Wall clock time and date at job start Tue Mar 31 2020 23:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47355 * 2 1 4 4 O 1.42898 * 109.46921 * 120.00390 * 2 1 3 5 5 C 1.42899 * 114.00239 * 89.99792 * 4 2 1 6 6 C 1.53003 * 109.46782 * 179.97438 * 5 4 2 7 7 H 1.08990 * 109.55744 * 305.12573 * 6 5 4 8 8 C 1.53300 * 109.51011 * 184.99653 * 6 5 4 9 9 N 1.47152 * 108.38781 * 187.77307 * 8 6 5 10 10 C 1.34772 * 120.98631 * 230.56479 * 9 8 6 11 11 O 1.21760 * 119.99613 * 355.62172 * 10 9 8 12 12 C 1.46233 * 120.00098 * 175.63094 * 10 9 8 13 13 S 1.75663 * 125.23035 * 48.53300 * 12 10 9 14 14 C 1.75474 * 92.09460 * 179.97438 * 13 12 10 15 15 C 1.32764 * 111.36173 * 359.97438 * 14 13 12 16 16 C 1.39550 * 125.23012 * 228.22805 * 12 10 9 17 17 C 1.40540 * 123.70910 * 0.02562 * 16 12 10 18 18 H 1.07993 * 120.00705 * 18.91550 * 17 16 12 19 19 C 1.40309 * 119.99633 * 198.92381 * 17 16 12 20 20 N 1.30639 * 120.00128 * 14.30101 * 19 17 16 21 21 Si 1.86804 * 119.99910 * 194.31095 * 19 17 16 22 22 H 1.48497 * 109.47284 * 89.99581 * 21 19 17 23 23 H 1.48504 * 109.46878 * 209.99685 * 21 19 17 24 24 H 1.48501 * 109.46793 * 329.99328 * 21 19 17 25 25 C 1.47157 * 118.03013 * 50.53662 * 9 8 6 26 26 C 1.53294 * 108.41775 * 309.44768 * 25 9 8 27 27 O 1.42960 * 109.51447 * 65.25786 * 6 5 4 28 28 H 1.09005 * 109.46940 * 60.00021 * 1 2 3 29 29 H 1.08999 * 109.47518 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47010 * 300.00230 * 1 2 3 31 31 H 1.09001 * 109.46855 * 239.99544 * 2 1 3 32 32 H 1.08999 * 109.46917 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46998 * 299.99929 * 3 2 1 34 34 H 1.08999 * 109.46605 * 59.99941 * 3 2 1 35 35 H 1.08996 * 109.46943 * 60.00306 * 5 4 2 36 36 H 1.08996 * 109.47309 * 299.99634 * 5 4 2 37 37 H 1.09002 * 109.67990 * 68.05534 * 8 6 5 38 38 H 1.08994 * 109.68503 * 307.50180 * 8 6 5 39 39 H 1.08002 * 124.32022 * 180.02562 * 14 13 12 40 40 H 1.08001 * 122.78212 * 180.02562 * 15 14 13 41 41 H 0.97004 * 120.00063 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.67573 * 69.19283 * 25 9 8 43 43 H 1.08998 * 109.68126 * 189.70335 * 25 9 8 44 44 H 1.09004 * 109.50686 * 172.24558 * 26 25 9 45 45 H 1.08997 * 109.51225 * 292.39561 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9885 6 6 2.7090 -2.6925 2.2942 7 1 3.6067 -2.1668 2.6191 8 6 3.0356 -4.1734 2.0701 9 7 3.3414 -4.7837 3.3737 10 6 4.4615 -5.5114 3.5535 11 8 5.1975 -5.7388 2.6106 12 6 4.7926 -6.0279 4.8809 13 16 3.6846 -6.8863 5.9397 14 6 4.9117 -7.0714 7.1803 15 6 6.0621 -6.5230 6.8082 16 6 6.0392 -5.9199 5.4988 17 6 7.1492 -5.2896 4.9107 18 1 7.0078 -4.6014 4.0906 19 6 8.4413 -5.5548 5.3891 20 7 8.6497 -6.5767 6.1758 21 14 9.8636 -4.4463 4.9012 22 1 9.9932 -3.3441 5.8878 23 1 11.1205 -5.2368 4.8741 24 1 9.6078 -3.8771 3.5537 25 6 2.3883 -4.5755 4.4754 26 6 2.0930 -3.0751 4.5832 27 8 1.6994 -2.5803 3.3001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 2.9319 -2.2467 0.1986 36 1 1.2537 -2.5434 0.7124 37 1 3.8993 -4.2632 1.4112 38 1 2.1778 -4.6749 1.6222 39 1 4.7518 -7.5687 8.1255 40 1 6.9430 -6.5314 7.4330 41 1 9.5430 -6.7598 6.5068 42 1 1.4653 -5.1175 4.2696 43 1 2.8230 -4.9321 5.4092 44 1 1.2876 -2.9132 5.2997 45 1 2.9886 -2.5508 4.9165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867480895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:45 Heat of formation + Delta-G solvation = -122.423698 kcal Electronic energy + Delta-G solvation = -27611.225473 eV Core-core repulsion = 23719.467117 eV Total energy + Delta-G solvation = -3891.758356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20923 -39.64006 -38.85893 -37.83108 -35.60211 -34.91264 -34.30329 -32.67090 -30.92338 -29.42268 -28.50271 -28.05654 -26.44133 -24.39726 -23.86889 -22.49492 -22.15916 -21.18091 -20.50308 -18.88342 -18.06353 -17.90000 -17.70080 -17.24114 -16.89727 -16.55984 -16.16669 -16.01838 -15.84494 -15.54040 -15.41874 -15.06174 -14.35893 -14.24122 -14.19831 -13.85495 -13.79189 -13.57893 -13.50307 -13.31143 -13.09609 -13.00765 -12.86026 -12.66309 -12.50456 -12.32450 -12.18019 -12.10215 -12.07272 -11.79805 -11.58996 -11.38314 -11.18126 -11.03430 -10.64683 -10.53918 -9.59155 -9.35140 -8.88358 -8.85364 -6.46171 0.37477 1.26898 1.30564 1.33173 1.44876 1.58262 1.94919 2.01031 2.13589 2.43726 2.57096 2.73756 3.24673 3.75366 3.83064 3.86421 4.00655 4.05711 4.14734 4.19594 4.22484 4.31362 4.36925 4.41437 4.48004 4.51656 4.64127 4.73322 4.77366 4.86958 4.88198 4.93369 4.94163 4.96141 4.96539 5.26574 5.29852 5.35414 5.35519 5.52519 5.61499 5.82936 6.05464 6.24861 6.31068 6.48324 6.61257 6.76906 7.45854 8.07612 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.003300 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.657232 B = 8483.164989 C =10023.445001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 C -0.148 4.148 4 O -0.398 6.398 5 C 0.080 3.920 6 C 0.088 3.912 7 H 0.048 0.952 8 C 0.090 3.910 9 N -0.623 5.623 10 C 0.614 3.386 11 O -0.598 6.598 12 C -0.474 4.474 13 S 0.032 5.968 14 C -0.201 4.201 15 C -0.128 4.128 16 C 0.117 3.883 17 C -0.434 4.434 18 H 0.060 0.940 19 C 0.041 3.959 20 N -0.796 5.796 21 Si 0.985 3.015 22 H -0.248 1.248 23 H -0.255 1.255 24 H -0.272 1.272 25 C 0.065 3.935 26 C 0.055 3.945 27 O -0.375 6.375 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.177 0.823 40 H 0.142 0.858 41 H 0.301 0.699 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 10.074 -4.738 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 C -0.205 4.205 4 O -0.318 6.318 5 C 0.003 3.997 6 C 0.029 3.971 7 H 0.066 0.934 8 C -0.033 4.033 9 N -0.357 5.357 10 C 0.408 3.592 11 O -0.481 6.481 12 C -0.592 4.592 13 S 0.289 5.711 14 C -0.334 4.334 15 C -0.160 4.160 16 C 0.106 3.894 17 C -0.465 4.465 18 H 0.079 0.921 19 C -0.179 4.179 20 N -0.420 5.420 21 Si 0.805 3.195 22 H -0.172 1.172 23 H -0.179 1.179 24 H -0.197 1.197 25 C -0.059 4.059 26 C -0.022 4.022 27 O -0.294 6.294 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.194 0.806 40 H 0.160 0.840 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.125 0.875 44 H 0.155 0.845 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.920 9.527 -5.053 16.829 hybrid contribution 2.493 0.199 -0.142 2.505 sum -10.427 9.726 -5.195 15.176 Atomic orbital electron populations 1.22257 0.95116 1.02401 1.02958 1.22356 0.94516 0.94220 0.87664 1.21877 1.01428 0.94033 1.03175 1.87958 1.86978 1.19678 1.37209 1.22400 1.01195 0.82019 0.94109 1.22341 0.91402 0.93557 0.89764 0.93422 1.22073 1.02226 0.92920 0.86054 1.48075 1.22784 1.52495 1.12318 1.17229 0.78747 0.76190 0.87028 1.90630 1.51891 1.61818 1.43747 1.22756 1.00820 1.33537 1.02081 1.82475 1.15142 1.62118 1.11332 1.25541 0.97130 1.07289 1.03473 1.21614 0.98026 1.00197 0.96202 1.18201 0.91076 0.89057 0.91059 1.19466 0.91460 1.21607 1.13961 0.92143 1.26892 1.02664 0.95624 0.92681 1.69647 1.26045 1.22330 1.23974 0.85156 0.75981 0.78758 0.79642 1.17237 1.17901 1.19704 1.22842 0.92967 0.98013 0.92031 1.23076 1.01798 0.91800 0.85572 1.87950 1.39124 1.83044 1.19284 0.89765 0.92736 0.92680 0.91040 0.92677 0.89014 0.92549 0.90195 0.90977 0.89888 0.89454 0.80598 0.84020 0.88801 0.89846 0.87530 0.84483 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.53 71.98 0.69 -1.98 16 2 C 0.07 1.27 3.34 30.60 0.10 1.38 16 3 C -0.15 -2.35 9.56 71.98 0.69 -1.66 16 4 O -0.40 -10.27 9.96 -144.70 -1.44 -11.71 16 5 C 0.08 1.92 5.41 71.98 0.39 2.31 16 6 C 0.09 2.69 3.06 30.70 0.09 2.78 16 7 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 8 C 0.09 3.05 5.91 86.36 0.51 3.56 16 9 N -0.62 -25.05 3.02 -822.52 -2.48 -27.53 16 10 C 0.61 31.14 7.06 86.32 0.61 31.75 16 11 O -0.60 -34.63 15.88 -4.54 -0.07 -34.70 16 12 C -0.47 -24.11 5.43 24.67 0.13 -23.98 16 13 S 0.03 1.32 20.28 -56.49 -1.15 0.18 16 14 C -0.20 -8.20 11.07 66.64 0.74 -7.46 16 15 C -0.13 -6.18 9.07 22.60 0.21 -5.97 16 16 C 0.12 6.34 5.71 -20.89 -0.12 6.22 16 17 C -0.43 -24.24 8.61 23.34 0.20 -24.04 16 18 H 0.06 3.59 7.34 -2.91 -0.02 3.56 16 19 C 0.04 2.05 5.36 85.37 0.46 2.50 16 20 N -0.80 -38.89 10.77 21.89 0.24 -38.66 16 21 Si 0.98 38.13 29.59 68.60 2.03 40.16 16 22 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 23 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 C 0.06 2.14 6.05 86.35 0.52 2.66 16 26 C 0.05 1.57 6.99 72.08 0.50 2.08 16 27 O -0.38 -11.47 10.35 -144.70 -1.50 -12.96 16 28 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.05 0.88 7.87 -2.39 -0.02 0.86 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.11 7.79 -2.39 -0.02 1.09 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.66 8.08 -2.39 -0.02 1.65 16 36 H 0.07 1.53 7.87 -2.39 -0.02 1.51 16 37 H 0.08 3.06 7.11 -2.39 -0.02 3.04 16 38 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.18 5.72 8.06 -2.91 -0.02 5.70 16 40 H 0.14 6.86 6.27 -2.91 -0.02 6.84 16 41 H 0.30 12.91 8.29 -92.71 -0.77 12.14 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.11 3.80 4.40 -12.20 -0.05 3.75 16 44 H 0.14 2.96 8.14 -2.38 -0.02 2.94 16 45 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -68.71 377.83 2.30 -66.41 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.95 Total: 28.67 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 5.72 Total: -9.87 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -2.25 Total: -66.19 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: -3.01 Total: -59.37 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.15 Total: 0.18 kcal Total: -68.71 2.30 -66.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867480895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.010 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds