Wall clock time and date at job start Tue Mar 31 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45209 * 109.46715 * 2 1 4 4 C 1.34228 * 116.99706 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00375 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00069 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47132 * 300.00338 * 6 4 3 8 8 C 1.53002 * 109.47194 * 59.99967 * 6 4 3 9 9 C 1.52995 * 109.47121 * 185.49140 * 8 6 4 10 10 C 1.50698 * 109.47321 * 179.97438 * 6 4 3 11 11 O 1.21292 * 119.99998 * 338.89795 * 10 6 4 12 12 N 1.34782 * 119.99773 * 158.89149 * 10 6 4 13 13 C 1.40091 * 119.99635 * 185.72927 * 12 10 6 14 14 C 1.38708 * 120.07895 * 331.81881 * 13 12 10 15 15 C 1.38187 * 120.01907 * 179.72613 * 14 13 12 16 16 C 1.38549 * 120.17908 * 0.27579 * 15 14 13 17 17 F 1.35095 * 119.92289 * 179.97438 * 16 15 14 18 18 C 1.38347 * 120.15207 * 0.02562 * 16 15 14 19 19 C 1.38742 * 119.97708 * 359.97438 * 18 16 15 20 20 O 1.35774 * 120.08629 * 180.02562 * 19 18 16 21 21 C 1.34806 * 116.99833 * 355.26427 * 20 19 18 22 22 H 1.07994 * 120.00266 * 5.02980 * 21 20 19 23 23 C 1.38637 * 119.99828 * 185.03589 * 21 20 19 24 24 N 1.31573 * 120.00211 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00226 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47144 * 59.99750 * 25 23 21 27 27 H 1.48502 * 109.47416 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46956 * 299.99922 * 25 23 21 29 29 H 1.08994 * 109.47898 * 59.99634 * 1 2 3 30 30 H 1.09005 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47114 * 299.99260 * 1 2 3 32 32 H 1.09006 * 109.47114 * 240.00740 * 2 1 3 33 33 H 1.08994 * 109.47898 * 120.00366 * 2 1 3 34 34 H 1.09003 * 109.47144 * 305.49506 * 8 6 4 35 35 H 1.09003 * 109.46875 * 65.48895 * 8 6 4 36 36 H 1.08998 * 109.47457 * 62.00126 * 9 8 6 37 37 H 1.09006 * 109.46778 * 181.99597 * 9 8 6 38 38 H 1.08998 * 109.47129 * 301.99466 * 9 8 6 39 39 H 0.96994 * 120.00043 * 5.73715 * 12 10 6 40 40 H 1.08004 * 119.98643 * 0.02562 * 14 13 12 41 41 H 1.08002 * 119.90735 * 180.29924 * 15 14 13 42 42 H 1.07992 * 120.00975 * 179.97438 * 18 16 15 43 43 H 0.96993 * 120.00304 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9376 0.0000 7 1 3.5841 3.4703 -0.8895 8 6 3.4496 3.6838 1.2499 9 6 3.9205 5.1380 1.1834 10 6 5.4255 2.8588 -0.0001 11 8 5.9799 1.8482 0.3776 12 7 6.1553 3.9111 -0.4201 13 6 7.5470 3.7974 -0.5343 14 6 8.2409 2.9113 0.2763 15 6 9.6129 2.7960 0.1587 16 6 10.3002 3.5680 -0.7639 17 9 11.6416 3.4515 -0.8742 18 6 9.6161 4.4587 -1.5718 19 6 8.2385 4.5796 -1.4591 20 8 7.5648 5.4527 -2.2511 21 6 8.3024 6.2426 -3.0569 22 1 9.3725 6.1081 -3.1126 23 6 7.6873 7.2276 -3.8140 24 7 6.3835 7.3912 -3.7466 25 14 8.7093 8.3227 -4.9301 26 1 9.4140 7.4859 -5.9343 27 1 7.8205 9.2873 -5.6263 28 1 9.7061 9.0650 -4.1173 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.3611 3.6563 1.3010 35 1 3.8671 3.2068 2.1367 36 1 3.4747 5.6250 0.3162 37 1 3.6155 5.6604 2.0902 38 1 5.0067 5.1645 1.0967 39 1 5.7171 4.7472 -0.6431 40 1 7.7081 2.3077 0.9963 41 1 10.1509 2.1019 0.7874 42 1 10.1541 5.0597 -2.2898 43 1 5.9531 8.0801 -4.2765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840396590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:02 Heat of formation + Delta-G solvation = -183.877066 kcal Electronic energy + Delta-G solvation = -29672.063376 eV Core-core repulsion = 25211.427027 eV Total energy + Delta-G solvation = -4460.636350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.85034 -42.30215 -41.30977 -40.19415 -38.13559 -37.54727 -36.21051 -35.34297 -34.29990 -32.57536 -31.15275 -30.29022 -29.45397 -27.40213 -24.94356 -24.17356 -23.76137 -23.04868 -22.48425 -21.15433 -20.17521 -19.55535 -19.05184 -18.50934 -17.97530 -17.62667 -17.17935 -17.05384 -16.93271 -16.58517 -16.14529 -15.92223 -15.73019 -15.42847 -15.26727 -15.09157 -14.90109 -14.66501 -14.39668 -14.02244 -13.87744 -13.68025 -13.55119 -13.44203 -13.13824 -13.01687 -12.87612 -12.61944 -12.49458 -12.41287 -12.24305 -12.15955 -11.96206 -11.65641 -11.52952 -11.44077 -11.29626 -10.81790 -10.64622 -9.58321 -8.77773 -8.50165 -6.16066 0.14475 0.43645 1.07088 1.16873 1.38796 1.46468 1.51801 1.57572 2.12116 2.17812 2.64818 3.05184 3.12641 3.22657 3.42888 3.64029 3.66898 3.91880 3.98522 4.01865 4.09536 4.14773 4.32566 4.33700 4.36693 4.40376 4.58239 4.74564 4.84195 4.92600 4.94851 5.00166 5.04039 5.09659 5.14156 5.20291 5.29643 5.33613 5.37714 5.40926 5.48634 5.93561 6.01330 6.37372 6.65241 6.94015 7.02593 7.60435 8.69644 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.003429 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.812260 B = 8163.986128 C = 9946.664257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.350 6.350 4 C 0.473 3.527 5 O -0.509 6.509 6 C -0.098 4.098 7 H 0.153 0.847 8 C -0.098 4.098 9 C -0.166 4.166 10 C 0.516 3.484 11 O -0.528 6.528 12 N -0.642 5.642 13 C 0.061 3.939 14 C -0.063 4.063 15 C -0.206 4.206 16 C 0.123 3.877 17 F -0.145 7.145 18 C -0.264 4.264 19 C 0.133 3.867 20 O -0.199 6.199 21 C -0.419 4.419 22 H 0.098 0.902 23 C -0.004 4.004 24 N -0.900 5.900 25 Si 1.009 2.991 26 H -0.264 1.264 27 H -0.269 1.269 28 H -0.260 1.260 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.421 0.579 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.138 0.862 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 -6.081 8.567 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.314 3.686 5 O -0.396 6.396 6 C -0.119 4.119 7 H 0.171 0.829 8 C -0.135 4.135 9 C -0.223 4.223 10 C 0.303 3.697 11 O -0.403 6.403 12 N -0.288 5.288 13 C -0.034 4.034 14 C -0.083 4.083 15 C -0.226 4.226 16 C 0.103 3.897 17 F -0.123 7.123 18 C -0.285 4.285 19 C 0.079 3.921 20 O -0.104 6.104 21 C -0.494 4.494 22 H 0.115 0.885 23 C -0.205 4.205 24 N -0.536 5.536 25 Si 0.829 3.171 26 H -0.189 1.189 27 H -0.193 1.193 28 H -0.185 1.185 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.259 0.741 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.663 -6.951 8.690 15.412 hybrid contribution 0.880 0.656 -0.998 1.483 sum -9.784 -6.295 7.692 13.947 Atomic orbital electron populations 1.21819 0.89816 1.04436 1.03989 1.23338 0.97349 0.79006 1.02457 1.86466 1.22569 1.33835 1.83839 1.22998 0.81331 0.91518 0.72742 1.90788 1.60891 1.43463 1.44456 1.21178 0.90768 0.92874 1.07125 0.82949 1.21486 1.03961 0.95459 0.92618 1.22010 1.01111 0.94750 1.04473 1.20382 0.89554 0.82230 0.77551 1.90691 1.72589 1.31052 1.46010 1.43295 1.04607 1.15705 1.65172 1.17164 0.83451 1.03471 0.99354 1.21140 0.93048 0.96694 0.97442 1.20897 0.94250 1.04524 1.02914 1.17472 0.76635 0.97777 0.97848 1.91426 1.30285 1.95173 1.95444 1.20928 0.94153 1.06446 1.06923 1.19070 0.90607 0.92238 0.90165 1.83885 1.34801 1.44389 1.47309 1.21687 0.92737 1.13516 1.21477 0.88452 1.26312 0.97499 0.97810 0.98852 1.70086 1.09990 1.33199 1.40336 0.84775 0.77479 0.77347 0.77521 1.18865 1.19335 1.18491 0.91205 0.88227 0.90732 0.91843 0.91292 0.86574 0.91121 0.90753 0.89555 0.93822 0.74052 0.82374 0.82736 0.84423 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 10.29 71.98 0.74 -0.86 16 2 C 0.05 0.96 6.19 71.98 0.45 1.41 16 3 O -0.35 -7.94 10.02 -51.39 -0.51 -8.45 16 4 C 0.47 13.52 7.22 71.24 0.51 14.04 16 5 O -0.51 -18.88 14.17 29.55 0.42 -18.46 16 6 C -0.10 -2.49 2.64 -12.29 -0.03 -2.53 16 7 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 8 C -0.10 -1.84 5.35 30.59 0.16 -1.68 16 9 C -0.17 -3.15 9.24 71.98 0.67 -2.48 16 10 C 0.52 17.69 6.39 87.66 0.56 18.25 16 11 O -0.53 -21.46 11.57 19.88 0.23 -21.23 16 12 N -0.64 -23.35 4.29 -303.03 -1.30 -24.66 16 13 C 0.06 2.52 6.44 38.23 0.25 2.77 16 14 C -0.06 -2.42 8.78 22.37 0.20 -2.22 16 15 C -0.21 -7.42 10.02 22.33 0.22 -7.19 16 16 C 0.12 4.81 7.29 22.37 0.16 4.98 16 17 F -0.14 -5.36 17.26 44.97 0.78 -4.58 16 18 C -0.26 -11.60 9.14 22.42 0.20 -11.39 16 19 C 0.13 6.20 6.67 22.69 0.15 6.35 16 20 O -0.20 -10.51 9.21 -22.76 -0.21 -10.72 16 21 C -0.42 -22.27 9.49 67.92 0.64 -21.62 16 22 H 0.10 4.89 5.20 -2.91 -0.02 4.87 16 23 C 0.00 -0.22 5.49 84.83 0.47 0.24 16 24 N -0.90 -48.84 13.67 21.61 0.30 -48.54 16 25 Si 1.01 39.82 29.55 68.60 2.03 41.85 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 28 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 1.26 8.13 -2.38 -0.02 1.24 16 33 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 34 H 0.12 1.62 7.98 -2.39 -0.02 1.60 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.04 1.03 5.75 -2.39 -0.01 1.02 16 39 H 0.42 14.67 6.92 -92.71 -0.64 14.03 16 40 H 0.16 5.96 5.66 -2.91 -0.02 5.95 16 41 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.14 6.10 5.63 -2.91 -0.02 6.08 16 43 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -69.06 368.48 7.50 -61.56 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.43 Total: 35.18 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.35 Total: -1.94 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.01 Total: -73.20 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -0.08 Total: -58.87 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.78 Total: -4.58 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -69.06 7.50 -61.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840396590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.319 kcal (2) G-P(sol) polarization free energy of solvation -69.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds