Wall clock time and date at job start Tue Mar 31 2020 22:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47302 * 2 1 4 4 H 1.09000 * 109.47285 * 304.99990 * 3 2 1 5 5 N 1.46503 * 109.46947 * 64.99518 * 3 2 1 6 6 C 1.34773 * 120.00137 * 274.99889 * 5 3 2 7 7 O 1.21606 * 120.00024 * 0.02562 * 6 5 3 8 8 C 1.47428 * 119.99832 * 180.02562 * 6 5 3 9 9 C 1.39684 * 120.21411 * 359.97438 * 8 6 5 10 10 C 1.37808 * 119.93601 * 180.02562 * 9 8 6 11 11 C 1.38665 * 120.38276 * 0.02562 * 10 9 8 12 12 C 1.37912 * 120.43659 * 359.97438 * 11 10 9 13 13 C 1.39112 * 120.05010 * 0.02562 * 12 11 10 14 14 S 1.76204 * 120.18728 * 179.97438 * 13 12 11 15 15 C 1.76201 * 99.99939 * 351.06317 * 14 13 12 16 16 H 1.08000 * 119.99910 * 0.15801 * 15 14 13 17 17 C 1.38802 * 119.99799 * 180.15279 * 15 14 13 18 18 N 1.31558 * 119.99841 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00359 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47256 * 89.99546 * 19 17 15 21 21 H 1.48501 * 109.47123 * 210.00290 * 19 17 15 22 22 H 1.48500 * 109.46804 * 329.99847 * 19 17 15 23 23 C 1.52994 * 109.47160 * 184.99521 * 3 2 1 24 24 O 1.42904 * 109.46758 * 65.00378 * 23 3 2 25 25 C 1.42904 * 113.99746 * 198.42512 * 24 23 3 26 26 O 1.42908 * 109.47316 * 184.99734 * 23 3 2 27 27 C 1.42896 * 113.99908 * 164.76936 * 26 23 3 28 28 H 1.09002 * 109.47044 * 300.00566 * 1 2 3 29 29 H 1.09003 * 109.46796 * 59.99627 * 1 2 3 30 30 H 1.08990 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47442 * 239.99841 * 2 1 3 32 32 H 1.09004 * 109.47005 * 119.99617 * 2 1 3 33 33 H 0.97001 * 119.99635 * 95.00067 * 5 3 2 34 34 H 1.07996 * 120.03185 * 0.02562 * 9 8 6 35 35 H 1.07998 * 119.80933 * 180.02562 * 10 9 8 36 36 H 1.08000 * 119.77700 * 180.27253 * 11 10 9 37 37 H 1.07997 * 119.97048 * 180.02562 * 12 11 10 38 38 H 0.97004 * 119.99685 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.47934 * 305.00092 * 23 3 2 40 40 H 1.09005 * 109.46990 * 168.62302 * 25 24 23 41 41 H 1.08995 * 109.47541 * 288.62464 * 25 24 23 42 42 H 1.09001 * 109.47067 * 48.62950 * 25 24 23 43 43 H 1.08999 * 109.46714 * 76.59719 * 27 26 23 44 44 H 1.09005 * 109.46876 * 196.59259 * 27 26 23 45 45 H 1.08992 * 109.47502 * 316.59347 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6645 1.3669 7 8 -0.3416 2.6319 0.4317 8 6 0.0453 3.3241 2.6264 9 6 0.9338 3.3636 3.7035 10 6 0.5633 3.9812 4.8784 11 6 -0.6888 4.5648 4.9993 12 6 -1.5783 4.5349 3.9458 13 6 -1.2230 3.9162 2.7515 14 16 -2.3569 3.8753 1.4034 15 6 -3.8018 4.4938 2.2000 16 1 -3.7679 4.7656 3.2447 17 6 -4.9833 4.6316 1.4848 18 7 -6.0620 5.0939 2.0794 19 14 -5.0420 4.1609 -0.3219 20 1 -5.4226 2.7312 -0.4489 21 1 -6.0447 5.0042 -1.0209 22 1 -3.7050 4.3732 -0.9324 23 6 3.5648 1.4443 -0.1256 24 8 3.9385 0.9112 -1.3977 25 6 5.2992 0.4804 -1.4703 26 8 4.0509 2.7831 -0.0088 27 6 5.4566 2.8721 0.2321 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2719 2.1232 1.9978 34 1 1.9102 2.9105 3.6156 35 1 1.2520 4.0109 5.7097 36 1 -0.9674 5.0501 5.9231 37 1 -2.5513 4.9921 4.0481 38 1 -6.8876 5.1906 1.5795 39 1 3.9954 0.8312 0.6660 40 1 5.4511 -0.0905 -2.3864 41 1 5.9562 1.3501 -1.4710 42 1 5.5280 -0.1473 -0.6091 43 1 5.9968 2.6823 -0.6954 44 1 5.7002 3.8701 0.5967 45 1 5.7449 2.1321 0.9785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834415772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:44 Heat of formation + Delta-G solvation = -92.666466 kcal Electronic energy + Delta-G solvation = -27785.898196 eV Core-core repulsion = 23895.430210 eV Total energy + Delta-G solvation = -3890.467985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.23181 -39.23316 -37.66217 -36.28561 -35.41904 -32.68816 -32.42520 -30.44176 -30.34527 -29.42168 -26.72942 -26.33519 -25.87629 -23.57539 -23.06063 -22.05031 -20.99136 -20.22630 -18.37474 -17.63770 -17.51934 -17.23082 -16.32829 -15.94227 -15.44202 -15.10787 -15.03643 -14.68202 -14.54038 -14.44476 -13.93806 -13.86750 -13.75920 -13.37774 -13.06751 -12.95953 -12.84999 -12.54389 -12.15094 -11.91130 -11.86346 -11.73319 -11.37442 -11.25435 -11.15375 -11.03490 -10.84634 -10.69586 -10.47145 -10.37304 -10.08910 -9.75166 -9.66317 -9.42712 -8.85563 -8.79275 -8.39921 -8.17718 -6.77154 -6.45023 -4.15566 1.44581 1.93617 2.88051 2.93209 3.23863 3.27737 3.39473 3.44567 3.50022 3.86469 4.18093 4.33444 4.40845 4.58412 4.67592 4.74662 4.83029 4.85694 4.98028 5.08757 5.10435 5.19039 5.23822 5.25178 5.26750 5.47636 5.53858 5.55856 5.78184 5.91096 5.94026 6.07505 6.13130 6.28552 6.32296 6.51609 6.59869 6.68962 6.71475 6.77255 6.78899 6.97483 7.07625 7.47308 7.78235 7.80898 8.37211 8.70093 8.99191 10.62274 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.003640 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.431108 B = 7690.621186 C = 9078.869886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.166 3.834 4 H 0.105 0.895 5 N -0.723 5.723 6 C 0.560 3.440 7 O -0.504 6.504 8 C -0.170 4.170 9 C -0.064 4.064 10 C -0.178 4.178 11 C -0.077 4.077 12 C -0.144 4.144 13 C -0.029 4.029 14 S 0.089 5.911 15 C -0.580 4.580 16 H 0.106 0.894 17 C 0.103 3.897 18 N -0.864 5.864 19 Si 0.849 3.151 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.234 1.234 23 C 0.239 3.761 24 O -0.385 6.385 25 C 0.017 3.983 26 O -0.382 6.382 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.394 0.606 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.146 0.854 38 H 0.274 0.726 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.392 -8.900 -0.695 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.060 3.940 4 H 0.123 0.877 5 N -0.378 5.378 6 C 0.349 3.651 7 O -0.381 6.381 8 C -0.185 4.185 9 C -0.084 4.084 10 C -0.202 4.202 11 C -0.099 4.099 12 C -0.169 4.169 13 C -0.148 4.148 14 S 0.350 5.650 15 C -0.726 4.726 16 H 0.123 0.877 17 C -0.107 4.107 18 N -0.498 5.498 19 Si 0.673 3.327 20 H -0.187 1.187 21 H -0.195 1.195 22 H -0.157 1.157 23 C 0.143 3.857 24 O -0.304 6.304 25 C -0.079 4.079 26 O -0.302 6.302 27 C -0.078 4.078 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 22.197 -9.046 -2.984 24.154 hybrid contribution 0.509 0.137 1.360 1.458 sum 22.705 -8.909 -1.624 24.445 Atomic orbital electron populations 1.21802 0.93660 1.00715 1.04124 1.21892 0.98029 0.94439 1.02080 1.20609 0.88870 0.94895 0.89626 0.87656 1.45584 1.17167 1.59755 1.15264 1.18140 0.81000 0.77946 0.87967 1.90777 1.49767 1.57976 1.39536 1.19149 0.95966 1.08529 0.94813 1.20889 0.97221 0.97573 0.92756 1.20708 0.97432 1.04215 0.97796 1.21132 0.93503 0.97283 0.97946 1.21556 1.01378 1.01506 0.92473 1.22487 0.96588 0.96289 0.99445 1.84079 1.01549 1.70061 1.09336 1.23549 0.96387 1.50653 1.01981 0.87685 1.24783 0.94362 0.92798 0.98802 1.69914 1.01040 1.41486 1.37366 0.86886 0.81156 0.80024 0.84639 1.18739 1.19457 1.15734 1.23667 0.94760 0.81861 0.85415 1.88039 1.27835 1.79958 1.34605 1.23139 0.83082 0.99147 1.02524 1.88159 1.22800 1.27693 1.91499 1.23101 0.82028 1.02910 0.99737 0.91640 0.91722 0.93561 0.90585 0.92225 0.77098 0.87068 0.86867 0.86664 0.83708 0.91573 0.92397 0.89275 0.93025 0.93793 0.93161 0.89414 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.51 37.16 0.32 -1.82 16 2 C -0.13 -1.49 5.56 -26.73 -0.15 -1.64 16 3 C 0.17 2.15 2.30 -67.93 -0.16 2.00 16 4 H 0.11 1.69 7.58 -51.93 -0.39 1.30 16 5 N -0.72 -9.95 4.75 -54.88 -0.26 -10.21 16 6 C 0.56 10.19 6.32 -12.52 -0.08 10.11 16 7 O -0.50 -10.77 10.90 5.27 0.06 -10.72 16 8 C -0.17 -3.21 5.89 -104.75 -0.62 -3.83 16 9 C -0.06 -0.97 9.53 -39.20 -0.37 -1.34 16 10 C -0.18 -2.63 10.02 -39.58 -0.40 -3.02 16 11 C -0.08 -1.29 10.03 -39.54 -0.40 -1.69 16 12 C -0.14 -3.01 9.22 -39.38 -0.36 -3.37 16 13 C -0.03 -0.65 6.14 -38.39 -0.24 -0.88 16 14 S 0.09 2.25 16.53 -107.50 -1.78 0.47 16 15 C -0.58 -16.33 9.59 30.94 0.30 -16.03 16 16 H 0.11 3.05 5.15 -52.49 -0.27 2.78 16 17 C 0.10 2.94 5.50 -17.46 -0.10 2.84 16 18 N -0.86 -25.37 13.96 55.49 0.77 -24.59 16 19 Si 0.85 21.09 27.74 -169.99 -4.71 16.38 16 20 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.23 -5.79 6.74 56.52 0.38 -5.41 16 23 C 0.24 2.55 2.41 37.15 0.09 2.64 16 24 O -0.38 -4.18 10.05 -59.04 -0.59 -4.77 16 25 C 0.02 0.12 10.33 101.05 1.04 1.16 16 26 O -0.38 -4.46 10.36 -59.04 -0.61 -5.07 16 27 C 0.02 0.14 10.09 101.05 1.02 1.16 16 28 H 0.06 1.12 5.64 -51.93 -0.29 0.83 16 29 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.39 4.38 6.63 -40.82 -0.27 4.10 16 34 H 0.11 1.25 6.40 -52.49 -0.34 0.92 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.15 3.29 5.04 -52.49 -0.26 3.02 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 39 H 0.06 0.48 7.44 -51.93 -0.39 0.09 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.32 5.09 -51.93 -0.26 0.05 16 42 H 0.04 0.23 7.86 -51.93 -0.41 -0.18 16 43 H 0.05 0.34 5.48 -51.93 -0.28 0.05 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.04 0.24 7.78 -51.93 -0.40 -0.16 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -32.72 369.32 -7.73 -40.45 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.08 Total: 6.20 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.10 Total: -13.71 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.51 Total: -34.80 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.15 Total: -20.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.38 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.78 Total: 0.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.72 -7.73 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834415772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.215 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds