Wall clock time and date at job start Tue Mar 31 2020 22:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47255 * 2 1 4 4 C 1.53000 * 109.47021 * 239.99952 * 2 1 3 5 5 S 1.81406 * 109.46931 * 120.00365 * 2 1 3 6 6 O 1.42096 * 108.57643 * 305.50936 * 5 2 1 7 7 O 1.42101 * 108.57726 * 174.48870 * 5 2 1 8 8 C 1.81400 * 101.92243 * 59.99861 * 5 2 1 9 9 C 1.52995 * 109.47132 * 180.02562 * 8 5 2 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 5 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.08996 * 109.47134 * 300.00188 * 1 2 3 28 28 H 1.09001 * 109.46863 * 59.99649 * 1 2 3 29 29 H 1.09004 * 109.47557 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46878 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47472 * 299.99978 * 3 2 1 32 32 H 1.08998 * 109.47075 * 60.00375 * 3 2 1 33 33 H 1.09002 * 109.47598 * 300.00271 * 4 2 1 34 34 H 1.09000 * 109.47299 * 60.00038 * 4 2 1 35 35 H 1.08998 * 109.47122 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.46800 * 59.99948 * 8 5 2 37 37 H 1.09005 * 109.47077 * 300.00131 * 8 5 2 38 38 H 1.09004 * 109.47250 * 59.99742 * 9 8 5 39 39 H 1.09005 * 109.47069 * 299.99918 * 9 8 5 40 40 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 42 42 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 43 43 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1346 -0.8553 1.4811 6 8 1.5479 -0.2496 2.6248 7 8 3.5496 -0.9573 1.3991 8 6 1.4228 -2.5109 1.2747 9 6 1.8330 -3.3933 2.4553 10 7 1.2577 -4.7302 2.2889 11 6 1.4875 -5.6827 3.2143 12 8 2.1721 -5.4322 4.1877 13 6 0.9090 -7.0284 3.0466 14 6 0.0683 -7.3021 1.9709 15 6 -0.4766 -8.5635 1.8207 16 6 -0.1904 -9.5717 2.7311 17 6 0.6414 -9.3331 3.8010 18 6 1.2083 -8.0574 3.9774 19 6 2.0608 -7.8025 5.0698 20 1 2.8891 -7.1183 4.9602 21 6 1.8336 -8.4376 6.2997 22 7 0.6622 -8.9528 6.5623 23 14 3.2061 -8.5465 7.5622 24 1 2.7139 -9.2596 8.7683 25 1 4.3544 -9.2882 6.9822 26 1 3.6409 -7.1778 7.9400 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7217 -1.2490 36 1 1.7893 -2.9508 0.3472 37 1 0.3359 -2.4371 1.2371 38 1 1.4662 -2.9531 3.3826 39 1 2.9199 -3.4672 2.4932 40 1 0.7114 -4.9299 1.5127 41 1 -0.1622 -6.5263 1.2557 42 1 -1.1313 -8.7669 0.9863 43 1 -0.6243 -10.5518 2.5986 44 1 0.8589 -10.1235 4.5040 45 1 -0.0716 -8.8315 5.9397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865826473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:45 Heat of formation + Delta-G solvation = -101.097362 kcal Electronic energy + Delta-G solvation = -27222.676228 eV Core-core repulsion = 23331.842652 eV Total energy + Delta-G solvation = -3890.833576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.11952 -37.26018 -37.16228 -37.03701 -36.25300 -34.93526 -33.92835 -31.27076 -29.77906 -29.24897 -27.95228 -27.89062 -25.36161 -23.87067 -22.28783 -21.74876 -20.90293 -19.77164 -18.67101 -18.14393 -17.21360 -16.74368 -16.39029 -16.03650 -15.31347 -15.25710 -14.79311 -14.67087 -14.54074 -14.12563 -14.04723 -13.75199 -13.71116 -13.43418 -12.93844 -12.90266 -12.65205 -12.49239 -12.42142 -12.29740 -12.19073 -12.16015 -11.97588 -11.74368 -11.70735 -11.57758 -11.19814 -11.12981 -10.93738 -10.78308 -10.45195 -10.35959 -10.20372 -9.64719 -9.09679 -8.60351 -8.52950 -7.83798 -7.64553 -7.17759 -4.49642 -0.36046 2.19042 2.41104 2.70642 3.21238 3.25001 3.31155 3.41785 3.61135 3.86600 3.99153 3.99650 4.04139 4.04798 4.28958 4.38599 4.55672 4.62008 4.93418 4.96878 5.01387 5.11877 5.14866 5.18212 5.23207 5.41074 5.50368 5.56513 5.58433 5.64743 5.66201 5.80576 6.00652 6.12349 6.44266 6.67406 6.90445 6.95930 7.23481 7.44599 7.56534 7.67884 7.84977 8.04368 8.17239 8.27930 8.69082 8.82465 9.26510 10.01524 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.002767 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.050794 B =10115.936288 C =11363.552610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.539 4.539 3 C -0.137 4.137 4 C -0.142 4.142 5 S 2.426 3.574 6 O -0.929 6.929 7 O -0.930 6.930 8 C -0.632 4.632 9 C 0.139 3.861 10 N -0.744 5.744 11 C 0.562 3.438 12 O -0.532 6.532 13 C -0.266 4.266 14 C -0.043 4.043 15 C -0.260 4.260 16 C -0.076 4.076 17 C -0.199 4.199 18 C 0.120 3.880 19 C -0.464 4.464 20 H 0.106 0.894 21 C 0.031 3.969 22 N -0.791 5.791 23 Si 1.070 2.930 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.272 1.272 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.394 0.606 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 15.114 -15.031 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.630 4.630 3 C -0.195 4.195 4 C -0.200 4.200 5 S 2.606 3.394 6 O -0.926 6.926 7 O -0.927 6.927 8 C -0.760 4.760 9 C 0.014 3.986 10 N -0.400 5.400 11 C 0.356 3.644 12 O -0.410 6.410 13 C -0.271 4.271 14 C -0.062 4.062 15 C -0.279 4.279 16 C -0.095 4.095 17 C -0.218 4.218 18 C 0.115 3.885 19 C -0.491 4.491 20 H 0.124 0.876 21 C -0.191 4.191 22 N -0.414 5.414 23 Si 0.893 3.107 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.197 1.197 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.229 0.771 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.009 15.000 -12.102 19.273 hybrid contribution -1.487 0.229 -2.884 3.253 sum -1.478 15.229 -14.986 21.417 Atomic orbital electron populations 1.21839 0.89449 1.03774 1.04978 1.29753 1.06602 1.08923 1.17693 1.21714 1.02112 0.91117 1.04598 1.21837 1.02602 1.00050 0.95537 1.08194 0.76246 0.77761 0.77174 1.93590 1.79291 1.74527 1.45224 1.93588 1.26770 1.85770 1.86535 1.30696 1.14282 1.22261 1.08765 1.20695 0.99592 0.83810 0.94536 1.45936 1.56307 1.10499 1.27303 1.18449 0.80070 0.84394 0.81478 1.90700 1.39174 1.81513 1.29641 1.19321 1.10819 0.92557 1.04415 1.20698 0.94982 0.95549 0.94990 1.20229 1.09857 0.94721 1.03122 1.20746 0.96832 0.97224 0.94650 1.21260 1.04000 0.96770 0.99798 1.17500 0.89313 0.89582 0.92091 1.21214 1.11153 1.21356 0.95386 0.87601 1.27299 1.00860 0.90655 1.00259 1.70397 1.02016 1.30730 1.38269 0.83560 0.74053 0.78088 0.74988 1.19906 1.19899 1.19668 0.90279 0.90166 0.91057 0.90771 0.89984 0.90770 0.91063 0.90163 0.90289 0.84221 0.84226 0.90486 0.90482 0.77130 0.89185 0.88895 0.88836 0.87474 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.22 37.16 0.31 -0.44 16 2 C -0.54 -3.57 0.87 -90.62 -0.08 -3.65 16 3 C -0.14 -0.86 8.48 37.16 0.32 -0.55 16 4 C -0.14 -0.74 8.22 37.16 0.31 -0.43 16 5 S 2.43 25.63 3.76 -107.50 -0.40 25.23 16 6 O -0.93 -12.90 17.91 -57.83 -1.04 -13.93 16 7 O -0.93 -12.81 17.91 -57.83 -1.04 -13.84 16 8 C -0.63 -5.96 5.02 37.16 0.19 -5.78 16 9 C 0.14 2.11 5.68 -4.05 -0.02 2.09 16 10 N -0.74 -12.83 5.51 -61.38 -0.34 -13.17 16 11 C 0.56 13.00 7.73 -12.52 -0.10 12.91 16 12 O -0.53 -14.22 13.56 5.27 0.07 -14.15 16 13 C -0.27 -6.40 5.92 -104.36 -0.62 -7.01 16 14 C -0.04 -0.89 9.53 -39.22 -0.37 -1.26 16 15 C -0.26 -5.31 10.03 -39.37 -0.39 -5.71 16 16 C -0.08 -1.65 10.01 -39.60 -0.40 -2.04 16 17 C -0.20 -4.91 7.87 -38.88 -0.31 -5.22 16 18 C 0.12 3.17 5.17 -106.54 -0.55 2.62 16 19 C -0.46 -12.78 7.65 -37.81 -0.29 -13.07 16 20 H 0.11 3.04 5.92 -52.49 -0.31 2.73 16 21 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 22 N -0.79 -21.17 12.57 55.56 0.70 -20.47 16 23 Si 1.07 22.65 29.98 -169.99 -5.10 17.56 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H 0.08 0.45 8.06 -51.93 -0.42 0.04 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.27 6.56 -51.93 -0.34 -0.07 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.27 6.56 -51.93 -0.34 -0.07 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.44 8.06 -51.93 -0.42 0.03 16 36 H 0.14 0.93 6.87 -51.92 -0.36 0.57 16 37 H 0.14 0.94 6.87 -51.92 -0.36 0.59 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.39 5.50 6.51 -40.82 -0.27 5.23 16 41 H 0.09 1.47 6.41 -52.49 -0.34 1.14 16 42 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.11 2.70 6.94 -52.49 -0.36 2.33 16 45 H 0.30 8.14 6.55 -40.82 -0.27 7.87 16 LS Contribution 376.39 15.07 5.67 5.67 Total: -1.00 -35.21 376.39 -9.95 -45.16 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.38 Total: 8.76 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -2.10 Total: -26.82 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.36 Total: -33.63 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -2.00 Total: -41.92 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.10 Total: 17.56 kcal Atomic # 16 Polarization: 25.63 SS G_CDS: -0.40 Total: 25.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.21 -9.95 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865826473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.941 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds