Wall clock time and date at job start Tue Mar 31 2020 23:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 5 5 C 1.52997 * 109.47420 * 64.99742 * 4 2 1 6 6 C 1.52997 * 109.47629 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47444 * 180.02562 * 6 5 4 8 8 C 1.38235 * 119.99613 * 269.72444 * 7 6 5 9 9 C 1.38238 * 119.99669 * 179.76168 * 8 7 6 10 10 C 1.38237 * 120.00044 * 0.49293 * 9 8 7 11 11 C 1.38236 * 119.99725 * 359.77914 * 10 9 8 12 12 C 1.38234 * 120.00383 * 359.96363 * 11 10 9 13 13 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 14 14 O 1.21283 * 119.99488 * 120.00024 * 13 2 1 15 15 N 1.34777 * 120.00290 * 300.00464 * 13 2 1 16 16 S 1.65597 * 119.99988 * 180.27691 * 15 13 2 17 17 O 1.42100 * 104.27735 * 180.79375 * 16 15 13 18 18 O 1.42101 * 104.27674 * 308.65304 * 16 15 13 19 19 C 1.81402 * 104.45066 * 64.71800 * 16 15 13 20 20 C 1.50698 * 109.46947 * 179.97438 * 19 16 15 21 21 H 1.07996 * 120.00356 * 0.02562 * 20 19 16 22 22 C 1.37885 * 120.00106 * 180.02562 * 20 19 16 23 23 N 1.31517 * 119.99651 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00321 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47079 * 89.99856 * 24 22 20 26 26 H 1.48502 * 109.47323 * 209.99777 * 24 22 20 27 27 H 1.48504 * 109.47161 * 330.00001 * 24 22 20 28 28 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 30 30 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 31 31 H 1.08997 * 109.47937 * 185.00219 * 4 2 1 32 32 H 1.09002 * 109.47237 * 304.99957 * 4 2 1 33 33 H 1.09006 * 109.47224 * 300.00532 * 5 4 2 34 34 H 1.09002 * 109.47224 * 60.00129 * 5 4 2 35 35 H 1.09000 * 109.46656 * 299.99963 * 6 5 4 36 36 H 1.09002 * 109.47476 * 59.99940 * 6 5 4 37 37 H 1.07995 * 120.00408 * 359.97438 * 8 7 6 38 38 H 1.08003 * 120.00253 * 180.24758 * 9 8 7 39 39 H 1.07996 * 120.00518 * 179.77009 * 10 9 8 40 40 H 1.08008 * 120.00020 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00122 * 179.97438 * 12 11 10 42 42 H 0.97001 * 119.99727 * 359.97438 * 15 13 2 43 43 H 1.08990 * 109.47555 * 300.00369 * 19 16 15 44 44 H 1.09004 * 109.46533 * 60.00490 * 19 16 15 45 45 H 0.97001 * 120.00116 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6354 0.0688 -2.4952 6 6 2.1448 -0.6527 -3.7445 7 6 1.7467 0.1258 -4.9719 8 6 0.5433 -0.1394 -5.5983 9 6 0.1758 0.5781 -6.7212 10 6 1.0163 1.5538 -7.2237 11 6 2.2223 1.8151 -6.6005 12 6 2.5874 1.1013 -5.4745 13 6 2.0324 -0.7103 1.2306 14 8 2.7297 -1.6964 1.1193 15 7 1.7068 -0.2498 2.4546 16 16 2.2644 -1.0264 3.8068 17 8 1.7150 -0.2858 4.8879 18 8 1.9143 -2.3877 3.5985 19 6 4.0648 -0.8149 3.7400 20 6 4.6940 -1.4866 4.9334 21 1 4.0730 -1.9906 5.6591 22 6 6.0626 -1.4576 5.0988 23 7 6.8189 -0.8443 4.2147 24 14 6.8426 -2.2907 6.5775 25 1 7.1626 -3.7009 6.2395 26 1 8.0900 -1.5752 6.9480 27 1 5.8953 -2.2584 7.7207 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 3.1264 -0.7995 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 0.5490 0.1471 -2.5389 34 1 2.0699 1.0674 -2.4494 35 1 3.2311 -0.7312 -3.7010 36 1 1.7099 -1.6512 -3.7902 37 1 -0.1113 -0.9047 -5.2084 38 1 -0.7662 0.3737 -7.2084 39 1 0.7310 2.1119 -8.1032 40 1 2.8792 2.5772 -6.9933 41 1 3.5297 1.3052 -4.9879 42 1 1.1493 0.5390 2.5436 43 1 4.4498 -1.2644 2.8248 44 1 4.3065 0.2479 3.7525 45 1 7.7817 -0.8242 4.3308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835408675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:10 Heat of formation + Delta-G solvation = -119.186863 kcal Electronic energy + Delta-G solvation = -26399.100022 eV Core-core repulsion = 22507.482026 eV Total energy + Delta-G solvation = -3891.617996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.09774 -39.53229 -36.41772 -36.08072 -35.16282 -34.23629 -33.35457 -33.30533 -31.15499 -30.00188 -29.05567 -26.53655 -24.74740 -23.54093 -22.83914 -22.27793 -21.01067 -20.14438 -19.16587 -17.58370 -17.07785 -17.02304 -16.45622 -15.96909 -15.70031 -15.46466 -15.20942 -14.84252 -14.55863 -14.40555 -14.19315 -13.90043 -13.66461 -13.47389 -13.20785 -12.81503 -12.53708 -12.38097 -12.17090 -12.12258 -11.91151 -11.79556 -11.52775 -11.46670 -11.28929 -11.19459 -11.16345 -11.07057 -10.94428 -10.90609 -10.65313 -10.64524 -10.45423 -9.90674 -9.72183 -9.19567 -9.16157 -8.93745 -8.71074 -6.33535 -4.44552 1.04572 1.09185 1.12604 2.42335 3.19703 3.22195 3.27741 3.32800 3.51049 4.19980 4.29433 4.48201 4.55809 4.57814 4.64948 4.73989 4.76948 4.85568 4.96324 4.99032 5.07448 5.16749 5.22063 5.25911 5.28449 5.31658 5.37460 5.47661 5.57546 5.64682 5.73834 5.75915 5.79134 5.90407 5.93688 6.13574 6.19905 6.24154 6.27790 6.40722 6.58471 6.74265 6.76246 7.02344 7.41667 7.72938 7.81217 8.56597 9.22712 10.78294 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.002141 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.062149 B =13076.164307 C =14095.730755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 H 0.106 0.894 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.084 4.084 7 C -0.077 4.077 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.129 4.129 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.535 3.465 14 O -0.486 6.486 15 N -1.061 6.061 16 S 2.553 3.447 17 O -0.971 6.971 18 O -0.954 6.954 19 C -0.404 4.404 20 C -0.535 4.535 21 H 0.070 0.930 22 C 0.077 3.923 23 N -0.877 5.877 24 Si 0.907 3.093 25 H -0.273 1.273 26 H -0.280 1.280 27 H -0.266 1.266 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.424 0.576 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.876 7.405 -20.964 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 H 0.124 0.876 4 C -0.145 4.145 5 C -0.150 4.150 6 C -0.122 4.122 7 C -0.077 4.077 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.147 4.147 11 C -0.137 4.137 12 C -0.136 4.136 13 C 0.320 3.680 14 O -0.357 6.357 15 N -0.821 5.821 16 S 2.656 3.344 17 O -0.961 6.961 18 O -0.944 6.944 19 C -0.541 4.541 20 C -0.574 4.574 21 H 0.089 0.911 22 C -0.130 4.130 23 N -0.513 5.513 24 Si 0.733 3.267 25 H -0.198 1.198 26 H -0.206 1.206 27 H -0.191 1.191 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.258 0.742 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.794 6.264 -20.499 24.466 hybrid contribution 0.656 0.443 0.409 0.891 sum -11.138 6.708 -20.090 23.931 Atomic orbital electron populations 1.21861 0.92691 1.03224 1.02853 1.21434 0.97893 1.01307 0.92877 0.87642 1.21500 1.02492 0.99218 0.91279 1.21627 1.01302 0.99202 0.92852 1.20659 1.01875 0.98384 0.91258 1.19986 0.94478 0.96596 0.96609 1.21089 0.96439 1.00103 0.96064 1.21151 0.99595 0.96384 0.96645 1.21137 0.94866 0.98514 1.00221 1.21164 0.96794 0.99681 0.96061 1.21118 0.99780 0.96163 0.96551 1.20592 0.78717 0.83853 0.84827 1.90904 1.34578 1.23880 1.86311 1.55488 1.60912 1.42714 1.22937 1.07096 0.81138 0.74114 0.72068 1.93517 1.79157 1.72788 1.50667 1.93526 1.83642 1.33552 1.83656 1.27598 1.12388 1.06751 1.07351 1.20290 0.93186 1.37532 1.06426 0.91148 1.24928 0.96633 0.94456 0.96958 1.69956 1.05568 1.40948 1.34831 0.86334 0.78824 0.79647 0.81926 1.19819 1.20586 1.19067 0.91690 0.91961 0.90879 0.90383 0.90783 0.91472 0.91645 0.90627 0.90737 0.86093 0.86250 0.86351 0.86198 0.85982 0.74239 0.88387 0.89762 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.85 37.16 0.33 -0.94 16 2 C -0.11 -1.19 2.72 -91.77 -0.25 -1.44 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.11 4.03 -26.74 -0.11 -1.22 16 5 C -0.11 -0.90 4.95 -26.73 -0.13 -1.03 16 6 C -0.08 -0.68 5.35 -27.88 -0.15 -0.83 16 7 C -0.08 -0.65 5.13 -104.62 -0.54 -1.19 16 8 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 9 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 10 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 11 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 12 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 13 C 0.53 8.48 6.89 -10.98 -0.08 8.40 16 14 O -0.49 -9.86 14.01 -11.49 -0.16 -10.02 16 15 N -1.06 -16.69 5.50 31.22 0.17 -16.52 16 16 S 2.55 55.28 5.03 -107.50 -0.54 54.74 16 17 O -0.97 -22.20 18.08 -57.54 -1.04 -23.24 16 18 O -0.95 -23.77 17.05 -64.76 -1.10 -24.87 16 19 C -0.40 -10.07 5.64 36.00 0.20 -9.86 16 20 C -0.53 -15.07 9.13 -34.44 -0.31 -15.38 16 21 H 0.07 1.94 7.71 -52.49 -0.40 1.53 16 22 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 23 N -0.88 -25.12 13.29 55.43 0.74 -24.39 16 24 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 30 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 31 H 0.08 0.92 7.95 -51.93 -0.41 0.50 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.49 6.57 -51.93 -0.34 0.15 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.42 4.80 8.21 -34.47 -0.28 4.52 16 43 H 0.10 2.55 7.18 -51.93 -0.37 2.18 16 44 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 45 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -36.30 388.72 -10.94 -47.25 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.75 Total: 3.08 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -3.09 Total: -28.10 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.91 Total: -40.91 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -2.31 Total: -58.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 55.28 SS G_CDS: -0.54 Total: 54.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.30 -10.94 -47.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.938 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds