Wall clock time and date at job start Tue Mar 31 2020 22:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 H 1.09000 * 109.47171 * 54.76184 * 3 2 1 5 5 C 1.52999 * 109.47344 * 174.76176 * 3 2 1 6 6 C 1.50696 * 109.47145 * 293.99322 * 5 3 2 7 7 O 1.21285 * 120.00076 * 353.87096 * 6 5 3 8 8 N 1.34777 * 119.99956 * 173.87086 * 6 5 3 9 9 S 1.65599 * 120.00040 * 179.97438 * 8 6 5 10 10 O 1.42105 * 104.27979 * 181.07011 * 9 8 6 11 11 O 1.42096 * 104.27861 * 308.93099 * 9 8 6 12 12 C 1.81408 * 104.44644 * 65.00014 * 9 8 6 13 13 C 1.50700 * 109.46915 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00477 * 0.02562 * 13 12 9 15 15 C 1.37876 * 119.99998 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99968 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00003 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47112 * 60.00085 * 17 15 13 19 19 H 1.48505 * 109.47026 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47331 * 299.99891 * 17 15 13 21 21 C 1.50707 * 109.46947 * 294.76391 * 3 2 1 22 22 C 1.38237 * 119.99639 * 299.72423 * 21 3 2 23 23 C 1.38236 * 119.99454 * 179.76775 * 22 21 3 24 24 C 1.38232 * 120.00280 * 0.50748 * 23 22 21 25 25 C 1.50694 * 120.00343 * 179.72396 * 24 23 22 26 26 C 1.38239 * 119.99920 * 359.74618 * 24 23 22 27 27 C 1.38229 * 119.99834 * 119.99933 * 21 3 2 28 28 H 1.09007 * 109.47342 * 175.25268 * 1 2 3 29 29 H 1.09000 * 109.47562 * 295.25367 * 1 2 3 30 30 H 1.09005 * 109.46924 * 55.25561 * 1 2 3 31 31 H 1.09002 * 109.46897 * 119.99385 * 2 1 3 32 32 H 1.08994 * 109.47102 * 239.99401 * 2 1 3 33 33 H 1.09007 * 109.46630 * 53.99236 * 5 3 2 34 34 H 1.08999 * 109.47342 * 173.98815 * 5 3 2 35 35 H 0.96999 * 119.99982 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.46941 * 300.00087 * 12 9 8 37 37 H 1.09004 * 109.46900 * 60.00678 * 12 9 8 38 38 H 0.97004 * 119.99775 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.00283 * 0.02562 * 22 21 3 40 40 H 1.08002 * 120.00025 * 180.23344 * 23 22 21 41 41 H 1.08996 * 109.47474 * 270.02586 * 25 24 23 42 42 H 1.09007 * 109.46764 * 30.02641 * 25 24 23 43 43 H 1.09002 * 109.47694 * 150.02270 * 25 24 23 44 44 H 1.07998 * 120.00204 * 179.97438 * 26 24 23 45 45 H 1.07996 * 120.00326 * 0.02562 * 27 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6020 1.9827 0.8394 5 6 3.5643 1.4446 0.1317 6 6 3.9523 0.9073 1.4851 7 8 3.0961 0.6617 2.3083 8 7 5.2507 0.6997 1.7808 9 16 5.6772 0.1098 3.2682 10 8 7.0962 0.0472 3.2268 11 8 5.0080 0.9615 4.1880 12 6 4.9674 -1.5590 3.3138 13 6 5.2925 -2.2072 4.6349 14 1 5.8681 -1.6689 5.3734 15 6 4.8551 -3.4874 4.9008 16 7 4.1546 -4.1431 4.0013 17 14 5.2574 -4.2905 6.5387 18 1 4.6838 -3.4790 7.6421 19 1 4.6765 -5.6567 6.5759 20 1 6.7313 -4.3742 6.7002 21 6 1.6462 2.1144 -1.2902 22 6 2.0911 1.6079 -2.4971 23 6 1.7260 2.2215 -3.6808 24 6 0.9248 3.3476 -3.6571 25 6 0.5319 4.0201 -4.9472 26 6 0.4842 3.8572 -2.4500 27 6 0.8450 3.2406 -1.2665 28 1 -0.3634 -1.0242 -0.0851 29 1 -0.3634 0.4384 0.9294 30 1 -0.3633 0.5857 -0.8445 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.9970 0.8158 -0.6466 34 1 3.9368 2.4633 0.0247 35 1 5.9354 0.8957 1.1223 36 1 3.8857 -1.4971 3.1954 37 1 5.3882 -2.1550 2.5039 38 1 3.8472 -5.0439 4.1883 39 1 2.7204 0.7304 -2.5154 40 1 2.0704 1.8235 -4.6239 41 1 1.2740 4.7761 -5.2036 42 1 0.4801 3.2771 -5.7431 43 1 -0.4427 4.4935 -4.8281 44 1 -0.1414 4.7373 -2.4314 45 1 0.5015 3.6392 -0.3234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835411704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:11 Heat of formation + Delta-G solvation = -139.629788 kcal Electronic energy + Delta-G solvation = -27256.925112 eV Core-core repulsion = 23364.420645 eV Total energy + Delta-G solvation = -3892.504468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.49045 -40.29409 -38.09698 -37.05748 -36.92089 -35.55801 -35.39682 -32.86829 -31.76245 -31.45933 -31.07973 -27.97715 -25.68552 -25.31654 -23.74034 -23.00055 -22.33131 -20.89265 -20.51117 -19.27960 -18.73846 -18.31618 -17.52287 -17.09651 -16.61514 -16.37617 -16.26678 -16.07316 -15.76374 -15.59501 -15.26915 -14.56721 -14.51903 -14.41925 -14.24130 -14.14850 -14.01505 -13.71598 -13.49841 -13.32933 -13.19001 -13.08525 -13.00537 -12.77853 -12.74279 -12.70793 -12.55751 -12.23691 -12.03442 -11.92061 -11.87493 -11.80384 -11.59305 -11.42408 -11.17563 -10.96830 -10.78921 -9.73106 -9.30023 -8.43110 -6.61935 -0.71372 0.49154 0.59373 1.14712 1.36395 1.40433 1.48270 1.66880 2.29321 2.78034 2.90364 2.91188 3.18624 3.43186 3.68414 3.91595 3.98995 4.11503 4.15019 4.20587 4.25349 4.35311 4.50392 4.52986 4.59422 4.66674 4.69703 4.76318 4.78791 4.88880 4.89365 4.96777 5.02686 5.05614 5.22112 5.27966 5.28441 5.33958 5.38793 5.43838 5.62708 5.68026 5.79830 5.80224 5.84333 6.21345 6.46963 6.58057 7.09498 8.69409 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002643 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.517425 B =10592.140054 C =11338.916004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.033 4.033 4 H 0.074 0.926 5 C -0.127 4.127 6 C 0.527 3.473 7 O -0.527 6.527 8 N -1.043 6.043 9 S 2.598 3.402 10 O -0.982 6.982 11 O -0.987 6.987 12 C -0.419 4.419 13 C -0.569 4.569 14 H 0.066 0.934 15 C 0.026 3.974 16 N -0.906 5.906 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.258 1.258 21 C -0.079 4.079 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.100 4.100 25 C -0.113 4.113 26 C -0.128 4.128 27 C -0.123 4.123 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.448 0.552 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.274 0.726 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.132 0.868 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 13.525 -20.665 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.053 4.053 4 H 0.092 0.908 5 C -0.168 4.168 6 C 0.316 3.684 7 O -0.401 6.401 8 N -0.809 5.809 9 S 2.698 3.302 10 O -0.973 6.973 11 O -0.978 6.978 12 C -0.554 4.554 13 C -0.608 4.608 14 H 0.084 0.916 15 C -0.178 4.178 16 N -0.543 5.543 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.182 1.182 21 C -0.079 4.079 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.100 4.100 25 C -0.170 4.170 26 C -0.146 4.146 27 C -0.141 4.141 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.287 0.713 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.150 0.850 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.998 13.715 -19.500 24.583 hybrid contribution 0.065 -0.982 0.547 1.126 sum -5.932 12.733 -18.953 23.591 Atomic orbital electron populations 1.21668 0.95474 1.01493 1.01413 1.21690 0.96822 0.95529 1.02134 1.19940 0.93351 0.96537 0.95432 0.90800 1.22024 0.97538 1.05520 0.91701 1.21536 0.80351 0.74880 0.91658 1.90901 1.49274 1.48988 1.50915 1.54944 1.15973 1.73274 1.36744 1.05427 0.73645 0.78179 0.72925 1.93494 1.29776 1.88438 1.85567 1.93483 1.76499 1.65598 1.62177 1.27638 1.08138 1.14441 1.05165 1.20691 1.38416 1.01899 0.99774 0.91560 1.25847 0.93449 0.97061 1.01403 1.70028 1.35143 1.12882 1.36200 0.85505 0.79694 0.77848 0.78313 1.19055 1.19288 1.18217 1.19637 0.98463 0.95788 0.94045 1.21190 1.00212 1.00263 0.91620 1.21271 0.98459 0.95899 0.98674 1.20238 0.97642 0.96154 0.96012 1.20819 1.02014 1.00642 0.93482 1.21220 1.00904 1.00548 0.91888 1.21220 0.98382 0.95748 0.98759 0.92916 0.93796 0.91964 0.93186 0.90480 0.84643 0.84978 0.71299 0.90266 0.89588 0.91674 0.84676 0.84498 0.90535 0.90842 0.91100 0.84974 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.80 71.98 0.71 -2.70 16 2 C -0.12 -3.07 5.11 30.59 0.16 -2.91 16 3 C -0.03 -0.72 1.68 -11.54 -0.02 -0.74 16 4 H 0.07 1.87 7.56 -2.39 -0.02 1.85 16 5 C -0.13 -2.40 4.89 29.85 0.15 -2.25 16 6 C 0.53 15.90 7.12 87.66 0.62 16.52 16 7 O -0.53 -21.20 12.41 13.33 0.17 -21.04 16 8 N -1.04 -30.82 5.60 -173.53 -0.97 -31.79 16 9 S 2.60 111.57 5.03 -56.49 -0.28 111.29 16 10 O -0.98 -44.00 18.08 -127.65 -2.31 -46.31 16 11 O -0.99 -49.51 17.04 -120.72 -2.06 -51.57 16 12 C -0.42 -21.23 5.64 71.24 0.40 -20.83 16 13 C -0.57 -32.54 9.13 25.60 0.23 -32.31 16 14 H 0.07 3.70 7.71 -2.91 -0.02 3.68 16 15 C 0.03 1.46 5.46 84.65 0.46 1.93 16 16 N -0.91 -52.48 13.29 21.45 0.28 -52.20 16 17 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 C -0.08 -1.44 3.70 -19.86 -0.07 -1.51 16 22 C -0.12 -1.79 8.71 22.27 0.19 -1.59 16 23 C -0.13 -1.78 9.70 22.27 0.22 -1.56 16 24 C -0.10 -1.44 5.88 -19.87 -0.12 -1.55 16 25 C -0.11 -1.06 10.01 71.23 0.71 -0.35 16 26 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 27 C -0.12 -2.20 9.67 22.27 0.22 -1.99 16 28 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.32 7.24 -2.38 -0.02 1.31 16 31 H 0.05 1.59 6.19 -2.39 -0.01 1.58 16 32 H 0.08 1.59 7.23 -2.39 -0.02 1.58 16 33 H 0.14 1.69 7.59 -2.38 -0.02 1.67 16 34 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.45 8.63 8.79 -96.75 -0.85 7.78 16 36 H 0.08 4.27 7.19 -2.39 -0.02 4.25 16 37 H 0.09 4.20 8.14 -2.39 -0.02 4.18 16 38 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.14 1.69 7.15 -2.91 -0.02 1.67 16 40 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.57 8.09 -2.38 -0.02 0.55 16 43 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 44 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 45 H 0.12 2.09 7.95 -2.91 -0.02 2.06 16 Total: -1.00 -78.62 384.42 1.08 -77.54 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.15 Total: 22.30 kcal Atomic # 6 Polarization: -57.69 SS G_CDS: 4.07 Total: -53.62 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -0.69 Total: -83.99 kcal Atomic # 8 Polarization: -114.71 SS G_CDS: -4.20 Total: -118.91 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 111.57 SS G_CDS: -0.28 Total: 111.29 kcal Total: -78.62 1.08 -77.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.090 kcal (2) G-P(sol) polarization free energy of solvation -78.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds