Wall clock time and date at job start Tue Mar 31 2020 23:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 5 5 C 1.52997 * 109.47420 * 64.99742 * 4 2 1 6 6 C 1.52997 * 109.47629 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47444 * 180.02562 * 6 5 4 8 8 C 1.38235 * 119.99613 * 269.72444 * 7 6 5 9 9 C 1.38238 * 119.99669 * 179.76168 * 8 7 6 10 10 C 1.38237 * 120.00044 * 0.49293 * 9 8 7 11 11 C 1.38236 * 119.99725 * 359.77914 * 10 9 8 12 12 C 1.38234 * 120.00383 * 359.96363 * 11 10 9 13 13 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 14 14 O 1.21283 * 119.99488 * 120.00024 * 13 2 1 15 15 N 1.34777 * 120.00290 * 300.00464 * 13 2 1 16 16 S 1.65597 * 119.99988 * 180.27691 * 15 13 2 17 17 O 1.42100 * 104.27735 * 180.79375 * 16 15 13 18 18 O 1.42101 * 104.27674 * 308.65304 * 16 15 13 19 19 C 1.81402 * 104.45066 * 64.71800 * 16 15 13 20 20 C 1.50698 * 109.46947 * 179.97438 * 19 16 15 21 21 H 1.07996 * 120.00356 * 0.02562 * 20 19 16 22 22 C 1.37885 * 120.00106 * 180.02562 * 20 19 16 23 23 N 1.31517 * 119.99651 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00321 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47079 * 89.99856 * 24 22 20 26 26 H 1.48502 * 109.47323 * 209.99777 * 24 22 20 27 27 H 1.48504 * 109.47161 * 330.00001 * 24 22 20 28 28 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 30 30 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 31 31 H 1.08997 * 109.47937 * 185.00219 * 4 2 1 32 32 H 1.09002 * 109.47237 * 304.99957 * 4 2 1 33 33 H 1.09006 * 109.47224 * 300.00532 * 5 4 2 34 34 H 1.09002 * 109.47224 * 60.00129 * 5 4 2 35 35 H 1.09000 * 109.46656 * 299.99963 * 6 5 4 36 36 H 1.09002 * 109.47476 * 59.99940 * 6 5 4 37 37 H 1.07995 * 120.00408 * 359.97438 * 8 7 6 38 38 H 1.08003 * 120.00253 * 180.24758 * 9 8 7 39 39 H 1.07996 * 120.00518 * 179.77009 * 10 9 8 40 40 H 1.08008 * 120.00020 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00122 * 179.97438 * 12 11 10 42 42 H 0.97001 * 119.99727 * 359.97438 * 15 13 2 43 43 H 1.08990 * 109.47555 * 300.00369 * 19 16 15 44 44 H 1.09004 * 109.46533 * 60.00490 * 19 16 15 45 45 H 0.97001 * 120.00116 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6354 0.0688 -2.4952 6 6 2.1448 -0.6527 -3.7445 7 6 1.7467 0.1258 -4.9719 8 6 0.5433 -0.1394 -5.5983 9 6 0.1758 0.5781 -6.7212 10 6 1.0163 1.5538 -7.2237 11 6 2.2223 1.8151 -6.6005 12 6 2.5874 1.1013 -5.4745 13 6 2.0324 -0.7103 1.2306 14 8 2.7297 -1.6964 1.1193 15 7 1.7068 -0.2498 2.4546 16 16 2.2644 -1.0264 3.8068 17 8 1.7150 -0.2858 4.8879 18 8 1.9143 -2.3877 3.5985 19 6 4.0648 -0.8149 3.7400 20 6 4.6940 -1.4866 4.9334 21 1 4.0730 -1.9906 5.6591 22 6 6.0626 -1.4576 5.0988 23 7 6.8189 -0.8443 4.2147 24 14 6.8426 -2.2907 6.5775 25 1 7.1626 -3.7009 6.2395 26 1 8.0900 -1.5752 6.9480 27 1 5.8953 -2.2584 7.7207 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 3.1264 -0.7995 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 0.5490 0.1471 -2.5389 34 1 2.0699 1.0674 -2.4494 35 1 3.2311 -0.7312 -3.7010 36 1 1.7099 -1.6512 -3.7902 37 1 -0.1113 -0.9047 -5.2084 38 1 -0.7662 0.3737 -7.2084 39 1 0.7310 2.1119 -8.1032 40 1 2.8792 2.5772 -6.9933 41 1 3.5297 1.3052 -4.9879 42 1 1.1493 0.5390 2.5436 43 1 4.4498 -1.2644 2.8248 44 1 4.3065 0.2479 3.7525 45 1 7.7817 -0.8242 4.3308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835408675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:09 Heat of formation + Delta-G solvation = -142.973381 kcal Electronic energy + Delta-G solvation = -26400.131483 eV Core-core repulsion = 22507.482026 eV Total energy + Delta-G solvation = -3892.649457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.38394 -40.12430 -38.13449 -37.08977 -37.03166 -35.65601 -35.43246 -34.06939 -31.70262 -31.12095 -30.66845 -27.23024 -25.83213 -25.48040 -23.39178 -23.21193 -21.66226 -21.18725 -20.75239 -19.29827 -18.55277 -18.31886 -17.56446 -17.50904 -16.81817 -16.51787 -16.23838 -16.09460 -16.04830 -15.80310 -15.33463 -14.64760 -14.52545 -14.23427 -14.16380 -14.15263 -13.92823 -13.69761 -13.50091 -13.42557 -13.21241 -13.11246 -13.07250 -12.77582 -12.75390 -12.56814 -12.47249 -12.20866 -12.02841 -11.85895 -11.82768 -11.78999 -11.60723 -11.36600 -11.13671 -10.98093 -10.81017 -9.76176 -9.52066 -8.44833 -6.64027 -0.73513 0.51482 0.55930 1.11736 1.35787 1.38267 1.49872 1.64584 2.28417 2.75626 2.89278 2.93279 3.15556 3.41396 3.71167 3.91692 3.93322 4.04545 4.06693 4.23042 4.31817 4.35237 4.40362 4.60059 4.61476 4.64412 4.66599 4.71976 4.73844 4.85491 4.90993 4.94751 5.04656 5.14900 5.19838 5.26578 5.27150 5.28298 5.42489 5.52510 5.64663 5.66049 5.69043 5.77965 5.81762 6.19699 6.45127 6.54246 7.07653 8.68153 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.002141 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.062149 B =13076.164307 C =14095.730755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.138 0.862 4 C -0.106 4.106 5 C -0.101 4.101 6 C -0.083 4.083 7 C -0.088 4.088 8 C -0.130 4.130 9 C -0.127 4.127 10 C -0.137 4.137 11 C -0.128 4.128 12 C -0.133 4.133 13 C 0.528 3.472 14 O -0.534 6.534 15 N -1.042 6.042 16 S 2.598 3.402 17 O -0.981 6.981 18 O -0.987 6.987 19 C -0.421 4.421 20 C -0.570 4.570 21 H 0.067 0.933 22 C 0.024 3.976 23 N -0.907 5.907 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.266 1.266 27 H -0.259 1.259 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.126 0.874 42 H 0.446 0.554 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 8.711 -21.716 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 H 0.155 0.845 4 C -0.144 4.144 5 C -0.138 4.138 6 C -0.121 4.121 7 C -0.088 4.088 8 C -0.148 4.148 9 C -0.145 4.145 10 C -0.155 4.155 11 C -0.146 4.146 12 C -0.151 4.151 13 C 0.317 3.683 14 O -0.408 6.408 15 N -0.808 5.808 16 S 2.698 3.302 17 O -0.971 6.971 18 O -0.977 6.977 19 C -0.556 4.556 20 C -0.608 4.608 21 H 0.085 0.915 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.789 3.211 25 H -0.192 1.192 26 H -0.190 1.190 27 H -0.183 1.183 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.286 0.714 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.186 7.605 -21.240 26.131 hybrid contribution 1.041 0.076 0.523 1.168 sum -12.144 7.681 -20.717 25.213 Atomic orbital electron populations 1.21944 0.90394 1.03282 1.05040 1.21585 0.99578 1.01897 0.89484 0.84480 1.21486 1.01159 0.99265 0.92522 1.21535 1.02143 0.98879 0.91236 1.20625 1.01474 0.98482 0.91487 1.20050 0.94933 0.96898 0.96874 1.21299 0.96521 1.00545 0.96414 1.21442 1.00382 0.96160 0.96506 1.21445 0.94693 0.98577 1.00759 1.21425 0.97324 0.99967 0.95920 1.21296 1.00138 0.96560 0.97134 1.21736 0.77478 0.83289 0.85799 1.90892 1.36829 1.26330 1.86714 1.54943 1.60849 1.43432 1.21584 1.05437 0.78915 0.73344 0.72506 1.93494 1.78449 1.72884 1.52286 1.93482 1.83380 1.36144 1.84682 1.27656 1.16262 1.06276 1.05386 1.20737 0.94176 1.38300 1.07626 0.91456 1.25893 0.97178 0.94934 0.99934 1.70035 1.06093 1.41796 1.36443 0.85404 0.78389 0.78812 0.78446 1.19188 1.19001 1.18288 0.92756 0.90497 0.88044 0.92449 0.91953 0.90003 0.90911 0.91333 0.90767 0.85098 0.84474 0.84513 0.84754 0.85613 0.71393 0.90419 0.89576 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.85 71.98 0.64 -1.44 16 2 C -0.10 -1.98 2.72 -11.54 -0.03 -2.01 16 3 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.11 -2.13 4.03 30.59 0.12 -2.01 16 5 C -0.10 -1.43 4.95 30.59 0.15 -1.27 16 6 C -0.08 -1.29 5.35 29.85 0.16 -1.13 16 7 C -0.09 -1.39 5.13 -19.87 -0.10 -1.50 16 8 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 9 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 10 C -0.14 -1.78 10.05 22.27 0.22 -1.56 16 11 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 12 C -0.13 -2.10 9.70 22.27 0.22 -1.88 16 13 C 0.53 16.51 6.89 87.66 0.60 17.12 16 14 O -0.53 -22.31 14.01 13.26 0.19 -22.12 16 15 N -1.04 -31.75 5.50 -173.53 -0.95 -32.70 16 16 S 2.60 113.07 5.03 -56.49 -0.28 112.79 16 17 O -0.98 -44.21 18.08 -127.65 -2.31 -46.52 16 18 O -0.99 -49.93 17.05 -120.74 -2.06 -51.99 16 19 C -0.42 -21.64 5.64 71.24 0.40 -21.23 16 20 C -0.57 -32.85 9.13 25.60 0.23 -32.62 16 21 H 0.07 3.79 7.71 -2.91 -0.02 3.77 16 22 C 0.02 1.36 5.46 84.66 0.46 1.82 16 23 N -0.91 -52.87 13.29 21.45 0.28 -52.59 16 24 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.86 7.56 -2.39 -0.02 0.84 16 30 H 0.10 0.89 6.56 -2.39 -0.02 0.87 16 31 H 0.06 1.38 7.95 -2.39 -0.02 1.36 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 0.94 6.57 -2.38 -0.02 0.93 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 36 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 37 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.13 1.77 8.06 -2.91 -0.02 1.74 16 42 H 0.45 9.07 8.21 -96.74 -0.79 8.28 16 43 H 0.08 4.26 7.18 -2.40 -0.02 4.24 16 44 H 0.09 4.26 8.14 -2.39 -0.02 4.24 16 45 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -80.05 388.72 0.83 -79.22 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.20 Total: 20.76 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 3.74 Total: -52.41 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -0.67 Total: -85.29 kcal Atomic # 8 Polarization: -116.44 SS G_CDS: -4.18 Total: -120.62 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 113.07 SS G_CDS: -0.28 Total: 112.79 kcal Total: -80.05 0.83 -79.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.754 kcal (2) G-P(sol) polarization free energy of solvation -80.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds