Wall clock time and date at job start Tue Mar 31 2020 22:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 H 1.09000 * 109.47171 * 54.76184 * 3 2 1 5 5 C 1.52999 * 109.47344 * 174.76176 * 3 2 1 6 6 C 1.50696 * 109.47145 * 293.99322 * 5 3 2 7 7 O 1.21285 * 120.00076 * 353.87096 * 6 5 3 8 8 N 1.34777 * 119.99956 * 173.87086 * 6 5 3 9 9 S 1.65599 * 120.00040 * 179.97438 * 8 6 5 10 10 O 1.42105 * 104.27979 * 181.07011 * 9 8 6 11 11 O 1.42096 * 104.27861 * 308.93099 * 9 8 6 12 12 C 1.81408 * 104.44644 * 65.00014 * 9 8 6 13 13 C 1.50700 * 109.46915 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00477 * 0.02562 * 13 12 9 15 15 C 1.37876 * 119.99998 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99968 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00003 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47112 * 60.00085 * 17 15 13 19 19 H 1.48505 * 109.47026 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47331 * 299.99891 * 17 15 13 21 21 C 1.50707 * 109.46947 * 294.76391 * 3 2 1 22 22 C 1.38237 * 119.99639 * 299.72423 * 21 3 2 23 23 C 1.38236 * 119.99454 * 179.76775 * 22 21 3 24 24 C 1.38232 * 120.00280 * 0.50748 * 23 22 21 25 25 C 1.50694 * 120.00343 * 179.72396 * 24 23 22 26 26 C 1.38239 * 119.99920 * 359.74618 * 24 23 22 27 27 C 1.38229 * 119.99834 * 119.99933 * 21 3 2 28 28 H 1.09007 * 109.47342 * 175.25268 * 1 2 3 29 29 H 1.09000 * 109.47562 * 295.25367 * 1 2 3 30 30 H 1.09005 * 109.46924 * 55.25561 * 1 2 3 31 31 H 1.09002 * 109.46897 * 119.99385 * 2 1 3 32 32 H 1.08994 * 109.47102 * 239.99401 * 2 1 3 33 33 H 1.09007 * 109.46630 * 53.99236 * 5 3 2 34 34 H 1.08999 * 109.47342 * 173.98815 * 5 3 2 35 35 H 0.96999 * 119.99982 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.46941 * 300.00087 * 12 9 8 37 37 H 1.09004 * 109.46900 * 60.00678 * 12 9 8 38 38 H 0.97004 * 119.99775 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.00283 * 0.02562 * 22 21 3 40 40 H 1.08002 * 120.00025 * 180.23344 * 23 22 21 41 41 H 1.08996 * 109.47474 * 270.02586 * 25 24 23 42 42 H 1.09007 * 109.46764 * 30.02641 * 25 24 23 43 43 H 1.09002 * 109.47694 * 150.02270 * 25 24 23 44 44 H 1.07998 * 120.00204 * 179.97438 * 26 24 23 45 45 H 1.07996 * 120.00326 * 0.02562 * 27 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6020 1.9827 0.8394 5 6 3.5643 1.4446 0.1317 6 6 3.9523 0.9073 1.4851 7 8 3.0961 0.6617 2.3083 8 7 5.2507 0.6997 1.7808 9 16 5.6772 0.1098 3.2682 10 8 7.0962 0.0472 3.2268 11 8 5.0080 0.9615 4.1880 12 6 4.9674 -1.5590 3.3138 13 6 5.2925 -2.2072 4.6349 14 1 5.8681 -1.6689 5.3734 15 6 4.8551 -3.4874 4.9008 16 7 4.1546 -4.1431 4.0013 17 14 5.2574 -4.2905 6.5387 18 1 4.6838 -3.4790 7.6421 19 1 4.6765 -5.6567 6.5759 20 1 6.7313 -4.3742 6.7002 21 6 1.6462 2.1144 -1.2902 22 6 2.0911 1.6079 -2.4971 23 6 1.7260 2.2215 -3.6808 24 6 0.9248 3.3476 -3.6571 25 6 0.5319 4.0201 -4.9472 26 6 0.4842 3.8572 -2.4500 27 6 0.8450 3.2406 -1.2665 28 1 -0.3634 -1.0242 -0.0851 29 1 -0.3634 0.4384 0.9294 30 1 -0.3633 0.5857 -0.8445 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.9970 0.8158 -0.6466 34 1 3.9368 2.4633 0.0247 35 1 5.9354 0.8957 1.1223 36 1 3.8857 -1.4971 3.1954 37 1 5.3882 -2.1550 2.5039 38 1 3.8472 -5.0439 4.1883 39 1 2.7204 0.7304 -2.5154 40 1 2.0704 1.8235 -4.6239 41 1 1.2740 4.7761 -5.2036 42 1 0.4801 3.2771 -5.7431 43 1 -0.4427 4.4935 -4.8281 44 1 -0.1414 4.7373 -2.4314 45 1 0.5015 3.6392 -0.3234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:12 Heat of formation + Delta-G solvation = -116.129565 kcal Electronic energy + Delta-G solvation = -27255.906066 eV Core-core repulsion = 23364.420645 eV Total energy + Delta-G solvation = -3891.485422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.38915 -39.40429 -36.31961 -36.01713 -35.16285 -34.10318 -33.35333 -32.18192 -31.10222 -30.51557 -29.05496 -27.27820 -24.49010 -23.52775 -23.06865 -22.03281 -21.32256 -19.84250 -19.11980 -17.70977 -17.25357 -16.45944 -16.17530 -15.86731 -15.56530 -15.18243 -15.03127 -14.64571 -14.50415 -14.39054 -14.22530 -13.88275 -13.56952 -13.51058 -13.18095 -12.67165 -12.53694 -12.48663 -12.16763 -12.12746 -11.97096 -11.78659 -11.47522 -11.43516 -11.29510 -11.20722 -11.19326 -10.98481 -10.89007 -10.75990 -10.62973 -10.60210 -10.35687 -9.94868 -9.76170 -9.16150 -9.07860 -8.70383 -8.63154 -6.33316 -4.44373 1.03173 1.17212 1.24636 2.40809 3.18975 3.24354 3.26820 3.31501 3.57482 4.20735 4.31409 4.51358 4.58303 4.66556 4.73977 4.84185 4.87971 4.94775 5.00193 5.09958 5.19442 5.23177 5.29473 5.30759 5.31140 5.38376 5.47065 5.52455 5.54535 5.69905 5.80501 5.88438 5.96586 5.97400 6.19105 6.23427 6.33000 6.41328 6.45391 6.57048 6.58345 6.75826 6.85416 7.01542 7.41370 7.73054 7.80331 8.56425 9.22916 10.78363 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002643 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.517425 B =10592.140054 C =11338.916004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.039 4.039 4 H 0.093 0.907 5 C -0.136 4.136 6 C 0.531 3.469 7 O -0.484 6.484 8 N -1.062 6.062 9 S 2.553 3.447 10 O -0.971 6.971 11 O -0.953 6.953 12 C -0.403 4.403 13 C -0.535 4.535 14 H 0.070 0.930 15 C 0.078 3.922 16 N -0.877 5.877 17 Si 0.906 3.094 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.072 4.072 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.096 4.096 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.111 4.111 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.424 0.576 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.269 0.731 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 12.710 -18.606 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.057 4.057 4 H 0.111 0.889 5 C -0.178 4.178 6 C 0.317 3.683 7 O -0.355 6.355 8 N -0.822 5.822 9 S 2.656 3.344 10 O -0.961 6.961 11 O -0.944 6.944 12 C -0.540 4.540 13 C -0.575 4.575 14 H 0.088 0.912 15 C -0.129 4.129 16 N -0.513 5.513 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.096 4.096 25 C -0.170 4.170 26 C -0.137 4.137 27 C -0.129 4.129 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.258 0.742 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.576 12.911 -17.423 22.660 hybrid contribution 0.294 -0.802 0.030 0.855 sum -6.281 12.109 -17.393 22.104 Atomic orbital electron populations 1.21709 0.95643 1.01472 1.01600 1.21711 0.96557 0.94677 1.03126 1.20064 0.93069 0.97562 0.95049 0.88919 1.21889 0.97774 1.03583 0.94552 1.20541 0.81349 0.76073 0.90289 1.90902 1.48211 1.47163 1.49194 1.55506 1.14805 1.73972 1.37875 1.07112 0.74813 0.80247 0.72270 1.93519 1.29276 1.88666 1.84688 1.93527 1.75750 1.65524 1.59569 1.27588 1.08943 1.11105 1.06321 1.20241 1.37962 1.00981 0.98284 0.91234 1.24910 0.93759 0.96465 0.97743 1.69945 1.34501 1.12415 1.34410 0.86412 0.79266 0.78380 0.82785 1.19369 1.20677 1.19416 1.19817 0.97400 0.95367 0.94611 1.21019 1.00129 0.99890 0.91847 1.20999 0.98665 0.95944 0.98095 1.19898 0.98237 0.96203 0.95226 1.20776 1.01479 1.00327 0.94436 1.21003 1.00694 1.00048 0.92001 1.21099 0.98088 0.95470 0.98225 0.92844 0.92585 0.93084 0.89714 0.92161 0.88070 0.87920 0.74198 0.88361 0.89774 0.92111 0.85945 0.86288 0.91346 0.91691 0.91719 0.86313 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.80 37.16 0.36 -1.36 16 2 C -0.12 -1.52 5.11 -26.73 -0.14 -1.66 16 3 C -0.04 -0.43 1.68 -91.77 -0.15 -0.59 16 4 H 0.09 1.15 7.56 -51.93 -0.39 0.75 16 5 C -0.14 -1.44 4.89 -27.89 -0.14 -1.58 16 6 C 0.53 8.17 7.12 -10.99 -0.08 8.09 16 7 O -0.48 -9.42 12.41 -11.57 -0.14 -9.57 16 8 N -1.06 -16.26 5.60 31.22 0.17 -16.09 16 9 S 2.55 54.51 5.03 -107.50 -0.54 53.97 16 10 O -0.97 -22.04 18.08 -57.54 -1.04 -23.08 16 11 O -0.95 -23.53 17.04 -64.79 -1.10 -24.64 16 12 C -0.40 -9.88 5.64 36.01 0.20 -9.67 16 13 C -0.54 -14.93 9.13 -34.44 -0.31 -15.25 16 14 H 0.07 1.90 7.71 -52.49 -0.40 1.49 16 15 C 0.08 2.16 5.46 -17.82 -0.10 2.07 16 16 N -0.88 -24.91 13.29 55.43 0.74 -24.17 16 17 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.07 -0.71 3.70 -104.62 -0.39 -1.10 16 22 C -0.11 -1.01 8.71 -39.58 -0.34 -1.36 16 23 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 24 C -0.10 -0.80 5.88 -104.63 -0.62 -1.42 16 25 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 26 C -0.12 -1.04 9.70 -39.58 -0.38 -1.43 16 27 C -0.11 -1.06 9.67 -39.58 -0.38 -1.44 16 28 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.56 7.24 -51.93 -0.38 0.18 16 31 H 0.08 1.29 6.19 -51.93 -0.32 0.97 16 32 H 0.06 0.66 7.23 -51.93 -0.38 0.28 16 33 H 0.10 0.82 7.59 -51.93 -0.39 0.43 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.42 4.61 8.79 -34.47 -0.30 4.31 16 36 H 0.10 2.51 7.19 -51.93 -0.37 2.14 16 37 H 0.08 1.99 8.14 -51.92 -0.42 1.56 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 39 H 0.12 0.97 7.15 -52.49 -0.38 0.60 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.35 8.09 -51.92 -0.42 -0.07 16 43 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 1.07 7.95 -52.49 -0.42 0.65 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -35.58 384.42 -10.30 -45.88 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.67 Total: 4.20 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -2.49 Total: -28.41 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.91 Total: -40.26 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -2.29 Total: -57.28 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 54.51 SS G_CDS: -0.54 Total: 53.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.58 -10.30 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.250 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds