Wall clock time and date at job start Tue Mar 31 2020 22:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.46819 * 2 1 4 4 C 1.34225 * 116.99662 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00232 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.99738 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46726 * 60.00234 * 6 4 3 8 8 C 1.52999 * 109.47071 * 300.00212 * 6 4 3 9 9 C 1.53007 * 109.47249 * 64.99777 * 8 6 4 10 10 C 1.50701 * 109.46947 * 180.02562 * 6 4 3 11 11 O 1.21291 * 119.99784 * 359.97438 * 10 6 4 12 12 N 1.34775 * 119.99546 * 180.02562 * 10 6 4 13 13 C 1.40086 * 119.99815 * 174.44574 * 12 10 6 14 14 C 1.38712 * 120.07678 * 335.19314 * 13 12 10 15 15 C 1.38191 * 120.02319 * 179.69780 * 14 13 12 16 16 C 1.38555 * 120.17116 * 0.60166 * 15 14 13 17 17 F 1.35099 * 119.91709 * 179.69938 * 16 15 14 18 18 C 1.38342 * 120.15669 * 359.67899 * 16 15 14 19 19 C 1.38737 * 119.97617 * 0.02562 * 18 16 15 20 20 O 1.35771 * 120.08893 * 179.97438 * 19 18 16 21 21 C 1.34803 * 116.99759 * 5.17059 * 20 19 18 22 22 H 1.07999 * 120.00468 * 354.98044 * 21 20 19 23 23 C 1.38644 * 120.00008 * 174.97502 * 21 20 19 24 24 N 1.31570 * 120.00059 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99849 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47223 * 90.00669 * 25 23 21 27 27 H 1.48508 * 109.47282 * 210.00196 * 25 23 21 28 28 H 1.48497 * 109.47735 * 330.00337 * 25 23 21 29 29 H 1.08998 * 109.47013 * 299.99760 * 1 2 3 30 30 H 1.08993 * 109.47452 * 60.00182 * 1 2 3 31 31 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47013 * 240.00240 * 2 1 3 33 33 H 1.09001 * 109.46869 * 119.99599 * 2 1 3 34 34 H 1.09001 * 109.46867 * 305.00081 * 8 6 4 35 35 H 1.08997 * 109.46851 * 184.99670 * 8 6 4 36 36 H 1.09001 * 109.46481 * 60.00072 * 9 8 6 37 37 H 1.08997 * 109.47107 * 299.99736 * 9 8 6 38 38 H 1.09002 * 109.46765 * 179.97438 * 9 8 6 39 39 H 0.97001 * 120.00450 * 354.44129 * 12 10 6 40 40 H 1.07999 * 119.98581 * 359.97438 * 14 13 12 41 41 H 1.07995 * 119.91104 * 180.30015 * 15 14 13 42 42 H 1.07994 * 120.00941 * 180.02562 * 18 16 15 43 43 H 0.97001 * 120.00073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9376 -0.0012 7 1 3.5850 3.4699 0.8888 8 6 3.4485 3.6841 -1.2504 9 6 1.9315 3.8735 -1.1886 10 6 5.4256 2.8587 -0.0023 11 8 5.9762 1.7780 -0.0021 12 7 6.1595 3.9891 -0.0025 13 6 7.5538 3.9189 0.1139 14 6 8.1461 2.8238 0.7253 15 6 9.5219 2.7527 0.8339 16 6 10.3130 3.7795 0.3443 17 9 11.6572 3.7076 0.4587 18 6 9.7296 4.8778 -0.2616 19 6 8.3493 4.9528 -0.3795 20 8 7.7744 6.0299 -0.9734 21 6 8.6027 6.9406 -1.5226 22 1 9.6716 6.8372 -1.4076 23 6 8.0826 8.0102 -2.2352 24 7 6.7804 8.1365 -2.3749 25 14 9.2304 9.2725 -2.9956 26 1 9.5883 8.8496 -4.3734 27 1 8.5523 10.5928 -3.0436 28 1 10.4632 9.3788 -2.1745 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7067 3.1066 -2.1381 35 1 3.9347 4.6586 -1.2967 36 1 1.6734 4.4510 -0.3009 37 1 1.4453 2.8991 -1.1423 38 1 1.5953 4.4058 -2.0785 39 1 5.7224 4.8512 -0.0833 40 1 7.5320 2.0242 1.1126 41 1 9.9813 1.8970 1.3060 42 1 10.3485 5.6766 -0.6428 43 1 6.4165 8.8850 -2.8732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840396589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:59 Heat of formation + Delta-G solvation = -166.967215 kcal Electronic energy + Delta-G solvation = -29609.256797 eV Core-core repulsion = 25149.353714 eV Total energy + Delta-G solvation = -4459.903084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.25742 -41.02258 -39.88892 -38.60761 -36.66533 -36.19293 -35.02554 -33.97399 -32.43089 -31.78656 -29.59083 -29.07420 -27.78852 -25.54120 -24.13353 -22.78323 -22.36495 -21.91497 -21.12449 -19.77074 -18.39975 -17.98989 -17.87247 -17.04574 -16.79683 -16.46314 -16.01575 -15.32303 -15.25048 -14.95024 -14.80426 -14.32251 -14.19847 -14.16704 -13.91255 -13.68066 -13.53707 -13.32643 -13.22414 -12.99783 -12.74581 -12.31796 -12.22728 -12.13843 -11.93165 -11.87069 -11.69616 -11.43996 -11.20491 -11.02719 -11.01048 -10.73691 -10.55466 -10.52981 -10.27439 -9.83044 -9.75436 -9.19244 -8.97873 -7.90277 -7.10135 -6.63240 -4.20519 1.75712 2.09569 2.23233 2.36702 2.86169 3.05018 3.06875 3.10708 3.45462 3.82797 4.31988 4.38899 4.66118 4.69519 4.73229 4.78705 4.82143 4.94764 4.98062 5.06147 5.10104 5.29157 5.35388 5.45284 5.53646 5.58662 5.67934 5.71283 5.73147 5.95968 6.00292 6.01802 6.17783 6.27291 6.40205 6.53273 6.70118 6.88543 6.93175 7.00997 7.16193 7.61853 7.77909 7.80602 7.83774 8.44778 8.83117 9.42845 10.53884 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003376 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.663384 B = 8291.961987 C =10617.255040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.354 6.354 4 C 0.466 3.534 5 O -0.461 6.461 6 C -0.100 4.100 7 H 0.134 0.866 8 C -0.116 4.116 9 C -0.159 4.159 10 C 0.510 3.490 11 O -0.493 6.493 12 N -0.644 5.644 13 C 0.065 3.935 14 C -0.061 4.061 15 C -0.225 4.225 16 C 0.127 3.873 17 F -0.151 7.151 18 C -0.257 4.257 19 C 0.156 3.844 20 O -0.170 6.170 21 C -0.392 4.392 22 H 0.094 0.906 23 C 0.044 3.956 24 N -0.859 5.859 25 Si 0.942 3.058 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.266 1.266 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.417 0.583 40 H 0.148 0.852 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 -8.025 4.284 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.272 6.272 4 C 0.305 3.695 5 O -0.344 6.344 6 C -0.122 4.122 7 H 0.152 0.848 8 C -0.154 4.154 9 C -0.216 4.216 10 C 0.295 3.705 11 O -0.366 6.366 12 N -0.289 5.289 13 C -0.030 4.030 14 C -0.081 4.081 15 C -0.245 4.245 16 C 0.107 3.893 17 F -0.130 7.130 18 C -0.277 4.277 19 C 0.101 3.899 20 O -0.073 6.073 21 C -0.468 4.468 22 H 0.112 0.888 23 C -0.161 4.161 24 N -0.493 5.493 25 Si 0.766 3.234 26 H -0.198 1.198 27 H -0.201 1.201 28 H -0.191 1.191 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.254 0.746 40 H 0.165 0.835 41 H 0.141 0.859 42 H 0.161 0.839 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.252 -8.899 4.149 14.934 hybrid contribution 0.757 1.009 -0.449 1.338 sum -10.495 -7.891 3.700 13.642 Atomic orbital electron populations 1.21798 0.92690 1.02843 1.03489 1.23011 0.95193 0.80657 1.02649 1.86549 1.24306 1.31820 1.84518 1.22861 0.80793 0.91678 0.74147 1.90815 1.59616 1.42033 1.41936 1.21112 0.93646 0.92908 1.04511 0.84847 1.21541 0.98127 1.01113 0.94574 1.21982 0.94155 1.03207 1.02258 1.19799 0.88076 0.84524 0.78142 1.90788 1.71859 1.27362 1.46610 1.43061 1.05075 1.09581 1.71196 1.16876 0.81677 0.96849 1.07565 1.20795 0.93878 0.97085 0.96378 1.20501 0.93439 1.00209 1.10356 1.17472 0.76157 0.95721 0.99907 1.91411 1.30691 1.96596 1.94312 1.20841 0.94926 1.01026 1.10953 1.18688 0.90077 0.88166 0.93007 1.83884 1.35009 1.26449 1.61988 1.21335 0.90108 1.02691 1.32626 0.88827 1.25264 0.96808 0.97748 0.96295 1.69995 1.10766 1.30382 1.38194 0.85688 0.79239 0.78962 0.79493 1.19763 1.20147 1.19068 0.91497 0.91457 0.90414 0.91278 0.91314 0.90757 0.88882 0.92215 0.90639 0.92050 0.74630 0.83498 0.85897 0.83905 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.35 -4.00 7.36 -39.25 -0.29 -4.29 16 4 C 0.47 6.57 7.23 36.01 0.26 6.83 16 5 O -0.46 -8.27 13.93 -26.86 -0.37 -8.65 16 6 C -0.10 -1.28 2.67 -92.92 -0.25 -1.53 16 7 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 8 C -0.12 -1.36 5.33 -26.73 -0.14 -1.51 16 9 C -0.16 -1.52 9.55 37.16 0.36 -1.17 16 10 C 0.51 8.69 6.95 -10.99 -0.08 8.61 16 11 O -0.49 -10.08 11.35 -18.97 -0.22 -10.29 16 12 N -0.64 -11.49 5.20 -9.72 -0.05 -11.54 16 13 C 0.06 1.33 6.45 -83.45 -0.54 0.79 16 14 C -0.06 -1.19 8.72 -39.42 -0.34 -1.54 16 15 C -0.22 -4.24 10.02 -39.48 -0.40 -4.64 16 16 C 0.13 2.55 7.29 -39.43 -0.29 2.27 16 17 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 18 C -0.26 -5.56 9.14 -39.36 -0.36 -5.92 16 19 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 20 O -0.17 -4.31 9.17 0.06 0.00 -4.31 16 21 C -0.39 -10.11 9.49 30.88 0.29 -9.82 16 22 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 23 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 24 N -0.86 -22.75 13.67 55.48 0.76 -22.00 16 25 Si 0.94 19.38 29.55 -169.99 -5.02 14.36 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 28 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.14 7.31 -51.93 -0.38 0.76 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.73 5.46 -51.93 -0.28 0.44 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.42 6.98 7.54 -40.82 -0.31 6.67 16 40 H 0.15 2.84 5.79 -52.49 -0.30 2.54 16 41 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.14 3.08 5.63 -52.49 -0.30 2.79 16 43 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -31.19 366.87 -6.06 -37.25 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.21 Total: 9.93 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.23 Total: -3.11 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.71 Total: -33.54 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.88 Total: -27.54 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.19 -6.06 -37.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840396589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.716 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds