.00163 * 270.02227 * 21 2 1 27 27 H 1.08997 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46898 * 300.00219 * 1 2 3 29 29 H 1.09000 * 109.47155 * 60.00051 * 1 2 3 30 30 H 0.96707 * 113.99707 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47400 * 64.99591 * 4 2 1 32 32 H 1.08998 * 109.47231 * 184.99871 * 4 2 1 33 33 H 0.96999 * 119.99678 * 344.99917 * 5 4 2 34 34 H 1.09010 * 109.46745 * 293.80775 * 9 6 5 35 35 H 1.08992 * 109.47486 * 53.81031 * 9 6 5 36 36 H 0.97003 * 120.00005 * 185.01847 * 14 13 11 37 37 H 1.09003 * 117.49587 * 359.97438 * 19 10 9 38 38 H 1.08998 * 117.50427 * 145.02228 * 19 10 9 39 39 H 1.09006 * 117.49594 * 214.97380 * 20 10 9 40 40 H 1.09001 * 117.49742 * 359.97438 * 20 10 9 41 41 H 1.08000 * 120.00460 * 359.97438 * 22 21 2 42 42 H 1.07995 * 120.00218 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99485 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00431 * 179.72793 * 25 24 23 45 45 H 1.08002 * 120.00212 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.4559 -0.1036 2.4424 6 16 1.5241 -0.8887 3.8989 7 8 0.8494 -0.0192 4.7977 8 8 1.0213 -2.1882 3.6203 9 6 3.2937 -0.9615 4.2914 10 6 3.4809 -1.5329 5.6982 11 6 3.0524 -2.9663 5.8800 12 1 2.0656 -3.1912 6.2567 13 6 3.9202 -3.9905 5.5653 14 7 5.0602 -3.7255 4.9655 15 14 3.4767 -5.7544 5.9910 16 1 2.1495 -5.7843 6.6565 17 1 3.4252 -6.5656 4.7483 18 1 4.5026 -6.3157 6.9064 19 6 3.2824 -0.5811 6.8795 20 6 4.6899 -1.0497 6.5018 21 6 2.0323 -0.7105 -1.2305 22 6 2.2627 0.0005 -2.3934 23 6 2.7229 -0.6513 -3.5223 24 6 2.9537 -2.0138 -3.4878 25 6 2.7187 -2.7255 -2.3264 26 6 2.2622 -2.0731 -1.1964 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9704 1.4236 -0.0004 31 1 1.7517 -1.7715 1.2056 32 1 3.1264 -0.6443 1.2951 33 1 1.0291 0.7652 2.3792 34 1 3.8000 -1.6017 3.5688 35 1 3.7172 0.0418 4.2474 36 1 5.6374 -4.4505 4.6788 37 1 3.0188 0.4523 6.6543 38 1 2.8423 -0.9917 7.7883 39 1 5.1750 -1.7685 7.1623 40 1 5.3520 -0.3250 6.0280 41 1 2.0824 1.0650 -2.4203 42 1 2.9025 -0.0959 -4.4309 43 1 3.3136 -2.5229 -4.3697 44 1 2.8948 -3.7908 -2.3008 45 1 2.0823 -2.6286 -0.2878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830633713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:07 Heat of formation + Delta-G solvation = -97.683583 kcal Electronic energy + Delta-G solvation = -28100.961944 eV Core-core repulsion = 24210.276400 eV Total energy + Delta-G solvation = -3890.685544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.95614 -38.57921 -38.49774 -37.92862 -36.79818 -35.50205 -34.08953 -33.06892 -31.75144 -30.17165 -29.82732 -27.50225 -27.32691 -24.04926 -23.22029 -22.99411 -21.57398 -21.23972 -20.28172 -18.75395 -18.62742 -18.27136 -17.39320 -16.90640 -16.86568 -16.67544 -16.27770 -16.02431 -15.55767 -15.49827 -15.24313 -14.93415 -14.87046 -14.27564 -14.09313 -13.76554 -13.66162 -13.42422 -13.31984 -13.13016 -13.03605 -12.94386 -12.90391 -12.85867 -12.83244 -12.55681 -12.44461 -12.22278 -12.12469 -11.92102 -11.68401 -11.55794 -11.01095 -10.87818 -10.57124 -10.51967 -9.87902 -9.81696 -9.68822 -8.19973 -6.34283 -0.51879 0.39080 0.50518 1.36417 1.40056 1.51110 2.01073 2.39346 2.85119 2.92652 3.07305 3.23399 3.37575 3.41231 3.59587 3.61739 3.96294 3.98479 4.13576 4.16963 4.27054 4.31553 4.43154 4.51233 4.58466 4.59739 4.63102 4.68673 4.78537 4.84353 4.90497 4.92857 4.97706 5.10654 5.17656 5.20950 5.22150 5.46266 5.58385 5.58519 5.63440 5.64507 5.71621 6.10343 6.14270 6.22543 6.71950 6.76674 7.38081 8.87255 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003801 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.390025 B = 7365.220029 C = 8555.063127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.183 3.817 3 O -0.551 6.551 4 C 0.083 3.917 5 N -1.108 6.108 6 S 2.625 3.375 7 O -0.996 6.996 8 O -0.991 6.991 9 C -0.552 4.552 10 C 0.010 3.990 11 C -0.534 4.534 12 H 0.048 0.952 13 C 0.045 3.955 14 N -0.891 5.891 15 Si 0.934 3.066 16 H -0.274 1.274 17 H -0.275 1.275 18 H -0.272 1.272 19 C -0.198 4.198 20 C -0.138 4.138 21 C -0.122 4.122 22 C -0.105 4.105 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.132 4.132 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.392 0.608 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.423 0.577 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.266 0.734 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.139 0.861 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.132 0.868 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 8.644 -17.722 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.141 3.859 3 O -0.359 6.359 4 C -0.044 4.044 5 N -0.869 5.869 6 S 2.722 3.278 7 O -0.986 6.986 8 O -0.981 6.981 9 C -0.685 4.685 10 C 0.008 3.992 11 C -0.571 4.571 12 H 0.066 0.934 13 C -0.158 4.158 14 N -0.527 5.527 15 Si 0.760 3.240 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.197 1.197 19 C -0.235 4.235 20 C -0.177 4.177 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.150 4.150 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.242 0.758 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.260 0.740 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.150 0.850 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.933 8.190 -17.260 19.328 hybrid contribution 1.028 -1.014 0.278 1.470 sum -1.905 7.176 -16.982 18.534 Atomic orbital electron populations 1.21790 0.91464 1.03037 1.03412 1.19886 0.95230 0.81880 0.88933 1.86518 1.28443 1.24315 1.96616 1.22241 0.98772 0.98157 0.85226 1.55364 1.74058 1.34474 1.23033 1.04317 0.78132 0.72805 0.72559 1.93467 1.73346 1.67150 1.64630 1.93477 1.78640 1.42187 1.83802 1.29869 1.22799 1.08594 1.07196 1.18418 1.02218 0.92742 0.85791 1.20727 1.00032 0.90128 1.46243 0.93419 1.25483 0.94434 1.01985 0.93910 1.70021 1.11429 1.33141 1.38144 0.85868 0.78490 0.81111 0.78575 1.19839 1.20057 1.19729 1.23250 1.00889 0.99045 1.00326 1.22513 0.90116 1.01553 1.03525 1.20366 1.01515 0.94259 0.96196 1.21150 0.98379 1.00867 0.91872 1.21483 0.98968 0.94857 0.98936 1.21515 0.99235 0.94817 0.98411 1.21409 0.99345 1.00884 0.93181 1.21357 0.99775 0.94527 0.99322 0.91076 0.91429 0.90604 0.75813 0.90238 0.89870 0.73982 0.85782 0.84804 0.92517 0.88319 0.89977 0.91560 0.89326 0.84308 0.83667 0.83971 0.84969 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.60 71.98 0.62 -2.35 16 2 C 0.18 3.80 0.89 -11.54 -0.01 3.79 16 3 O -0.55 -9.93 11.77 -148.98 -1.75 -11.68 16 4 C 0.08 2.09 4.75 86.38 0.41 2.50 16 5 N -1.11 -31.45 5.29 -187.48 -0.99 -32.44 16 6 S 2.62 103.67 5.19 -56.49 -0.29 103.37 16 7 O -1.00 -43.08 18.08 -127.65 -2.31 -45.39 16 8 O -0.99 -47.11 17.16 -127.65 -2.19 -49.30 16 9 C -0.55 -22.20 5.93 71.98 0.43 -21.77 16 10 C 0.01 0.50 1.32 -52.93 -0.07 0.43 16 11 C -0.53 -29.41 8.18 25.60 0.21 -29.20 16 12 H 0.05 2.75 7.83 -2.91 -0.02 2.73 16 13 C 0.04 2.44 5.38 84.66 0.46 2.89 16 14 N -0.89 -48.33 12.98 21.45 0.28 -48.06 16 15 Si 0.93 43.67 29.55 68.60 2.03 45.70 16 16 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.20 -8.47 9.96 30.62 0.30 -8.17 16 20 C -0.14 -6.12 9.49 30.62 0.29 -5.83 16 21 C -0.12 -2.46 4.81 -19.87 -0.10 -2.56 16 22 C -0.10 -1.79 9.35 22.27 0.21 -1.58 16 23 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 24 C -0.12 -1.95 10.05 22.27 0.22 -1.72 16 25 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 26 C -0.13 -2.90 9.14 22.27 0.20 -2.70 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.47 6.89 -2.39 -0.02 1.45 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.39 4.82 9.04 -74.05 -0.67 4.15 16 31 H 0.08 2.25 5.77 -2.39 -0.01 2.23 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.42 10.47 7.54 -96.74 -0.73 9.74 16 34 H 0.12 5.20 8.14 -2.38 -0.02 5.18 16 35 H 0.13 4.33 8.09 -2.39 -0.02 4.31 16 36 H 0.27 13.64 8.32 -92.71 -0.77 12.87 16 37 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 39 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 40 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.14 2.03 7.48 -2.91 -0.02 2.00 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 44 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 45 H 0.12 2.83 6.05 -2.91 -0.02 2.81 16 Total: -1.00 -70.28 385.60 -2.00 -72.27 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.39 Total: 35.73 kcal Atomic # 6 Polarization: -73.84 SS G_CDS: 3.62 Total: -70.21 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -0.71 Total: -80.50 kcal Atomic # 8 Polarization: -100.12 SS G_CDS: -6.25 Total: -106.37 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 103.67 SS G_CDS: -0.29 Total: 103.37 kcal Total: -70.28 -2.00 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830633713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.409 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds