Wall clock time and date at job start Tue Mar 31 2020 22:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.46819 * 2 1 4 4 C 1.34225 * 116.99662 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00232 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.99738 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46726 * 60.00234 * 6 4 3 8 8 C 1.52999 * 109.47071 * 300.00212 * 6 4 3 9 9 C 1.53007 * 109.47249 * 64.99777 * 8 6 4 10 10 C 1.50701 * 109.46947 * 180.02562 * 6 4 3 11 11 O 1.21291 * 119.99784 * 359.97438 * 10 6 4 12 12 N 1.34775 * 119.99546 * 180.02562 * 10 6 4 13 13 C 1.40086 * 119.99815 * 174.44574 * 12 10 6 14 14 C 1.38712 * 120.07678 * 335.19314 * 13 12 10 15 15 C 1.38191 * 120.02319 * 179.69780 * 14 13 12 16 16 C 1.38555 * 120.17116 * 0.60166 * 15 14 13 17 17 F 1.35099 * 119.91709 * 179.69938 * 16 15 14 18 18 C 1.38342 * 120.15669 * 359.67899 * 16 15 14 19 19 C 1.38737 * 119.97617 * 0.02562 * 18 16 15 20 20 O 1.35771 * 120.08893 * 179.97438 * 19 18 16 21 21 C 1.34803 * 116.99759 * 5.17059 * 20 19 18 22 22 H 1.07999 * 120.00468 * 354.98044 * 21 20 19 23 23 C 1.38644 * 120.00008 * 174.97502 * 21 20 19 24 24 N 1.31570 * 120.00059 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99849 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47223 * 90.00669 * 25 23 21 27 27 H 1.48508 * 109.47282 * 210.00196 * 25 23 21 28 28 H 1.48497 * 109.47735 * 330.00337 * 25 23 21 29 29 H 1.08998 * 109.47013 * 299.99760 * 1 2 3 30 30 H 1.08993 * 109.47452 * 60.00182 * 1 2 3 31 31 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47013 * 240.00240 * 2 1 3 33 33 H 1.09001 * 109.46869 * 119.99599 * 2 1 3 34 34 H 1.09001 * 109.46867 * 305.00081 * 8 6 4 35 35 H 1.08997 * 109.46851 * 184.99670 * 8 6 4 36 36 H 1.09001 * 109.46481 * 60.00072 * 9 8 6 37 37 H 1.08997 * 109.47107 * 299.99736 * 9 8 6 38 38 H 1.09002 * 109.46765 * 179.97438 * 9 8 6 39 39 H 0.97001 * 120.00450 * 354.44129 * 12 10 6 40 40 H 1.07999 * 119.98581 * 359.97438 * 14 13 12 41 41 H 1.07995 * 119.91104 * 180.30015 * 15 14 13 42 42 H 1.07994 * 120.00941 * 180.02562 * 18 16 15 43 43 H 0.97001 * 120.00073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9376 -0.0012 7 1 3.5850 3.4699 0.8888 8 6 3.4485 3.6841 -1.2504 9 6 1.9315 3.8735 -1.1886 10 6 5.4256 2.8587 -0.0023 11 8 5.9762 1.7780 -0.0021 12 7 6.1595 3.9891 -0.0025 13 6 7.5538 3.9189 0.1139 14 6 8.1461 2.8238 0.7253 15 6 9.5219 2.7527 0.8339 16 6 10.3130 3.7795 0.3443 17 9 11.6572 3.7076 0.4587 18 6 9.7296 4.8778 -0.2616 19 6 8.3493 4.9528 -0.3795 20 8 7.7744 6.0299 -0.9734 21 6 8.6027 6.9406 -1.5226 22 1 9.6716 6.8372 -1.4076 23 6 8.0826 8.0102 -2.2352 24 7 6.7804 8.1365 -2.3749 25 14 9.2304 9.2725 -2.9956 26 1 9.5883 8.8496 -4.3734 27 1 8.5523 10.5928 -3.0436 28 1 10.4632 9.3788 -2.1745 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7067 3.1066 -2.1381 35 1 3.9347 4.6586 -1.2967 36 1 1.6734 4.4510 -0.3009 37 1 1.4453 2.8991 -1.1423 38 1 1.5953 4.4058 -2.0785 39 1 5.7224 4.8512 -0.0833 40 1 7.5320 2.0242 1.1126 41 1 9.9813 1.8970 1.3060 42 1 10.3485 5.6766 -0.6428 43 1 6.4165 8.8850 -2.8732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840396589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:58 Heat of formation + Delta-G solvation = -184.088159 kcal Electronic energy + Delta-G solvation = -29609.999217 eV Core-core repulsion = 25149.353714 eV Total energy + Delta-G solvation = -4460.645503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.84561 -42.27525 -41.30407 -40.14729 -38.12101 -37.50931 -36.17345 -35.41475 -34.29435 -32.46812 -31.18291 -30.46007 -29.10210 -27.38832 -25.08409 -24.23449 -23.44570 -23.23455 -22.42771 -21.09383 -20.16871 -19.60089 -19.02486 -18.45234 -17.94074 -17.81968 -17.10700 -16.99595 -16.84280 -16.53422 -16.11880 -15.93111 -15.52822 -15.49638 -15.25517 -15.18526 -14.82492 -14.77552 -14.32063 -14.02863 -13.83794 -13.69176 -13.53617 -13.42061 -13.09890 -12.98540 -12.89883 -12.62854 -12.58450 -12.34363 -12.13292 -12.08588 -11.91765 -11.66293 -11.47461 -11.33492 -11.30258 -10.82842 -10.62440 -9.58158 -8.75161 -8.50078 -6.15187 0.13250 0.43095 1.11954 1.30436 1.39066 1.44701 1.47001 1.53208 2.12442 2.17971 2.65827 3.01616 3.16675 3.24530 3.43176 3.64087 3.69046 3.89894 3.98333 4.04842 4.12412 4.14641 4.33080 4.37434 4.39782 4.44988 4.59151 4.79846 4.84810 4.90734 4.97475 4.99974 5.11489 5.16506 5.20243 5.21660 5.28442 5.33455 5.43676 5.48906 5.53497 5.93872 6.00404 6.38014 6.71403 6.94628 7.03952 7.60873 8.70120 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003376 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.663384 B = 8291.961987 C =10617.255040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.342 6.342 4 C 0.471 3.529 5 O -0.505 6.505 6 C -0.091 4.091 7 H 0.171 0.829 8 C -0.112 4.112 9 C -0.152 4.152 10 C 0.510 3.490 11 O -0.526 6.526 12 N -0.643 5.643 13 C 0.066 3.934 14 C -0.064 4.064 15 C -0.204 4.204 16 C 0.121 3.879 17 F -0.145 7.145 18 C -0.262 4.262 19 C 0.133 3.867 20 O -0.199 6.199 21 C -0.417 4.417 22 H 0.098 0.902 23 C -0.005 4.005 24 N -0.899 5.899 25 Si 1.008 2.992 26 H -0.268 1.268 27 H -0.268 1.268 28 H -0.259 1.259 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.421 0.579 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.138 0.862 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 -8.302 4.867 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.260 6.260 4 C 0.312 3.688 5 O -0.391 6.391 6 C -0.113 4.113 7 H 0.188 0.812 8 C -0.150 4.150 9 C -0.209 4.209 10 C 0.297 3.703 11 O -0.402 6.402 12 N -0.288 5.288 13 C -0.029 4.029 14 C -0.085 4.085 15 C -0.223 4.223 16 C 0.101 3.899 17 F -0.123 7.123 18 C -0.283 4.283 19 C 0.079 3.921 20 O -0.104 6.104 21 C -0.492 4.492 22 H 0.115 0.885 23 C -0.205 4.205 24 N -0.536 5.536 25 Si 0.829 3.171 26 H -0.193 1.193 27 H -0.193 1.193 28 H -0.182 1.182 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.259 0.741 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.087 -9.190 4.752 15.911 hybrid contribution 0.994 0.861 -0.529 1.417 sum -11.093 -8.330 4.224 14.501 Atomic orbital electron populations 1.21811 0.89935 1.04304 1.03973 1.23310 0.97262 0.79483 1.02310 1.86555 1.22502 1.33183 1.83713 1.23001 0.81405 0.91429 0.72928 1.90804 1.60773 1.43348 1.44208 1.21139 0.90339 0.93112 1.06678 0.81188 1.21528 0.99929 1.00213 0.93288 1.21946 0.91935 1.03630 1.03394 1.20474 0.89737 0.83496 0.76573 1.90768 1.72975 1.28454 1.47972 1.43137 1.04229 1.10298 1.71114 1.17116 0.83001 0.96320 1.06462 1.20954 0.94369 0.96796 0.96345 1.20863 0.93045 1.00278 1.08147 1.17455 0.76600 0.95616 1.00189 1.91428 1.30109 1.96537 1.94259 1.20929 0.94757 1.01551 1.11024 1.19000 0.90867 0.88537 0.93707 1.83864 1.35441 1.27445 1.63653 1.21709 0.90601 1.03444 1.33480 0.88466 1.26300 0.98417 0.99364 0.96437 1.70091 1.12415 1.31468 1.39591 0.84716 0.77417 0.76462 0.78540 1.19328 1.19294 1.18245 0.90878 0.91050 0.88478 0.91918 0.91534 0.92266 0.89405 0.90589 0.90505 0.91458 0.74085 0.82898 0.82750 0.84422 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 10.29 71.98 0.74 -0.73 16 2 C 0.05 0.87 6.19 71.98 0.45 1.31 16 3 O -0.34 -7.22 7.36 -51.37 -0.38 -7.59 16 4 C 0.47 12.92 7.23 71.24 0.51 13.43 16 5 O -0.50 -18.19 13.93 29.72 0.41 -17.78 16 6 C -0.09 -2.25 2.67 -12.28 -0.03 -2.28 16 7 H 0.17 2.95 8.14 -2.39 -0.02 2.93 16 8 C -0.11 -2.54 5.33 30.60 0.16 -2.38 16 9 C -0.15 -2.60 9.55 71.98 0.69 -1.92 16 10 C 0.51 17.29 6.95 87.66 0.61 17.90 16 11 O -0.53 -21.59 11.35 20.37 0.23 -21.36 16 12 N -0.64 -23.06 5.20 -303.04 -1.58 -24.64 16 13 C 0.07 2.72 6.45 38.23 0.25 2.97 16 14 C -0.06 -2.46 8.72 22.37 0.19 -2.26 16 15 C -0.20 -7.30 10.02 22.33 0.22 -7.07 16 16 C 0.12 4.74 7.29 22.37 0.16 4.90 16 17 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 18 C -0.26 -11.44 9.14 22.41 0.20 -11.23 16 19 C 0.13 6.13 6.66 22.69 0.15 6.28 16 20 O -0.20 -10.42 9.17 -22.70 -0.21 -10.62 16 21 C -0.42 -22.08 9.49 67.92 0.64 -21.43 16 22 H 0.10 4.88 5.20 -2.91 -0.02 4.86 16 23 C 0.00 -0.25 5.49 84.83 0.47 0.22 16 24 N -0.90 -48.67 13.67 21.61 0.30 -48.38 16 25 Si 1.01 39.85 29.55 68.60 2.03 41.88 16 26 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 27 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 28 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.09 2.12 7.31 -2.39 -0.02 2.11 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.30 5.46 -2.39 -0.01 1.29 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.42 14.33 7.54 -92.71 -0.70 13.63 16 40 H 0.15 5.77 5.79 -2.91 -0.02 5.75 16 41 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 42 H 0.14 6.07 5.63 -2.91 -0.02 6.05 16 43 H 0.28 13.74 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -68.72 366.87 7.38 -61.34 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.37 Total: 33.98 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.42 Total: -2.28 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.28 Total: -73.01 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: 0.06 Total: -57.35 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -68.72 7.38 -61.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840396589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.749 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds