Wall clock time and date at job start Tue Mar 31 2020 22:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47255 * 2 1 4 4 C 1.53000 * 109.47021 * 239.99952 * 2 1 3 5 5 S 1.81406 * 109.46931 * 120.00365 * 2 1 3 6 6 O 1.42096 * 108.57643 * 305.50936 * 5 2 1 7 7 O 1.42101 * 108.57726 * 174.48870 * 5 2 1 8 8 C 1.81400 * 101.92243 * 59.99861 * 5 2 1 9 9 C 1.52995 * 109.47132 * 180.02562 * 8 5 2 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 5 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.08996 * 109.47134 * 300.00188 * 1 2 3 28 28 H 1.09001 * 109.46863 * 59.99649 * 1 2 3 29 29 H 1.09004 * 109.47557 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46878 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47472 * 299.99978 * 3 2 1 32 32 H 1.08998 * 109.47075 * 60.00375 * 3 2 1 33 33 H 1.09002 * 109.47598 * 300.00271 * 4 2 1 34 34 H 1.09000 * 109.47299 * 60.00038 * 4 2 1 35 35 H 1.08998 * 109.47122 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.46800 * 59.99948 * 8 5 2 37 37 H 1.09005 * 109.47077 * 300.00131 * 8 5 2 38 38 H 1.09004 * 109.47250 * 59.99742 * 9 8 5 39 39 H 1.09005 * 109.47069 * 299.99918 * 9 8 5 40 40 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 42 42 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 43 43 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1346 -0.8553 1.4811 6 8 1.5479 -0.2496 2.6248 7 8 3.5496 -0.9573 1.3991 8 6 1.4228 -2.5109 1.2747 9 6 1.8330 -3.3933 2.4553 10 7 1.2577 -4.7302 2.2889 11 6 1.4875 -5.6827 3.2143 12 8 2.1721 -5.4322 4.1877 13 6 0.9090 -7.0284 3.0466 14 6 0.0683 -7.3021 1.9709 15 6 -0.4766 -8.5635 1.8207 16 6 -0.1904 -9.5717 2.7311 17 6 0.6414 -9.3331 3.8010 18 6 1.2083 -8.0574 3.9774 19 6 2.0608 -7.8025 5.0698 20 1 2.8891 -7.1183 4.9602 21 6 1.8336 -8.4376 6.2997 22 7 0.6622 -8.9528 6.5623 23 14 3.2061 -8.5465 7.5622 24 1 2.7139 -9.2596 8.7683 25 1 4.3544 -9.2882 6.9822 26 1 3.6409 -7.1778 7.9400 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7217 -1.2490 36 1 1.7893 -2.9508 0.3472 37 1 0.3359 -2.4371 1.2371 38 1 1.4662 -2.9531 3.3826 39 1 2.9199 -3.4672 2.4932 40 1 0.7114 -4.9299 1.5127 41 1 -0.1622 -6.5263 1.2557 42 1 -1.1313 -8.7669 0.9863 43 1 -0.6243 -10.5518 2.5986 44 1 0.8589 -10.1235 4.5040 45 1 -0.0716 -8.8315 5.9397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865826473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:44 Heat of formation + Delta-G solvation = -127.205107 kcal Electronic energy + Delta-G solvation = -27223.808345 eV Core-core repulsion = 23331.842652 eV Total energy + Delta-G solvation = -3891.965693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88079 -38.89389 -38.18459 -37.56891 -37.16984 -36.48791 -35.73276 -32.73816 -31.50572 -30.86959 -28.44333 -28.30981 -27.17897 -25.20842 -23.77658 -22.78371 -22.42455 -21.43473 -19.99118 -19.52919 -18.29556 -17.99259 -17.30517 -17.07369 -16.71345 -16.52186 -16.39863 -15.86121 -15.74974 -15.48254 -15.24681 -15.13342 -14.83037 -14.44088 -14.36158 -14.00829 -13.77571 -13.44605 -13.40356 -13.27305 -13.25842 -13.16829 -12.97869 -12.89852 -12.71958 -12.52755 -12.51312 -12.29237 -12.15860 -12.05706 -11.98147 -11.93269 -11.48128 -11.07542 -10.97614 -10.41052 -10.15858 -9.63090 -9.50276 -9.12420 -6.48212 -1.15760 0.37678 0.90389 1.45183 1.60519 1.65525 1.75157 2.19743 2.21509 2.29364 2.65522 2.72271 2.90995 3.32618 3.45813 3.47667 3.54439 3.77146 3.93493 4.15203 4.23050 4.25870 4.42698 4.43989 4.57305 4.58559 4.61863 4.69963 4.76298 4.80360 4.80594 4.84285 4.87571 5.09673 5.12485 5.22255 5.28168 5.41255 5.42132 5.63772 5.69691 5.88023 5.95497 6.18863 6.33123 6.64621 6.83205 6.89209 7.52867 8.02906 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.002767 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.050794 B =10115.936288 C =11363.552610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.501 4.501 3 C -0.150 4.150 4 C -0.152 4.152 5 S 2.403 3.597 6 O -0.977 6.977 7 O -0.976 6.976 8 C -0.619 4.619 9 C 0.128 3.872 10 N -0.718 5.718 11 C 0.553 3.447 12 O -0.580 6.580 13 C -0.283 4.283 14 C -0.039 4.039 15 C -0.242 4.242 16 C -0.072 4.072 17 C -0.225 4.225 18 C 0.095 3.905 19 C -0.513 4.513 20 H 0.079 0.921 21 C -0.002 4.002 22 N -0.816 5.816 23 Si 1.113 2.887 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.274 1.274 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.177 0.823 37 H 0.176 0.824 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.414 0.586 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 15.667 -19.666 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.596 4.596 3 C -0.208 4.208 4 C -0.210 4.210 5 S 2.590 3.410 6 O -0.974 6.974 7 O -0.973 6.973 8 C -0.747 4.747 9 C 0.003 3.997 10 N -0.374 5.374 11 C 0.346 3.654 12 O -0.461 6.461 13 C -0.288 4.288 14 C -0.058 4.058 15 C -0.260 4.260 16 C -0.090 4.090 17 C -0.245 4.245 18 C 0.091 3.909 19 C -0.541 4.541 20 H 0.097 0.903 21 C -0.218 4.218 22 N -0.440 5.440 23 Si 0.931 3.069 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.200 1.200 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.195 0.805 37 H 0.194 0.806 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.253 0.747 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.143 0.857 44 H 0.107 0.893 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.322 15.549 -16.756 22.977 hybrid contribution -0.916 0.187 -1.812 2.039 sum -3.238 15.736 -18.568 24.554 Atomic orbital electron populations 1.22035 0.87638 1.05552 1.05775 1.29430 1.07716 1.08084 1.14355 1.21898 1.02024 0.91156 1.05714 1.22034 1.02373 1.01449 0.95119 1.08583 0.75493 0.78370 0.78529 1.93529 1.79514 1.75421 1.48952 1.93528 1.29707 1.86460 1.87630 1.30595 1.16654 1.19968 1.07528 1.20773 0.98679 0.83472 0.96775 1.45584 1.55306 1.10158 1.26383 1.18596 0.79648 0.85322 0.81795 1.90684 1.41190 1.82343 1.31929 1.19724 1.11381 0.92621 1.05086 1.21190 0.92995 0.97267 0.94346 1.20840 1.08384 0.93747 1.03078 1.21187 0.95168 0.99330 0.93323 1.21206 1.06146 0.95884 1.01246 1.17911 0.89490 0.90980 0.92565 1.21119 1.12475 1.23363 0.97144 0.90295 1.28429 1.02061 0.89786 1.01501 1.70502 1.02036 1.33435 1.38036 0.83049 0.72262 0.78115 0.73474 1.18676 1.18264 1.19953 0.91177 0.87707 0.88919 0.91365 0.87072 0.91417 0.88910 0.87712 0.91116 0.80490 0.80597 0.92420 0.92195 0.74693 0.84009 0.84203 0.85702 0.89337 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.22 71.98 0.59 -0.34 16 2 C -0.50 -5.11 0.87 -10.80 -0.01 -5.12 16 3 C -0.15 -1.57 8.48 71.98 0.61 -0.96 16 4 C -0.15 -0.90 8.22 71.98 0.59 -0.31 16 5 S 2.40 49.61 3.76 -56.49 -0.21 49.39 16 6 O -0.98 -28.15 17.91 -127.37 -2.28 -30.43 16 7 O -0.98 -27.86 17.91 -127.37 -2.28 -30.15 16 8 C -0.62 -9.97 5.02 71.98 0.36 -9.61 16 9 C 0.13 3.86 5.68 86.38 0.49 4.35 16 10 N -0.72 -23.58 5.51 -466.37 -2.57 -26.15 16 11 C 0.55 25.96 7.73 86.67 0.67 26.63 16 12 O -0.58 -32.87 13.56 -4.06 -0.06 -32.92 16 13 C -0.28 -13.52 5.92 -19.70 -0.12 -13.64 16 14 C -0.04 -1.46 9.53 22.51 0.21 -1.25 16 15 C -0.24 -8.67 10.03 22.41 0.22 -8.44 16 16 C -0.07 -2.93 10.01 22.26 0.22 -2.71 16 17 C -0.23 -11.34 7.87 22.72 0.18 -11.16 16 18 C 0.09 5.19 5.17 -21.11 -0.11 5.08 16 19 C -0.51 -30.19 7.65 23.41 0.18 -30.01 16 20 H 0.08 4.94 5.92 -2.91 -0.02 4.93 16 21 C 0.00 -0.13 5.04 85.37 0.43 0.30 16 22 N -0.82 -46.17 12.57 21.88 0.28 -45.89 16 23 Si 1.11 48.39 29.98 68.60 2.06 50.45 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H 0.07 0.61 8.06 -2.39 -0.02 0.59 16 28 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.18 6.56 -2.39 -0.02 0.17 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.17 6.56 -2.39 -0.02 0.15 16 34 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.07 0.59 8.06 -2.39 -0.02 0.57 16 36 H 0.18 1.51 6.87 -2.39 -0.02 1.49 16 37 H 0.18 1.54 6.87 -2.39 -0.02 1.52 16 38 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.41 9.76 6.51 -92.71 -0.60 9.16 16 41 H 0.14 3.71 6.41 -2.91 -0.02 3.69 16 42 H 0.14 3.83 8.06 -2.92 -0.02 3.81 16 43 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 44 H 0.09 4.68 6.94 -2.91 -0.02 4.66 16 45 H 0.28 16.41 6.55 -92.71 -0.61 15.81 16 Total: -1.00 -86.53 376.39 0.03 -86.49 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.57 Total: 26.39 kcal Atomic # 6 Polarization: -51.71 SS G_CDS: 4.53 Total: -47.18 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -2.29 Total: -72.04 kcal Atomic # 8 Polarization: -88.88 SS G_CDS: -4.62 Total: -93.50 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.06 Total: 50.45 kcal Atomic # 16 Polarization: 49.61 SS G_CDS: -0.21 Total: 49.39 kcal Total: -86.53 0.03 -86.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865826473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.712 kcal (2) G-P(sol) polarization free energy of solvation -86.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds